Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Forward (+)

37413079 .. 37417004

Gene Structure 3926 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1260000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCCGGTCTTCCACCTATTGGCTGCTCCACCATACTTGACTCTCAAGCATGTTCCACTGTTTGGTTATGTTGGGGAAGCCATTCACTTTGCACAGAACCCAGAAAATTGGAACTATTATTTGCCTGTTTTGAGGAATCGTTCTCCCTCGGTTGTTCTTGTAAGTTCCTTCCCTAGACTTCATTGTCTGGGAGCCGCGCACAGCAGTGCTGACATGGCTGAAAATTGTGATATTAATATTATGGACATCTGTCATTCTTTACTCGACATAAATACACATGAGAAACAAAGTTTAAGCAAGGAGGTTCCATCAGATAATGACGGCGACTCTCTTAGCAAGGAAGAAAAGGAGAGACAGAGACGAAAAAAAATAGGACAGGCCAACAAAGGGAGGATACCATGGAATAAGGGCAGGAAACATAGTTCAGAGACTTGTGAGCGAATCAAGCAAAGAACAATAGAAGCATTAAAGGACCCCAAGGTTAGAAAGAAGATGTCTGAGCATCCCCGTCCTCATAGTGCCGAGTCCAAGGCAAAGATGCGTTCTTCACTTAGACGTGTTTGGGGACAGCGTTTGAAGTGGAAACAGTTAAGGGAGAAGATTTTTCTTTCATGGGTAGAAAGCATAGCAGAGGAAGCAAAGAAAGGTGGGAGTGGACAGAAAGAGCTCCACTGGGATAGCTATGAGAAAATAAAACTAGAATTACATCTCCAACAGCTTCAGCATGATGCAGAAAAGAAAAAAGCAAAGGCAAAGGAGATGGCAAACAAAAGAGCAAAAAAAGCAGAACAAGCTAAAGCAAAAACGGTGGCAAGGCTTGATCACGAGAGGAAAGAAGATGGAGTAATTAATGAAGATGATGAAGAGTTGACAGTTCCTCAAGGGCTGAAACGTAACAAGAGATTAACGAAGCTTGACAGAAAGACTTTAATAGATGGTCAAGTTGCTGCTCAACGGGATATAACCATGTCACATATCTCATCTTTGGAGAAACTGGACCTAGAGCTTGTAAAGAGAGAGAAAATTCGAAAAGGTGTTTCGTTTGCAGACCAGATCAGAGCTGCCAAAAACAAAAAAATGGAACTAGCTATGGTAGCCACATCCTCTATTCGTGCAGTGGACGAGAAACCAGGGAAGAGAAAATATTCGGATTCTTGTACACATTTTTCCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

392

Amino Acids

44.88

Weight (kDa)

