Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014478.1

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

27645 .. 32197

Gene Structure 4553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014478.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

atgtttagaaagaaggtgacgccaaaccctacttggctatttgattccattcgcttatattggcaactcggattccatgatggtagtcgatatagtggaaaagccttcgctcacttcctcacgcctaatgtcatcgtcgatccaatggcctcccaacttgctcgccgttggattagggccggttttgcctttgagcttgtccaggacaattatagccgagttagattggataataggagcccaatccgagaaggccattacaggttattgcaaaacgggtctttctacttttctagttcgcctgctcactctcttatcttccaccttcaaatgccgttctttcacctgagattgtctgctccacattcaacccttgatcatgttccactgtttggttatgtggcggaagccaatcactttccacagaacacagagcatttgaattatcatttacgtgttctgaggaatcggtctccctcgtttgcctctgtctgttctttccctcaacttcattacattggagctatgcagatcagtgttggcatggatgagaaatgtgatattgctaacctcagccattctatagttagcagaaagccacgagagcagcaaaacgtaagaaaggaggttcagttaattggtcagaatgactctacagtaagtattagcaacgcagattacaaggaaagagaaagacgaaagaaaataggactagccaacaaaggaaaagtgccatggaacaaaggcaggaaacatagtgcagagacttgtgagcgcatcaagcgacaaaccatagaggccctaaaagaccccaaggttagaaagaagatgtcccagcgtccccgttctcatagtgtggagtccaaggcaaaaatgagttcttcacttagacggctttggggaaggcgcctaaaatggaaacagtcaagggagaaactcttcctgtcatgggtagaaagcatagcagaggctgctaagacaggtgggagtgaacaacaagagttaaattgggatagctatgagaatataagggaagaattatatctccaacagcttcagcaggctgcagaaaagaaaaaggcaagggaacgggcaaagatgagagccaaggaagcagcagcacgagctaaagtaaaaaagaaggcaaggcgtgctgttgaaaggagagtagatagtgagactaacaaagacaatgaagagttgacatctctgaaagggctgaaagttaagcagagatcaacgaagcttgacagagagacttccacaaatgatcaagttgctagtcgaagggacatagttaaatcgcaattgcatatctcagctttggagaaattggatgcagagcttataaagagagaaaaattgcgagcagaagtttcatttgcagaccagataagagctgccaaaaacagaaaaatggaacaagctatggcagccccatctgttggggtagtaaacgagaaaccagggatgcatacccatacacttctgcagtctcagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

500

Amino Acids

57.83

Weight (kDa)

