Rh5CG241500

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0002997
Physical Location & Seq
Reverse (-)
25083574 .. 25087808
4235 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG241500.1

Sequence Viewer

Length: 948 bp
ATGCCGTTCTTTCACCTGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACGGAACATTTGAATTATCATTTATGTGTTCTGAGGAATCGGTTTCCCTCGTTTGCCTCTGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAATGTAAGAAAGGAGAATCAGTTAATTGGTCAGAATGACTCTACAGTAAGTATTAGCAATGCAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATGAGAATATAAGGGAAGAATTGTATCTCCAACAGCTTCAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAAGAAGGCAAGGTGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGGTAATTGCTCATGAACCAAGATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

315

Amino Acids

36.41

Weight (kDa)

10.08

Isoelectric Point (pI)

57.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 122 - 150 8.9e-07 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 56, 74, 644
AcuI CTGAAG 1 cut(s) 713
AcyI GRCGYC 1 cut(s) 580
AfiI CCNNNNNNNGG 2 cut(s) 62, 622
AgsI TTSAA 3 cut(s) 39, 112, 833
AluBI AGCT 4 cut(s) 197, 690, 727, 800
AluI AGCT 4 cut(s) 197, 690, 727, 800
Alw26I GTCTC 2 cut(s) 431, 845
AoxI GGCC 1 cut(s) 471
ApeKI GCWGC 4 cut(s) 280, 737, 788, 791
Asp700I GAANNNNTTC 1 cut(s) 611
AspLEI GCGC 1 cut(s) 450
AspS9I GGNCC 1 cut(s) 472
AsuHPI GGTGA 1 cut(s) 5
BauI CACGAG 2 cut(s) 273, 795
BbvCI CCTCAGC 1 cut(s) 245
BbvI GCAGC 4 cut(s) 292, 724, 800, 803
BceAI ACGGC 1 cut(s) 581
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 431, 845
BfaI CTAG 1 cut(s) 386
BfmI CTRYAG 3 cut(s) 255, 327, 738
BisI GCNGC 5 cut(s) 281, 645, 738, 789, 792
BlsI GCNGC 5 cut(s) 282, 646, 739, 790, 793
BmgT120I GGNCC 1 cut(s) 472
BmsI GCATC 1 cut(s) 459
Bpu10I CCTNAGC 1 cut(s) 245
BsaHI GRCGYC 1 cut(s) 580
BsaJI CCNNGG 4 cut(s) 407, 486, 537, 780
BsaXI ACNNNNNCTCC 2 cut(s) 290, 320
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 622
Bse3DI GCAATG 1 cut(s) 349
BseDI CCNNGG 4 cut(s) 407, 486, 537, 780
BseGI GGATG 1 cut(s) 226
BseLI CCNNNNNNNGG 2 cut(s) 62, 622
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 3 cut(s) 8, 122, 259
BseRI GAGGAG 1 cut(s) 207
BseXI GCAGC 4 cut(s) 292, 724, 800, 803
BseYI CCCAGC 1 cut(s) 507
BsgI GTGCAG 1 cut(s) 453
BshFI GGCC 1 cut(s) 473
BslFI GGGAC 2 cut(s) 490, 498
BslI CCNNNNNNNGG 2 cut(s) 62, 622
BsmAI GTCTC 2 cut(s) 431, 845
BsmFI GGGAC 2 cut(s) 490, 498
BsnI GGCC 1 cut(s) 473
Bsp143I GATC 4 cut(s) 46, 204, 908, 938
Bsp19I CCATGG 1 cut(s) 407
BspACI CCGC 3 cut(s) 56, 74, 644
BspANI GGCC 1 cut(s) 473
BspCNI CTCAG 3 cut(s) 9, 123, 258
BspHI TCATGA 1 cut(s) 928
BspMAI CTGCAG 1 cut(s) 742
BsrDI GCAATG 1 cut(s) 349
BssECI CCNNGG 4 cut(s) 407, 486, 537, 780
BssMI GATC 4 cut(s) 46, 204, 908, 938
BssNI GRCGYC 1 cut(s) 580
BssSI CACGAG 2 cut(s) 273, 795
BssT1I CCWWGG 4 cut(s) 407, 486, 537, 780
Bst2BI CACGAG 2 cut(s) 273, 795
Bst4CI ACNGT 2 cut(s) 331, 597
Bst6I CTCTTC 2 cut(s) 617, 864
BstACI GRCGYC 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 824
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 5 cut(s) 17, 131, 245, 560, 648
BstDSI CCRYGG 1 cut(s) 407
BstF5I GGATG 1 cut(s) 226
BstHHI GCGC 1 cut(s) 450
BstKTI GATC 4 cut(s) 49, 207, 911, 941
BstMAI GTCTC 2 cut(s) 431, 845
BstMBI GATC 4 cut(s) 46, 204, 908, 938
BstMWI GCNNNNNNNGC 6 cut(s) 277, 454, 644, 785, 797, 824
BstSFI CTRYAG 3 cut(s) 255, 327, 738
BstV1I GCAGC 4 cut(s) 292, 724, 800, 803
BsuRI GGCC 1 cut(s) 473
BtgI CCRYGG 1 cut(s) 407
BtsCI GGATG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 735
CciI TCATGA 1 cut(s) 928
CfoI GCGC 1 cut(s) 450