9.73

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	183
AccB7I	CCANNNNNTGG	2 cut(s)	19, 62
AccII	CGCG	1 cut(s)	197
AciI	CCGC	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	1023
AcuI	CTGAAG	1 cut(s)	704
AfaI	GTAC	1 cut(s)	1159
AfiI	CCNNNNNNNGG	3 cut(s)	19, 62, 387
AflIII	ACRYGT	1 cut(s)	556
AgsI	TTSAA	1 cut(s)	577
AjiI	CACGTC	1 cut(s)	557
AjnI	CCWGG	1 cut(s)	1129
AleI	CACNNNNGTG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	406, 438
AluBI	AGCT	8 cut(s)	667, 681, 718, 794, 913, 1006, 1061, 1088
AluI	AGCT	8 cut(s)	667, 681, 718, 794, 913, 1006, 1061, 1088
Alw21I	GWGCWC	1 cut(s)	669
Alw26I	GTCTC	3 cut(s)	346, 352, 422
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	3 cut(s)	23, 947, 1061
ApoI	RAATTY	1 cut(s)	1023
AseI	ATTAAT	2 cut(s)	234, 849
Asp700I	GAANNNNTTC	2 cut(s)	81, 1144
AspLEI	GCGC	1 cut(s)	199
AspS9I	GGNCC	2 cut(s)	472, 997
AsuII	TTCGAA	1 cut(s)	1027
AvaII	GGWCC	2 cut(s)	472, 997
BanII	GRGCYC	1 cut(s)	669
BauI	CACGAG	1 cut(s)	824
Bbv12I	GWGCWC	1 cut(s)	669
BbvI	GCAGC	3 cut(s)	10, 934, 1048
BccI	CCATC	4 cut(s)	316, 754, 833, 929
BceAI	ACGGC	1 cut(s)	337
BciT130I	CCWGG	1 cut(s)	1131
BciVI	GTATCC	1 cut(s)	387
BclI	TGATCA	1 cut(s)	820
BcoDI	GTCTC	3 cut(s)	346, 352, 422
BfaI	CTAG	5 cut(s)	174, 698, 1001, 1085, 1174
BfuI	GTATCC	1 cut(s)	387
BisI	GCNGC	4 cut(s)	24, 195, 948, 1062
BlsI	GCNGC	4 cut(s)	25, 196, 949, 1063
Bme1390I	CCNGG	1 cut(s)	1131
Bme18I	GGWCC	2 cut(s)	472, 997
BmgBI	CACGTC	1 cut(s)	557
BmgT120I	GGNCC	2 cut(s)	472, 997
BmiI	GGNNCC	3 cut(s)	193, 306, 474
BmrFI	CCNGG	1 cut(s)	1131
BmrI	ACTGGG	1 cut(s)	682
BmsI	GCATC	3 cut(s)	511, 528, 718
BmuI	ACTGGG	1 cut(s)	682
BoxI	GACNNNNGTC	1 cut(s)	249
Bpu14I	TTCGAA	1 cut(s)	1027
BpuEI	CTTGAG	2 cut(s)	29, 864
BsaJI	CCNNGG	5 cut(s)	147, 398, 477, 528, 1130
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 62, 387
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	677, 999
BseBI	CCWGG	1 cut(s)	1131
BseDI	CCNNGG	5 cut(s)	147, 398, 477, 528, 1130
BseGI	GGATG	2 cut(s)	502, 1100
BseLI	CCNNNNNNNGG	3 cut(s)	19, 62, 387
BseMII	CTCAG	1 cut(s)	489
BseNI	ACTGG	2 cut(s)	677, 999
BseXI	GCAGC	3 cut(s)	10, 934, 1048
BsgI	GTGCAG	1 cut(s)	1134
Bsh1236I	CGCG	1 cut(s)	197
BshFI	GGCC	1 cut(s)	380
BsiHKAI	GWGCWC	1 cut(s)	669
BsiSI	CCGG	1 cut(s)	5
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	3 cut(s)	19, 62, 387
BsmAI	GTCTC	3 cut(s)	346, 352, 422
BsmBI	CGTCTC	1 cut(s)	352
BsmFI	GGGAC	1 cut(s)	579
BsnI	GGCC	1 cut(s)	380
Bsp119I	TTCGAA	1 cut(s)	1027
Bsp1286I	GDGCHC	1 cut(s)	669
Bsp1407I	TGTACA	1 cut(s)	1157
Bsp143I	GATC	2 cut(s)	820, 1053
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	490
BspFNI	CGCG	1 cut(s)	197
BspLI	GGNNCC	3 cut(s)	193, 306, 474
BspT104I	TTCGAA	1 cut(s)	1027
BsrFI	RCCGGY	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	1157
BsrI	ACTGG	2 cut(s)	677, 999
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	5 cut(s)	147, 398, 477, 528, 1130
BssMI	GATC	2 cut(s)	820, 1053
BssSI	CACGAG	1 cut(s)	824
BssT1I	CCWWGG	3 cut(s)	398, 477, 528
Bst2BI	CACGAG	1 cut(s)	824
Bst2UI	CCWGG	1 cut(s)	1131
Bst4CI	ACNGT	4 cut(s)	60, 588, 808, 874
Bst6I	CTCTTC	2 cut(s)	858, 1130
BstAUI	TGTACA	1 cut(s)	1157