10.23

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1349
AccB1I	GGYRCC	1 cut(s)	906
AccB7I	CCANNNNNTGG	2 cut(s)	392, 1445
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	1 cut(s)	134
AcuI	CTGAAG	1 cut(s)	1040
AcyI	GRCGYC	2 cut(s)	20, 907
AfiI	CCNNNNNNNGG	3 cut(s)	392, 949, 1445
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	4 cut(s)	329, 369, 442, 1160
AjnI	CCWGG	2 cut(s)	201, 1465
Alw26I	GTCTC	4 cut(s)	477, 758, 1172, 1250
AlwI	GGATC	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	4 cut(s)	147, 177, 253, 798
ApeKI	GCWGC	7 cut(s)	607, 971, 1064, 1115, 1118, 1400, 1433
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	2 cut(s)	777, 909
AspS9I	GGNCC	2 cut(s)	177, 799
AsuHPI	GGTGA	2 cut(s)	28, 335
BanI	GGYRCC	1 cut(s)	906
BanII	GRGCYC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	600, 1122
BbvCI	CCTCAGC	1 cut(s)	572
BbvI	GCAGC	7 cut(s)	619, 958, 1051, 1127, 1130, 1387, 1445
BccI	CCATC	2 cut(s)	74, 1447
BceAI	ACGGC	3 cut(s)	150, 319, 908
BciT130I	CCWGG	2 cut(s)	203, 1467
BclI	TGATCA	2 cut(s)	376, 1270
BcoDI	GTCTC	4 cut(s)	477, 758, 1172, 1250
BfaI	CTAG	3 cut(s)	294, 713, 1281
BfmI	CTRYAG	4 cut(s)	582, 654, 1065, 1490
BfoI	RGCGCY	1 cut(s)	910
BisI	GCNGC	7 cut(s)	608, 972, 1065, 1116, 1119, 1401, 1434
BlsI	GCNGC	7 cut(s)	609, 973, 1066, 1117, 1120, 1402, 1435
Bme1390I	CCNGG	2 cut(s)	203, 1467
BmgT120I	GGNCC	2 cut(s)	177, 799
BmiI	GGNNCC	2 cut(s)	239, 908
BmrFI	CCNGG	2 cut(s)	203, 1467
BmsI	GCATC	3 cut(s)	786, 1327, 1461
Bpu10I	CCTNAGC	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	455
BsaHI	GRCGYC	2 cut(s)	20, 907
BsaI	GGTCTC	1 cut(s)	477
BsaJI	CCNNGG	5 cut(s)	734, 813, 864, 1107, 1466
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bsc4I	CCNNNNNNNGG	3 cut(s)	392, 949, 1445
Bse118I	RCCGGY	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	203, 1467
BseDI	CCNNGG	5 cut(s)	734, 813, 864, 1107, 1466
BseGI	GGATG	3 cut(s)	553, 1342, 1476
BseLI	CCNNNNNNNGG	3 cut(s)	392, 949, 1445
BseMII	CTCAG	4 cut(s)	338, 452, 586, 1332
BseXI	GCAGC	7 cut(s)	619, 958, 1051, 1127, 1130, 1387, 1445
BseYI	CCCAGC	1 cut(s)	834
BsgI	GTGCAG	1 cut(s)	780
BshFI	GGCC	4 cut(s)	149, 179, 255, 800
BshNI	GGYRCC	1 cut(s)	906
BsiSI	CCGG	1 cut(s)	180
BslFI	GGGAC	3 cut(s)	817, 825, 1304
BslI	CCNNNNNNNGG	3 cut(s)	392, 949, 1445
BsmAI	GTCTC	4 cut(s)	477, 758, 1172, 1250
BsmFI	GGGAC	3 cut(s)	817, 825, 1304
BsnI	GGCC	4 cut(s)	149, 179, 255, 800
Bso31I	GGTCTC	1 cut(s)	477
