Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

11905330 .. 11909640

Gene Structure 4311 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g18610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGCCGTTGTCTCACCTGAGATTGTCCGCTCCATATTCAACCATTGATCGTGTTCCGCTGTTCGGATATGTGGTGGAAACCACCCACTTTCCACAGAACATGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGCCTCCGTTGATTGCCTCTACCAATTCTTCCCCTCAACTTCACTACATTGGAGCCATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCCAACCTCAGCCATTCAATAGTTAGCAGAAAGTCACGAGAGCAGCAAAACATAAGAAAGGAGGTTCGATTAATTGGTCAGAGTGACTCTACTGTAAGTATTAGCAATGAAGAAATAAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCAAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACACAGTGCAGAGACTTGCGAGCGCATCAGGCAACATACAATAGAAGCCTTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGCCCCCGCTCACATAGTGAGGAGTCCAAGGCAAAAATGAGTTCTTCACTCAGACGTCTTTGGGGACAGCGTTTAAAGTGGAAAAGGTCAAGGGAGAAGCTCTTTCTGTCATGGGTAGAAAGCATAACAGAGGCAGCTAAGACAGGTGGAAATGAGCAACAAGAGCTAAACTGGGATAGTTATGAGATTATACGGGAAGAATTATATCTGCAACAGCTGCAGCAGGCTGCCGAAAAGAAAAAGGCAAAGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCGGCACGAGCTAAAGAAAAAAAGAAGGCACGGCTTGCTGTTGAGAGGAAAGCAGATGGAGAGTTGACATCTCTAAAAGGGCTGAAAGTTAAGCGGAGATCAACGAAGCTTGACAGAAAGACTTTTACAAATGCTCAAGTTGCTAGCCGAAGGAACATAGTTGCATCGCAATTACGTATCTCGGCTTTGGAGAAATTGGATGTAGAGCTCATAAAGAAAGAAAAAATGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAGTGGAACAAGCTATGGCTGCCCCATGTACCGTGGTACTACACAACAAACCAGGGATGCATACACTTCTGCAGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

382

Amino Acids

43.88

Weight (kDa)

10.33

Isoelectric Point (pI)

