RchiOBHm_Chr5g0031441

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0002997
Physical Location & Seq
Reverse (-)
25017834 .. 25022069
4236 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31070

Sequence Viewer

Length: 1203 bp
ATGATTGAAATCCATATGATTAACCAGTCTGTTATCACATTTTTGAGTTCTAACAGGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTTTGCCTCTGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTTCAGTTAATTGGTCAGAATGACTCTACAATAAGTATTAGCAAAGAAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATAAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAAGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGCTTGACAGAGAGACTTCCACAAATGATCAAGTTGCTAGTCGAAGGGACATAGTTAAATCGCAATTGCATATCTCAGCTTTGGAGAAATTGGATGCAGAGCTTATAAAGAGAGAAAAATTGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAATGGAACAAGCTATGGCAGCCCCATCTGTTGGGGTAGTAAACGAGAAACCAGGGATGCATACCCATACACTTCTGCAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

400

Amino Acids

46.18

Weight (kDa)

10.18

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 131 - 159 1.2e-06 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1049
AccB7I CCANNNNNTGG 1 cut(s) 1145
AciI CCGC 3 cut(s) 95, 113, 671
AcuI CTGAAG 1 cut(s) 740
AcyI GRCGYC 1 cut(s) 607
AfiI CCNNNNNNNGG 3 cut(s) 101, 649, 1145
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 4 cut(s) 8, 78, 151, 860
AjnI CCWGG 1 cut(s) 1165
AluBI AGCT 9 cut(s) 224, 717, 754, 827, 946, 1022, 1045, 1100, 1127
AluI AGCT 9 cut(s) 224, 717, 754, 827, 946, 1022, 1045, 1100, 1127
Alw26I GTCTC 3 cut(s) 458, 872, 950
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 6 cut(s) 307, 764, 815, 818, 1100, 1133
Asp700I GAANNNNTTC 1 cut(s) 638
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 1 cut(s) 499
BauI CACGAG 2 cut(s) 300, 822
BbvCI CCTCAGC 1 cut(s) 272
BbvI GCAGC 6 cut(s) 319, 751, 827, 830, 1087, 1145
BccI CCATC 1 cut(s) 1147
BceAI ACGGC 1 cut(s) 608
BciT130I CCWGG 1 cut(s) 1167
BclI TGATCA 2 cut(s) 85, 970
BcoDI GTCTC 3 cut(s) 458, 872, 950
BfaI CTAG 2 cut(s) 413, 981
BfmI CTRYAG 3 cut(s) 282, 765, 1190
BisI GCNGC 7 cut(s) 308, 672, 765, 816, 819, 1101, 1134
BlsI GCNGC 7 cut(s) 309, 673, 766, 817, 820, 1102, 1135
Bme1390I CCNGG 1 cut(s) 1167
BmgT120I GGNCC 1 cut(s) 499
BmrFI CCNGG 1 cut(s) 1167
BmsI GCATC 3 cut(s) 486, 1027, 1161
Bpu10I CCTNAGC 1 cut(s) 272
BsaAI YACGTR 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 607
BsaJI CCNNGG 5 cut(s) 434, 513, 564, 807, 1166
BsaXI ACNNNNNCTCC 2 cut(s) 317, 347
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 649, 1145
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 1167
BseDI CCNNGG 5 cut(s) 434, 513, 564, 807, 1166
BseGI GGATG 3 cut(s) 253, 1042, 1176
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 3 cut(s) 101, 649, 1145
BseMII CTCAG 3 cut(s) 161, 286, 1032
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 6 cut(s) 319, 751, 827, 830, 1087, 1145
BseYI CCCAGC 1 cut(s) 534
BsgI GTGCAG 1 cut(s) 480
BshFI GGCC 1 cut(s) 500
BslFI GGGAC 3 cut(s) 517, 525, 1004