BstBI	TTCGAA	1 cut(s)	1027
BstDEI	CTNAG	3 cut(s)	332, 498, 551
BstDSI	CCRYGG	1 cut(s)	398
BstF5I	GGATG	2 cut(s)	502, 1100
BstFNI	CGCG	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	2 cut(s)	823, 1056
BstMAI	GTCTC	3 cut(s)	346, 352, 422
BstMBI	GATC	2 cut(s)	820, 1053
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 445, 635, 782, 791, 1094
BstNI	CCWGG	1 cut(s)	1131
BstNSI	RCATGY	1 cut(s)	53
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	1129
BstUI	CGCG	1 cut(s)	197
BstV1I	GCAGC	3 cut(s)	10, 934, 1048
BstXI	CCANNNNNNTGG	1 cut(s)	108
BsuI	GTATCC	1 cut(s)	387
BsuRI	GGCC	1 cut(s)	380
BtgI	CCRYGG	1 cut(s)	398
BtrI	CACGTC	1 cut(s)	557
BtsCI	GGATG	2 cut(s)	502, 1100
BtsI	GCAGTG	2 cut(s)	211, 1122
BtsIMutI	CAGTG	4 cut(s)	56, 211, 670, 1122
CfoI	GCGC	1 cut(s)	199
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	2 cut(s)	472, 997
Csp6I	GTAC	1 cut(s)	1158
CspCI	CAANNNNNGTGG	4 cut(s)	18, 53, 789, 824
CviAII	CATG	7 cut(s)	50, 214, 278, 399, 612, 725, 967
CviQI	GTAC	1 cut(s)	1158
DdeI	CTNAG	3 cut(s)	332, 498, 551
DpnI	GATC	2 cut(s)	822, 1055
DpnII	GATC	2 cut(s)	820, 1053
DrdI	GACNNNNNNGTC	1 cut(s)	183
DseDI	GACNNNNNNGTC	1 cut(s)	183
Eam1104I	CTCTTC	2 cut(s)	858, 1130
EarI	CTCTTC	2 cut(s)	858, 1130
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	3 cut(s)	398, 477, 528
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	2 cut(s)	472, 997
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	704
EcoICRI	GAGCTC	1 cut(s)	667
EcoO109I	RGGNCCY	1 cut(s)	472
EcoRII	CCWGG	1 cut(s)	1129
EcoT14I	CCWWGG	3 cut(s)	398, 477, 528
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	3 cut(s)	398, 477, 528
Esp3I	CGTCTC	1 cut(s)	352
FaeI	CATG	7 cut(s)	53, 217, 281, 402, 615, 728, 970
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	7 cut(s)	49, 213, 277, 398, 611, 724, 966
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	4 cut(s)	24, 195, 948, 1062
FokI	GGATG	2 cut(s)	489, 1087
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	4 cut(s)	24, 195, 948, 1062
FspBI	CTAG	5 cut(s)	174, 698, 1001, 1085, 1174
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	4 cut(s)	24, 195, 948, 1062
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	1 cut(s)	5
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	7 cut(s)	53, 217, 281, 402, 615, 728, 970
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HincII	GTYRAC	1 cut(s)	870
HindII	GTYRAC	1 cut(s)	870
HindIII	AAGCTT	1 cut(s)	911
HinfI	GANTC	6 cut(s)	40, 136, 326, 441, 524, 1151
HpaII	CCGG	1 cut(s)	5
Hpy166II	GTNNAC	4 cut(s)	656, 870, 1120, 1160
Hpy188I	TCNGA	5 cut(s)	313, 427, 499, 1058, 1150
Hpy188III	TCNNGA	1 cut(s)	824
Hpy8I	GTNNAC	4 cut(s)	656, 870, 1120, 1160
HpyAV	CCTTC	1 cut(s)	178
HpyCH4III	ACNGT	4 cut(s)	60, 588, 808, 874
HpyCH4IV	ACGT	2 cut(s)	556, 892
HpyCH4V	TGCA	4 cut(s)	92, 731, 1046, 1115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 445, 635, 782, 791, 1094
HpyF3I	CTNAG	3 cut(s)	332, 498, 551
HpySE526I	ACGT	2 cut(s)	556, 892
Hsp92II	CATG	7 cut(s)	53, 217, 281, 402, 615, 728, 970
HspAI	GCGC	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	2 cut(s)	820, 1053
LmnI	GCTCC	3 cut(s)	31, 191, 672
Lsp1109I	GCAGC	3 cut(s)	10, 934, 1048