59.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUMOD3	PF07460	121 - 150	5.9e-07	NUMOD3 motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	565
AccBSI	CCGCTC	2 cut(s)	29, 516
AciI	CCGC	5 cut(s)	27, 56, 514, 788, 880
AcyI	GRCGYC	1 cut(s)	562
AdeI	CACNNNGTG	1 cut(s)	524
AfaI	GTAC	2 cut(s)	1093, 1101
AfiI	CCNNNNNNNGG	1 cut(s)	62
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	39, 112, 252
AjnI	CCWGG	1 cut(s)	1114
AluBI	AGCT	9 cut(s)	607, 644, 673, 724, 797, 895, 994, 1049, 1076
AluI	AGCT	9 cut(s)	607, 644, 673, 724, 797, 895, 994, 1049, 1076
Alw21I	GWGCWC	1 cut(s)	996
Alw26I	GTCTC	2 cut(s)	15, 428
AoxI	GGCC	1 cut(s)	140
ApeKI	GCWGC	8 cut(s)	277, 641, 724, 727, 734, 785, 1049, 1082
AseI	ATTAAT	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	447, 510
AsuHPI	GGTGA	1 cut(s)	5
AsuNHI	GCTAGC	1 cut(s)	929
BanII	GRGCYC	1 cut(s)	996
BauI	CACGAG	2 cut(s)	270, 792
Bbv12I	GWGCWC	1 cut(s)	996
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	8 cut(s)	289, 653, 711, 721, 739, 797, 1036, 1069
BccI	CCATC	1 cut(s)	836
BceAI	ACGGC	1 cut(s)	833
BciT130I	CCWGG	1 cut(s)	1116
BcoDI	GTCTC	2 cut(s)	15, 428
BfaI	CTAG	2 cut(s)	383, 930
BfmI	CTRYAG	2 cut(s)	725, 1133
BfoI	RGCGCY	1 cut(s)	511
BisI	GCNGC	9 cut(s)	278, 642, 725, 728, 735, 786, 789, 1050, 1083
BlsI	GCNGC	9 cut(s)	279, 643, 726, 729, 736, 787, 790, 1051, 1084
Bme1390I	CCNGG	1 cut(s)	1116
BmiI	GGNNCC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	1116
BmrI	ACTGGG	1 cut(s)	688
BmsI	GCATC	3 cut(s)	456, 959, 1110
BmtI	GCTAGC	1 cut(s)	933
BmuI	ACTGGG	1 cut(s)	688
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	906
BsaAI	YACGTR	2 cut(s)	125, 962
BsaHI	GRCGYC	1 cut(s)	562
BsaJI	CCNNGG	6 cut(s)	404, 483, 534, 777, 1095, 1115
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	683
Bse3DI	GCAATG	1 cut(s)	346
BseBI	CCWGG	1 cut(s)	1116
BseDI	CCNNGG	6 cut(s)	404, 483, 534, 777, 1095, 1115
BseGI	GGATG	3 cut(s)	223, 991, 1125
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	4 cut(s)	8, 122, 256, 571
BseNI	ACTGG	1 cut(s)	683
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	8 cut(s)	289, 653, 711, 721, 739, 797, 1036, 1069
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	142
BsiHKAI	GWGCWC	1 cut(s)	996
BslFI	GGGAC	2 cut(s)	487, 585
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	2 cut(s)	15, 428
BsmFI	GGGAC	2 cut(s)	487, 585
BsnI	GGCC	1 cut(s)	142
Bsp1286I	GDGCHC	1 cut(s)	996
Bsp143I	GATC	3 cut(s)	46, 201, 884
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	5 cut(s)	27, 56, 514, 788, 880
BspANI	GGCC	1 cut(s)	142
BspCNI	CTCAG	4 cut(s)	9, 123, 255, 570
BspLI	GGNNCC	1 cut(s)	193
BspMAI	CTGCAG	2 cut(s)	729, 1137
BspOI	GCTAGC	1 cut(s)	933
BsrBI	CCGCTC	2 cut(s)	29, 516
BsrDI	GCAATG	1 cut(s)	346
BsrI	ACTGG	1 cut(s)	683
BssECI	CCNNGG	6 cut(s)	404, 483, 534, 777, 1095, 1115
BssMI	GATC	3 cut(s)	46, 201, 884
BssNI	GRCGYC	1 cut(s)	562
BssSI	CACGAG	2 cut(s)	270, 792
BssT1I	CCWWGG	4 cut(s)	404, 483, 534, 777
Bst2BI	CACGAG	2 cut(s)	270, 792