BslI CCNNNNNNNGG 3 cut(s) 101, 649, 1145
BsmAI GTCTC 3 cut(s) 458, 872, 950
BsmFI GGGAC 3 cut(s) 517, 525, 1004
BsnI GGCC 1 cut(s) 500
Bsp143I GATC 4 cut(s) 85, 231, 935, 970
Bsp19I CCATGG 1 cut(s) 434
BspACI CCGC 3 cut(s) 95, 113, 671
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 3 cut(s) 162, 285, 1031
BspMAI CTGCAG 2 cut(s) 769, 1194
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 5 cut(s) 434, 513, 564, 807, 1166
BssMI GATC 4 cut(s) 85, 231, 935, 970
BssNI GRCGYC 1 cut(s) 607
BssSI CACGAG 2 cut(s) 300, 822
BssT1I CCWWGG 4 cut(s) 434, 513, 564, 807
Bst2BI CACGAG 2 cut(s) 300, 822
Bst2UI CCWGG 1 cut(s) 1167
Bst4CI ACNGT 1 cut(s) 624
Bst6I CTCTTC 2 cut(s) 644, 891
BstACI GRCGYC 1 cut(s) 607
BstAPI GCANNNNNTGC 1 cut(s) 851
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 762, 852, 1068
BstDEI CTNAG 6 cut(s) 170, 272, 587, 675, 1018, 1197
BstDSI CCRYGG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 253, 1042, 1176
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 4 cut(s) 88, 234, 938, 973
BstMAI GTCTC 3 cut(s) 458, 872, 950
BstMBI GATC 4 cut(s) 85, 231, 935, 970
BstMWI GCNNNNNNNGC 7 cut(s) 304, 481, 671, 812, 824, 851, 1133
BstNI CCWGG 1 cut(s) 1167
BstSCI CCNGG 1 cut(s) 1165
BstSFI CTRYAG 3 cut(s) 282, 765, 1190
BstV1I GCAGC 6 cut(s) 319, 751, 827, 830, 1087, 1145
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 434
BtsCI GGATG 3 cut(s) 253, 1042, 1176
BtsIMutI CAGTG 1 cut(s) 241
Cac8I GCNNGC 3 cut(s) 762, 852, 1068
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 499
CseI GACGC 2 cut(s) 527, 596
CviAII CATG 4 cut(s) 89, 244, 435, 648
DdeI CTNAG 6 cut(s) 170, 272, 587, 675, 1018, 1197
DpnI GATC 4 cut(s) 87, 233, 937, 972
DpnII GATC 4 cut(s) 85, 231, 935, 970
Eam1104I CTCTTC 2 cut(s) 644, 891
EarI CTCTTC 2 cut(s) 644, 891
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 4 cut(s) 434, 513, 564, 807
Eco57I CTGAAG 1 cut(s) 740
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 1 cut(s) 1165
EcoT14I CCWWGG 4 cut(s) 434, 513, 564, 807
EcoT22I ATGCAT 1 cut(s) 1176
ErhI CCWWGG 4 cut(s) 434, 513, 564, 807
FaeI CATG 4 cut(s) 92, 247, 438, 651
FaqI GGGAC 3 cut(s) 517, 525, 1004
FatI CATG 4 cut(s) 88, 243, 434, 647
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 2 cut(s) 85, 970
Fnu4HI GCNGC 7 cut(s) 308, 672, 765, 816, 819, 1101, 1134
FokI GGATG 3 cut(s) 260, 1049, 1183
Fsp4HI GCNGC 7 cut(s) 308, 672, 765, 816, 819, 1101, 1134
FspBI CTAG 2 cut(s) 413, 981
GlaI GCGC 1 cut(s) 476
GluI GCNGC 7 cut(s) 308, 672, 765, 816, 819, 1101, 1134
GsaI CCCAGC 1 cut(s) 538
HaeIII GGCC 1 cut(s) 500
HgaI GACGC 2 cut(s) 527, 596
HhaI GCGC 1 cut(s) 477
Hin1I GRCGYC 1 cut(s) 607
Hin1II CATG 4 cut(s) 92, 247, 438, 651
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HincII GTYRAC 1 cut(s) 903
HindII GTYRAC 1 cut(s) 903
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 3 cut(s) 175, 350, 560
Hpy166II GTNNAC 3 cut(s) 692, 903, 1156
Hpy188I TCNGA 3 cut(s) 171, 345, 912
Hpy8I GTNNAC 3 cut(s) 692, 903, 1156