Bsp1286I	GDGCHC	1 cut(s)	242
Bsp143I	GATC	5 cut(s)	139, 376, 531, 1235, 1270
Bsp19I	CCATGG	1 cut(s)	734
BspACI	CCGC	1 cut(s)	404
BspANI	GGCC	4 cut(s)	149, 179, 255, 800
BspCNI	CTCAG	4 cut(s)	339, 453, 585, 1331
BspLI	GGNNCC	2 cut(s)	239, 908
BspMAI	CTGCAG	2 cut(s)	1069, 1494
BspPI	GGATC	1 cut(s)	134
BspT107I	GGYRCC	1 cut(s)	906
BspTNI	GGTCTC	1 cut(s)	477
BsrFI	RCCGGY	1 cut(s)	179
BssAI	RCCGGY	1 cut(s)	179
BssECI	CCNNGG	5 cut(s)	734, 813, 864, 1107, 1466
BssMI	GATC	5 cut(s)	139, 376, 531, 1235, 1270
BssNI	GRCGYC	2 cut(s)	20, 907
BssSI	CACGAG	2 cut(s)	600, 1122
BssT1I	CCWWGG	4 cut(s)	734, 813, 864, 1107
Bst2BI	CACGAG	2 cut(s)	600, 1122
Bst2UI	CCWGG	2 cut(s)	203, 1467
Bst4CI	ACNGT	3 cut(s)	390, 658, 924
Bst6I	CTCTTC	2 cut(s)	944, 1191
BstACI	GRCGYC	2 cut(s)	20, 907
BstAPI	GCANNNNNTGC	2 cut(s)	971, 1151
BstBAI	YACGTR	1 cut(s)	455
BstC8I	GCNNGC	5 cut(s)	163, 303, 1062, 1152, 1368
BstDEI	CTNAG	7 cut(s)	347, 461, 572, 887, 975, 1318, 1497
BstDSI	CCRYGG	1 cut(s)	734
BstF5I	GGATG	3 cut(s)	553, 1342, 1476
BstH2I	RGCGCY	1 cut(s)	910
BstHHI	GCGC	2 cut(s)	777, 909
BstKTI	GATC	5 cut(s)	142, 379, 534, 1238, 1273
BstMAI	GTCTC	4 cut(s)	477, 758, 1172, 1250
BstMBI	GATC	5 cut(s)	139, 376, 531, 1235, 1270
BstMWI	GCNNNNNNNGC	8 cut(s)	185, 604, 781, 971, 1112, 1124, 1151, 1433
BstNI	CCWGG	2 cut(s)	203, 1467
BstSCI	CCNGG	2 cut(s)	201, 1465
BstSFI	CTRYAG	4 cut(s)	582, 654, 1065, 1490
BstV1I	GCAGC	7 cut(s)	619, 958, 1051, 1127, 1130, 1387, 1445
BsuRI	GGCC	4 cut(s)	149, 179, 255, 800
BtgI	CCRYGG	1 cut(s)	734
BtsCI	GGATG	3 cut(s)	553, 1342, 1476
BtsIMutI	CAGTG	2 cut(s)	386, 541
Cac8I	GCNNGC	5 cut(s)	163, 303, 1062, 1152, 1368
CaiI	CAGNNNCTG	1 cut(s)	971
CfoI	GCGC	2 cut(s)	777, 909
Cfr10I	RCCGGY	1 cut(s)	179
Cfr13I	GGNCC	2 cut(s)	177, 799
CseI	GACGC	2 cut(s)	28, 827
CviAII	CATG	5 cut(s)	77, 380, 544, 735, 948
DdeI	CTNAG	7 cut(s)	347, 461, 572, 887, 975, 1318, 1497
DinI	GGCGCC	1 cut(s)	908
DpnI	GATC	5 cut(s)	141, 378, 533, 1237, 1272
DpnII	GATC	5 cut(s)	139, 376, 531, 1235, 1270
Eam1104I	CTCTTC	2 cut(s)	944, 1191
EarI	CTCTTC	2 cut(s)	944, 1191
EciI	GGCGGA	1 cut(s)	419
Eco130I	CCWWGG	4 cut(s)	734, 813, 864, 1107
Eco24I	GRGCYC	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	477
Eco57I	CTGAAG	1 cut(s)	1040
EcoO109I	RGGNCCY	1 cut(s)	799
EcoRII	CCWGG	2 cut(s)	201, 1465
EcoT14I	CCWWGG	4 cut(s)	734, 813, 864, 1107
EcoT22I	ATGCAT	1 cut(s)	1476
EcoT38I	GRGCYC	1 cut(s)	242
EgeI	GGCGCC	1 cut(s)	908
EheI	GGCGCC	1 cut(s)	908