Bst2UI	CCWGG	1 cut(s)	1116
Bst4CI	ACNGT	3 cut(s)	328, 428, 1096
BstACI	GRCGYC	1 cut(s)	562
BstAPI	GCANNNNNTGC	2 cut(s)	724, 821
BstBAI	YACGTR	2 cut(s)	125, 962
BstC8I	GCNNGC	5 cut(s)	443, 732, 822, 931, 1017
BstDEI	CTNAG	6 cut(s)	17, 131, 242, 557, 645, 1140
BstDSI	CCRYGG	2 cut(s)	404, 1095
BstF5I	GGATG	3 cut(s)	223, 991, 1125
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	2 cut(s)	447, 510
BstKTI	GATC	3 cut(s)	49, 204, 887
BstMAI	GTCTC	2 cut(s)	15, 428
BstMBI	GATC	3 cut(s)	46, 201, 884
BstMWI	GCNNNNNNNGC	8 cut(s)	451, 670, 724, 782, 794, 821, 926, 1082
BstNI	CCWGG	1 cut(s)	1116
BstSCI	CCNGG	1 cut(s)	1114
BstSFI	CTRYAG	2 cut(s)	725, 1133
BstSNI	TACGTA	1 cut(s)	962
BstV1I	GCAGC	8 cut(s)	289, 653, 711, 721, 739, 797, 1036, 1069
BsuRI	GGCC	1 cut(s)	142
BtgI	CCRYGG	2 cut(s)	404, 1095
BtgZI	GCGATG	1 cut(s)	936
BtsCI	GGATG	3 cut(s)	223, 991, 1125
BtsIMutI	CAGTG	2 cut(s)	211, 433
Cac8I	GCNNGC	5 cut(s)	443, 732, 822, 931, 1017
CfoI	GCGC	2 cut(s)	447, 510
Csp6I	GTAC	2 cut(s)	1092, 1100
CviAII	CATG	6 cut(s)	100, 196, 214, 405, 618, 1089
CviQI	GTAC	2 cut(s)	1092, 1100
DdeI	CTNAG	6 cut(s)	17, 131, 242, 557, 645, 1140
DpnI	GATC	3 cut(s)	48, 203, 886
DpnII	GATC	3 cut(s)	46, 201, 884
DraI	TTTAAA	1 cut(s)	582
DraIII	CACNNNGTG	1 cut(s)	524
Ecl136II	GAGCTC	1 cut(s)	994
Eco105I	TACGTA	1 cut(s)	962
Eco130I	CCWWGG	4 cut(s)	404, 483, 534, 777
Eco24I	GRGCYC	1 cut(s)	996
Eco53kI	GAGCTC	1 cut(s)	994
EcoICRI	GAGCTC	1 cut(s)	994
EcoRII	CCWGG	1 cut(s)	1114
EcoT14I	CCWWGG	4 cut(s)	404, 483, 534, 777
EcoT22I	ATGCAT	1 cut(s)	1125
EcoT38I	GRGCYC	1 cut(s)	996
ErhI	CCWWGG	4 cut(s)	404, 483, 534, 777
FaeI	CATG	6 cut(s)	103, 199, 217, 408, 621, 1092
FaqI	GGGAC	2 cut(s)	487, 585
FatI	CATG	6 cut(s)	99, 195, 213, 404, 617, 1088
FauI	CCCGC	1 cut(s)	521
Fnu4HI	GCNGC	9 cut(s)	278, 642, 725, 728, 735, 786, 789, 1050, 1083
FokI	GGATG	3 cut(s)	230, 998, 1132
FriOI	GRGCYC	1 cut(s)	996
Fsp4HI	GCNGC	9 cut(s)	278, 642, 725, 728, 735, 786, 789, 1050, 1083
FspBI	CTAG	2 cut(s)	383, 930
GlaI	GCGC	2 cut(s)	446, 509
GluI	GCNGC	9 cut(s)	278, 642, 725, 728, 735, 786, 789, 1050, 1083
GsaI	CCCAGC	1 cut(s)	508
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	1 cut(s)	142
HhaI	GCGC	2 cut(s)	447, 510
Hin1I	GRCGYC	1 cut(s)	562
Hin1II	CATG	6 cut(s)	103, 199, 217, 408, 621, 1092
Hin6I	GCGC	2 cut(s)	445, 508
HinP1I	GCGC	2 cut(s)	445, 508
HincII	GTYRAC	1 cut(s)	852
HindII	GTYRAC	1 cut(s)	852
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	3 cut(s)	136, 320, 530
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	852
Hpy188I	TCNGA	4 cut(s)	65, 132, 315, 560
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	852
HpyAV	CCTTC	2 cut(s)	805, 930
HpyCH4III	ACNGT	3 cut(s)	328, 428, 1096
HpyCH4IV	ACGT	3 cut(s)	124, 562, 961
HpyCH4V	TGCA	8 cut(s)	199, 431, 718, 727, 950, 1034, 1123, 1135
HpyF10VI	GCNNNNNNNGC	8 cut(s)	451, 670, 724, 782, 794, 821, 926, 1082
HpyF3I	CTNAG	6 cut(s)	17, 131, 242, 557, 645, 1140
HpySE526I	ACGT	3 cut(s)	124, 562, 961
Hsp92I	GRCGYC	1 cut(s)	562