HpyAV CCTTC 3 cut(s) 597, 835, 981
HpyCH4III ACNGT 1 cut(s) 624
HpyCH4IV ACGT 2 cut(s) 163, 315
HpyCH4V TGCA 8 cut(s) 229, 461, 767, 1012, 1040, 1085, 1174, 1192
HpyF10VI GCNNNNNNNGC 7 cut(s) 304, 481, 671, 812, 824, 851, 1133
HpyF3I CTNAG 6 cut(s) 170, 272, 587, 675, 1018, 1197
HpySE526I ACGT 2 cut(s) 163, 315
Hsp92I GRCGYC 1 cut(s) 607
Hsp92II CATG 4 cut(s) 92, 247, 438, 651
HspAI GCGC 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 85, 970
Kzo9I GATC 4 cut(s) 85, 231, 935, 970
LmnI GCTCC 3 cut(s) 73, 142, 221
Lsp1109I GCAGC 6 cut(s) 319, 751, 827, 830, 1087, 1145
LweI GCATC 3 cut(s) 486, 1027, 1161
MaeI CTAG 2 cut(s) 413, 981
MaeII ACGT 2 cut(s) 163, 315
MalI GATC 4 cut(s) 87, 233, 937, 972
MboI GATC 4 cut(s) 85, 231, 935, 970
MboII GAAGA 6 cut(s) 386, 538, 573, 631, 746, 908
MfeI CAATTG 1 cut(s) 1007
MluCI AATT 7 cut(s) 151, 336, 706, 737, 1007, 1031, 1061
MlyI GAGTC 2 cut(s) 344, 569
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 7 cut(s) 165, 196, 213, 281, 319, 490, 661
Mph1103I ATGCAT 1 cut(s) 1176
MroXI GAANNNNTTC 1 cut(s) 638
MseI TTAA 5 cut(s) 21, 335, 704, 927, 999
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 1167
MunI CAATTG 1 cut(s) 1007
MvaI CCWGG 1 cut(s) 1167
MwoI GCNNNNNNNGC 7 cut(s) 304, 481, 671, 812, 824, 851, 1133
NcoI CCATGG 1 cut(s) 434
NdeI CATATG 1 cut(s) 15
NdeII GATC 4 cut(s) 85, 231, 935, 970
NlaIII CATG 4 cut(s) 92, 247, 438, 651
NsiI ATGCAT 1 cut(s) 1176
PdmI GAANNNNTTC 1 cut(s) 638
PfeI GAWTC 1 cut(s) 175
PflMI CCANNNNNTGG 1 cut(s) 1145
PkrI GCNGC 7 cut(s) 309, 673, 766, 817, 820, 1102, 1135
PleI GAGTC 2 cut(s) 344, 568
PpsI GAGTC 2 cut(s) 344, 568
Ppu21I YACGTR 1 cut(s) 164
PsiI TTATAA 1 cut(s) 1049
Psp6I CCWGG 1 cut(s) 1165
PspFI CCCAGC 1 cut(s) 534
PspGI CCWGG 1 cut(s) 1165
PspPI GGNCC 1 cut(s) 499
PstI CTGCAG 2 cut(s) 769, 1194
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 5 cut(s) 21, 335, 704, 927, 999
SatI GCNGC 7 cut(s) 308, 672, 765, 816, 819, 1101, 1134
Sau3AI GATC 4 cut(s) 85, 231, 935, 970
Sau96I GGNCC 1 cut(s) 499
SchI GAGTC 2 cut(s) 344, 569
ScrFI CCNGG 1 cut(s) 1167
SfaNI GCATC 3 cut(s) 486, 1027, 1161
SfcI CTRYAG 3 cut(s) 282, 765, 1190
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 7 cut(s) 151, 336, 706, 737, 1007, 1031, 1061
SsiI CCGC 3 cut(s) 95, 113, 671
SspMI CTAG 2 cut(s) 413, 981
StyD4I CCNGG 1 cut(s) 1165
StyI CCWWGG 4 cut(s) 434, 513, 564, 807
TaaI ACNGT 1 cut(s) 624
TaiI ACGT 2 cut(s) 166, 318
TaqI TCGA 1 cut(s) 985
TasI AATT 7 cut(s) 151, 336, 706, 737, 1007, 1031, 1061
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 5 cut(s) 21, 335, 704, 927, 999
Tru9I TTAA 5 cut(s) 21, 335, 704, 927, 999
TscAI CASTG 1 cut(s) 241
TseI GCWGC 6 cut(s) 307, 764, 815, 818, 1100, 1133
TspDTI ATGAA 3 cut(s) 200, 909, 1068
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 241
Van91I CCANNNNNTGG 1 cut(s) 1145
XmnI GAANNNNTTC 1 cut(s) 638
XspI CTAG 2 cut(s) 413, 981
Zsp2I ATGCAT 1 cut(s) 1176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.