LweI	GCATC	3 cut(s)	511, 528, 718
MaeI	CTAG	5 cut(s)	174, 698, 1001, 1085, 1174
MaeII	ACGT	2 cut(s)	556, 892
MaeIII	GTNAC	2 cut(s)	893, 969
MalI	GATC	2 cut(s)	822, 1055
MboI	GATC	2 cut(s)	820, 1053
MboII	GAAGA	8 cut(s)	353, 502, 537, 610, 848, 866, 875, 1147
MhlI	GDGCHC	1 cut(s)	669
MluCI	AATT	5 cut(s)	106, 223, 701, 846, 1023
MlyI	GAGTC	3 cut(s)	34, 320, 533
MmeI	TCCRAC	1 cut(s)	736
MnlI	CCTC	9 cut(s)	126, 157, 295, 384, 522, 625, 822, 888, 1114
MroXI	GAANNNNTTC	2 cut(s)	81, 1144
MseI	TTAA	7 cut(s)	234, 293, 467, 590, 849, 905, 929
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	5
MspR9I	CCNGG	1 cut(s)	1131
MvaI	CCWGG	1 cut(s)	1131
MvnI	CGCG	1 cut(s)	197
MwoI	GCNNNNNNNGC	6 cut(s)	215, 445, 635, 782, 791, 1094
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	2 cut(s)	820, 1053
NlaIII	CATG	7 cut(s)	53, 217, 281, 402, 615, 728, 970
NlaIV	GGNNCC	3 cut(s)	193, 306, 474
NmeAIII	GCCGAG	1 cut(s)	547
NmuCI	GTSAC	1 cut(s)	969
NspI	RCATGY	1 cut(s)	53
NspV	TTCGAA	1 cut(s)	1027
OliI	CACNNNNGTG	1 cut(s)	204
PdmI	GAANNNNTTC	2 cut(s)	81, 1144
PfeI	GAWTC	3 cut(s)	136, 441, 1151
PflMI	CCANNNNNTGG	2 cut(s)	19, 62
PkrI	GCNGC	4 cut(s)	25, 196, 949, 1063
PleI	GAGTC	3 cut(s)	34, 320, 532
PpsI	GAGTC	3 cut(s)	34, 320, 532
PpuMI	RGGWCCY	1 cut(s)	472
PshAI	GACNNNNGTC	1 cut(s)	249
PshBI	ATTAAT	2 cut(s)	234, 849
Psp124BI	GAGCTC	1 cut(s)	669
Psp5II	RGGWCCY	1 cut(s)	472
Psp6I	CCWGG	1 cut(s)	1129
PspGI	CCWGG	1 cut(s)	1129
PspN4I	GGNNCC	3 cut(s)	193, 306, 474
PspPI	GGNCC	2 cut(s)	472, 997
PspPPI	RGGWCCY	1 cut(s)	472
RsaI	GTAC	1 cut(s)	1159
RsaNI	GTAC	1 cut(s)	1158
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	669
SaqAI	TTAA	7 cut(s)	234, 293, 467, 590, 849, 905, 929
SatI	GCNGC	4 cut(s)	24, 195, 948, 1062
Sau3AI	GATC	2 cut(s)	820, 1053
Sau96I	GGNCC	2 cut(s)	472, 997
SchI	GAGTC	3 cut(s)	34, 320, 533
ScrFI	CCNGG	1 cut(s)	1131
SduI	GDGCHC	1 cut(s)	669
SfaNI	GCATC	3 cut(s)	511, 528, 718
SfuI	TTCGAA	1 cut(s)	1027
SinI	GGWCC	2 cut(s)	472, 997
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	44, 879
SmoI	CTYRAG	2 cut(s)	44, 879
Sse9I	AATT	5 cut(s)	106, 223, 701, 846, 1023
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	2 cut(s)	238, 1145
SspMI	CTAG	5 cut(s)	174, 698, 1001, 1085, 1174
SstI	GAGCTC	1 cut(s)	669
StyD4I	CCNGG	1 cut(s)	1129
StyI	CCWWGG	3 cut(s)	398, 477, 528
TaaI	ACNGT	4 cut(s)	60, 588, 808, 874
TaiI	ACGT	2 cut(s)	559, 895
TaqI	TCGA	2 cut(s)	264, 1027
TasI	AATT	5 cut(s)	106, 223, 701, 846, 1023
TatI	WGTACW	1 cut(s)	1157
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	136, 441, 1151
Tru1I	TTAA	7 cut(s)	234, 293, 467, 590, 849, 905, 929
Tru9I	TTAA	7 cut(s)	234, 293, 467, 590, 849, 905, 929
TscAI	CASTG	4 cut(s)	63, 211, 677, 1122
TseFI	GTSAC	1 cut(s)	969
TseI	GCWGC	3 cut(s)	23, 947, 1061
Tsp45I	GTSAC	1 cut(s)	969
TspDTI	ATGAA	4 cut(s)	170, 600, 867, 876
TspRI	CASTG	4 cut(s)	63, 211, 677, 1122
Van91I	CCANNNNNTGG	2 cut(s)	19, 62
VpaK11BI	GGWCC	2 cut(s)	472, 997
VspI	ATTAAT	2 cut(s)	234, 849
XapI	RAATTY	1 cut(s)	1023
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	2 cut(s)	81, 1144
XspI	CTAG	5 cut(s)	174, 698, 1001, 1085, 1174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.