Hsp92II	CATG	6 cut(s)	103, 199, 217, 408, 621, 1092
HspAI	GCGC	2 cut(s)	445, 508
Kzo9I	GATC	3 cut(s)	46, 201, 884
LmnI	GCTCC	3 cut(s)	34, 103, 191
Lsp1109I	GCAGC	8 cut(s)	289, 653, 711, 721, 739, 797, 1036, 1069
LweI	GCATC	3 cut(s)	456, 959, 1110
MaeI	CTAG	2 cut(s)	383, 930
MaeII	ACGT	3 cut(s)	124, 562, 961
MaeIII	GTNAC	2 cut(s)	267, 317
MalI	GATC	3 cut(s)	48, 203, 886
MbiI	CCGCTC	2 cut(s)	29, 516
MboI	GATC	3 cut(s)	46, 201, 884
MboII	GAAGA	5 cut(s)	159, 356, 508, 543, 716
MhlI	GDGCHC	1 cut(s)	996
MluCI	AATT	6 cut(s)	112, 163, 306, 707, 956, 980
MlyI	GAGTC	2 cut(s)	314, 539
MnlI	CCTC	9 cut(s)	126, 153, 166, 183, 251, 289, 520, 631, 825
Mph1103I	ATGCAT	1 cut(s)	1125
MseI	TTAA	4 cut(s)	305, 473, 581, 876
MslI	CAYNNNNRTG	1 cut(s)	123
MspA1I	CMGCKG	3 cut(s)	58, 724, 788
MspR9I	CCNGG	1 cut(s)	1116
MvaI	CCWGG	1 cut(s)	1116
MwoI	GCNNNNNNNGC	8 cut(s)	451, 670, 724, 782, 794, 821, 926, 1082
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	3 cut(s)	46, 201, 884
NheI	GCTAGC	1 cut(s)	929
NlaIII	CATG	6 cut(s)	103, 199, 217, 408, 621, 1092
NlaIV	GGNNCC	1 cut(s)	193
NmeAIII	GCCGAG	1 cut(s)	947
NmuCI	GTSAC	2 cut(s)	267, 317
NsiI	ATGCAT	1 cut(s)	1125
PfeI	GAWTC	1 cut(s)	136
PkrI	GCNGC	9 cut(s)	279, 643, 726, 729, 736, 787, 790, 1051, 1084
PleI	GAGTC	2 cut(s)	314, 538
PpsI	GAGTC	2 cut(s)	314, 538
Ppu21I	YACGTR	2 cut(s)	125, 962
PshBI	ATTAAT	1 cut(s)	305
Psp124BI	GAGCTC	1 cut(s)	996
Psp6I	CCWGG	1 cut(s)	1114
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	1114
PspN4I	GGNNCC	1 cut(s)	193
PstI	CTGCAG	2 cut(s)	729, 1137
PvuII	CAGCTG	1 cut(s)	724
RsaI	GTAC	2 cut(s)	1093, 1101
RsaNI	GTAC	2 cut(s)	1092, 1100
RseI	CAYNNNNRTG	1 cut(s)	123
SacI	GAGCTC	1 cut(s)	996
SaqAI	TTAA	4 cut(s)	305, 473, 581, 876
SatI	GCNGC	9 cut(s)	278, 642, 725, 728, 735, 786, 789, 1050, 1083
Sau3AI	GATC	3 cut(s)	46, 201, 884
SchI	GAGTC	2 cut(s)	314, 539
ScrFI	CCNGG	1 cut(s)	1116
SduI	GDGCHC	1 cut(s)	996
SfaNI	GCATC	3 cut(s)	456, 959, 1110
SfcI	CTRYAG	2 cut(s)	725, 1133
SmiMI	CAYNNNNRTG	1 cut(s)	123
SmlI	CTYRAG	1 cut(s)	921
SmoI	CTYRAG	1 cut(s)	921
SnaBI	TACGTA	1 cut(s)	962
Sse9I	AATT	6 cut(s)	112, 163, 306, 707, 956, 980
SsiI	CCGC	5 cut(s)	27, 56, 514, 788, 880
SspMI	CTAG	2 cut(s)	383, 930
SstI	GAGCTC	1 cut(s)	996
StyD4I	CCNGG	1 cut(s)	1114
StyI	CCWWGG	4 cut(s)	404, 483, 534, 777
TaaI	ACNGT	3 cut(s)	328, 428, 1096
TaiI	ACGT	3 cut(s)	127, 565, 964
TaqI	TCGA	1 cut(s)	301
TasI	AATT	6 cut(s)	112, 163, 306, 707, 956, 980
TauI	GCSGC	1 cut(s)	791
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	4 cut(s)	305, 473, 581, 876
Tru9I	TTAA	4 cut(s)	305, 473, 581, 876
TscAI	CASTG	2 cut(s)	211, 433
TseFI	GTSAC	2 cut(s)	267, 317
TseI	GCWGC	8 cut(s)	277, 641, 724, 727, 734, 785, 1049, 1082
Tsp45I	GTSAC	2 cut(s)	267, 317
TspDTI	ATGAA	2 cut(s)	357, 1017
TspGWI	ACGGA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	211, 433
VspI	ATTAAT	1 cut(s)	305
XspI	CTAG	2 cut(s)	383, 930
ZraI	GACGTC	1 cut(s)	563
Zsp2I	ATGCAT	1 cut(s)	1125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.