ErhI	CCWWGG	4 cut(s)	734, 813, 864, 1107
FaeI	CATG	5 cut(s)	80, 383, 547, 738, 951
FaqI	GGGAC	3 cut(s)	817, 825, 1304
FatI	CATG	5 cut(s)	76, 379, 543, 734, 947
FbaI	TGATCA	2 cut(s)	376, 1270
Fnu4HI	GCNGC	7 cut(s)	608, 972, 1065, 1116, 1119, 1401, 1434
FokI	GGATG	3 cut(s)	560, 1349, 1483
FriOI	GRGCYC	1 cut(s)	242
Fsp4HI	GCNGC	7 cut(s)	608, 972, 1065, 1116, 1119, 1401, 1434
FspBI	CTAG	3 cut(s)	294, 713, 1281
GlaI	GCGC	2 cut(s)	776, 908
GluI	GCNGC	7 cut(s)	608, 972, 1065, 1116, 1119, 1401, 1434
GsaI	CCCAGC	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	910
HaeIII	GGCC	4 cut(s)	149, 179, 255, 800
HapII	CCGG	1 cut(s)	180
HgaI	GACGC	2 cut(s)	28, 827
HhaI	GCGC	2 cut(s)	777, 909
Hin1I	GRCGYC	2 cut(s)	20, 907
Hin1II	CATG	5 cut(s)	80, 383, 547, 738, 951
Hin6I	GCGC	2 cut(s)	775, 907
HinP1I	GCGC	2 cut(s)	775, 907
HincII	GTYRAC	1 cut(s)	1203
HindII	GTYRAC	1 cut(s)	1203
HindIII	AAGCTT	1 cut(s)	1244
HinfI	GANTC	5 cut(s)	44, 72, 466, 650, 860
HpaII	CCGG	1 cut(s)	180
HphI	GGTGA	2 cut(s)	28, 335
Hpy166II	GTNNAC	3 cut(s)	992, 1203, 1456
Hpy188I	TCNGA	5 cut(s)	71, 248, 462, 645, 1212
Hpy8I	GTNNAC	3 cut(s)	992, 1203, 1456
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	7 cut(s)	7, 115, 245, 335, 897, 1135, 1281
HpyCH4III	ACNGT	3 cut(s)	390, 658, 924
HpyCH4IV	ACGT	2 cut(s)	454, 615
HpyCH4V	TGCA	9 cut(s)	271, 529, 761, 1067, 1312, 1340, 1385, 1474, 1492
HpyF10VI	GCNNNNNNNGC	8 cut(s)	185, 604, 781, 971, 1112, 1124, 1151, 1433
HpyF3I	CTNAG	7 cut(s)	347, 461, 572, 887, 975, 1318, 1497
HpySE526I	ACGT	2 cut(s)	454, 615
Hsp92I	GRCGYC	2 cut(s)	20, 907
Hsp92II	CATG	5 cut(s)	80, 383, 547, 738, 951
HspAI	GCGC	2 cut(s)	775, 907
KasI	GGCGCC	1 cut(s)	906
Ksp22I	TGATCA	2 cut(s)	376, 1270
Kzo9I	GATC	5 cut(s)	139, 376, 531, 1235, 1270
LmnI	GCTCC	3 cut(s)	237, 364, 521
Lsp1109I	GCAGC	7 cut(s)	619, 958, 1051, 1127, 1130, 1387, 1445
LweI	GCATC	3 cut(s)	786, 1327, 1461
MaeI	CTAG	3 cut(s)	294, 713, 1281
MaeII	ACGT	2 cut(s)	454, 615
MaeIII	GTNAC	1 cut(s)	16
MalI	GATC	5 cut(s)	141, 378, 533, 1237, 1272
MboI	GATC	5 cut(s)	139, 376, 531, 1235, 1270
MboII	GAAGA	6 cut(s)	310, 838, 873, 931, 1046, 1208
MfeI	CAATTG	1 cut(s)	1307
MhlI	GDGCHC	1 cut(s)	242
MluCI	AATT	8 cut(s)	208, 442, 636, 1006, 1037, 1307, 1331, 1361
Mly113I	GGCGCC	1 cut(s)	907
MlyI	GAGTC	2 cut(s)	644, 869
MmeI	TCCRAC	2 cut(s)	149, 1072
Mph1103I	ATGCAT	1 cut(s)	1476
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	4 cut(s)	635, 1004, 1227, 1299