Cfr13I GGNCC 1 cut(s) 472
CseI GACGC 2 cut(s) 500, 569
CviAII CATG 5 cut(s) 50, 217, 408, 621, 929
DdeI CTNAG 5 cut(s) 17, 131, 245, 560, 648
DpnI GATC 4 cut(s) 48, 206, 910, 940
DpnII GATC 4 cut(s) 46, 204, 908, 938
Eam1104I CTCTTC 2 cut(s) 617, 864
EarI CTCTTC 2 cut(s) 617, 864
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 4 cut(s) 407, 486, 537, 780
Eco57I CTGAAG 1 cut(s) 713
EcoO109I RGGNCCY 1 cut(s) 472
EcoT14I CCWWGG 4 cut(s) 407, 486, 537, 780
ErhI CCWWGG 4 cut(s) 407, 486, 537, 780
FaeI CATG 5 cut(s) 53, 220, 411, 624, 932
FaqI GGGAC 2 cut(s) 490, 498
FatI CATG 5 cut(s) 49, 216, 407, 620, 928
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 281, 645, 738, 789, 792
FokI GGATG 1 cut(s) 233
Fsp4HI GCNGC 5 cut(s) 281, 645, 738, 789, 792
FspBI CTAG 1 cut(s) 386
GlaI GCGC 1 cut(s) 449
GluI GCNGC 5 cut(s) 281, 645, 738, 789, 792
GsaI CCCAGC 1 cut(s) 511
HaeIII GGCC 1 cut(s) 473
HgaI GACGC 2 cut(s) 500, 569
HhaI GCGC 1 cut(s) 450
Hin1I GRCGYC 1 cut(s) 580
Hin1II CATG 5 cut(s) 53, 220, 411, 624, 932
Hin6I GCGC 1 cut(s) 448
HinP1I GCGC 1 cut(s) 448
HincII GTYRAC 1 cut(s) 876
HindII GTYRAC 1 cut(s) 876
HinfI GANTC 4 cut(s) 136, 301, 323, 533
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 665, 876
Hpy188I TCNGA 3 cut(s) 132, 318, 885
Hpy188III TCNNGA 1 cut(s) 929
Hpy8I GTNNAC 2 cut(s) 665, 876
HpyAV CCTTC 3 cut(s) 570, 808, 910
HpyCH4III ACNGT 2 cut(s) 331, 597
HpyCH4V TGCA 4 cut(s) 202, 347, 434, 740
HpyF10VI GCNNNNNNNGC 6 cut(s) 277, 454, 644, 785, 797, 824
HpyF3I CTNAG 5 cut(s) 17, 131, 245, 560, 648
Hsp92I GRCGYC 1 cut(s) 580
Hsp92II CATG 5 cut(s) 53, 220, 411, 624, 932
HspAI GCGC 1 cut(s) 448
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 46, 204, 908, 938
LmnI GCTCC 2 cut(s) 34, 194
LpnPI CCDG 6 cut(s) 29, 406, 521, 629, 639, 719
Lsp1109I GCAGC 4 cut(s) 292, 724, 800, 803
LweI GCATC 1 cut(s) 459
MaeI CTAG 1 cut(s) 386
MalI GATC 4 cut(s) 48, 206, 910, 940
MboI GATC 4 cut(s) 46, 204, 908, 938
MboII GAAGA 5 cut(s) 511, 546, 604, 719, 881
MluCI AATT 5 cut(s) 112, 309, 679, 710, 921
MlyI GAGTC 2 cut(s) 317, 542
MmeI TCCRAC 1 cut(s) 745
MnlI CCTC 8 cut(s) 126, 157, 166, 183, 185, 254, 463, 634
MroXI GAANNNNTTC 1 cut(s) 611
MseI TTAA 4 cut(s) 308, 677, 900, 946
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 58
MwoI GCNNNNNNNGC 6 cut(s) 277, 454, 644, 785, 797, 824
NcoI CCATGG 1 cut(s) 407
NdeII GATC 4 cut(s) 46, 204, 908, 938
NlaIII CATG 5 cut(s) 53, 220, 411, 624, 932
PagI TCATGA 1 cut(s) 928
PdmI GAANNNNTTC 1 cut(s) 611
PfeI GAWTC 2 cut(s) 136, 301
PkrI GCNGC 5 cut(s) 282, 646, 739, 790, 793
PleI GAGTC 2 cut(s) 317, 541
PpsI GAGTC 2 cut(s) 317, 541
PspFI CCCAGC 1 cut(s) 507
PspPI GGNCC 1 cut(s) 472
PstI CTGCAG 1 cut(s) 742
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 4 cut(s) 308, 677, 900, 946
SatI GCNGC 5 cut(s) 281, 645, 738, 789, 792
Sau3AI GATC 4 cut(s) 46, 204, 908, 938
Sau96I GGNCC 1 cut(s) 472
SchI GAGTC 2 cut(s) 317, 542
SfaNI GCATC 1 cut(s) 459
SfcI CTRYAG 3 cut(s) 255, 327, 738
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 5 cut(s) 112, 309, 679, 710, 921
SsiI CCGC 3 cut(s) 56, 74, 644
SspMI CTAG 1 cut(s) 386
StyI CCWWGG 4 cut(s) 407, 486, 537, 780
TaaI ACNGT 2 cut(s) 331, 597
TasI AATT 5 cut(s) 112, 309, 679, 710, 921
TauI GCSGC 1 cut(s) 647
TfiI GAWTC 2 cut(s) 136, 301
Tru1I TTAA 4 cut(s) 308, 677, 900, 946
Tru9I TTAA 4 cut(s) 308, 677, 900, 946
TscAI CASTG 1 cut(s) 214
TseI GCWGC 4 cut(s) 280, 737, 788, 791
TspDTI ATGAA 3 cut(s) 170, 882, 945
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 214
XmnI GAANNNNTTC 1 cut(s) 611
XspI CTAG 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.