MslI	CAYNNNNRTG	1 cut(s)	453
MspI	CCGG	1 cut(s)	180
MspR9I	CCNGG	2 cut(s)	203, 1467
MunI	CAATTG	1 cut(s)	1307
MvaI	CCWGG	2 cut(s)	203, 1467
MwoI	GCNNNNNNNGC	8 cut(s)	185, 604, 781, 971, 1112, 1124, 1151, 1433
NarI	GGCGCC	1 cut(s)	907
NcoI	CCATGG	1 cut(s)	734
NdeII	GATC	5 cut(s)	139, 376, 531, 1235, 1270
NlaIII	CATG	5 cut(s)	80, 383, 547, 738, 951
NlaIV	GGNNCC	2 cut(s)	239, 908
NmeAIII	GCCGAG	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	16
NsiI	ATGCAT	1 cut(s)	1476
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	3 cut(s)	44, 72, 466
PflMI	CCANNNNNTGG	2 cut(s)	392, 1445
PfoI	TCCNGGA	1 cut(s)	201
PkrI	GCNGC	7 cut(s)	609, 973, 1066, 1117, 1120, 1402, 1435
PleI	GAGTC	2 cut(s)	644, 868
PluTI	GGCGCC	1 cut(s)	910
PpsI	GAGTC	2 cut(s)	644, 868
Ppu21I	YACGTR	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	1349
Psp6I	CCWGG	2 cut(s)	201, 1465
PspFI	CCCAGC	1 cut(s)	834
PspGI	CCWGG	2 cut(s)	201, 1465
PspN4I	GGNNCC	2 cut(s)	239, 908
PspPI	GGNCC	2 cut(s)	177, 799
PstI	CTGCAG	2 cut(s)	1069, 1494
PstNI	CAGNNNCTG	1 cut(s)	971
RseI	CAYNNNNRTG	1 cut(s)	453
SaqAI	TTAA	4 cut(s)	635, 1004, 1227, 1299
SatI	GCNGC	7 cut(s)	608, 972, 1065, 1116, 1119, 1401, 1434
Sau3AI	GATC	5 cut(s)	139, 376, 531, 1235, 1270
Sau96I	GGNCC	2 cut(s)	177, 799
SchI	GAGTC	2 cut(s)	644, 869
ScrFI	CCNGG	2 cut(s)	203, 1467
SduI	GDGCHC	1 cut(s)	242
SfaNI	GCATC	3 cut(s)	786, 1327, 1461
SfcI	CTRYAG	4 cut(s)	582, 654, 1065, 1490
SfoI	GGCGCC	1 cut(s)	908
SmiMI	CAYNNNNRTG	1 cut(s)	453
Sse9I	AATT	8 cut(s)	208, 442, 636, 1006, 1037, 1307, 1331, 1361
SsiI	CCGC	1 cut(s)	404
SspDI	GGCGCC	1 cut(s)	906
SspMI	CTAG	3 cut(s)	294, 713, 1281
StyD4I	CCNGG	2 cut(s)	201, 1465
StyI	CCWWGG	4 cut(s)	734, 813, 864, 1107
TaaI	ACNGT	3 cut(s)	390, 658, 924
TaiI	ACGT	2 cut(s)	457, 618
TaqI	TCGA	3 cut(s)	88, 138, 1285
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	8 cut(s)	208, 442, 636, 1006, 1037, 1307, 1331, 1361
TfiI	GAWTC	3 cut(s)	44, 72, 466
Tru1I	TTAA	4 cut(s)	635, 1004, 1227, 1299
Tru9I	TTAA	4 cut(s)	635, 1004, 1227, 1299
TscAI	CASTG	2 cut(s)	393, 541
TseFI	GTSAC	1 cut(s)	16
TseI	GCWGC	7 cut(s)	607, 971, 1064, 1115, 1118, 1400, 1433
Tsp45I	GTSAC	1 cut(s)	16
TspDTI	ATGAA	3 cut(s)	500, 1209, 1368
TspRI	CASTG	2 cut(s)	393, 541
Van91I	CCANNNNNTGG	2 cut(s)	392, 1445
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	3 cut(s)	294, 713, 1281
Zsp2I	ATGCAT	1 cut(s)	1476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.