Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000110.1

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

37458 .. 40222

Gene Structure 2765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000110.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

atggaattttgccggatcaatccaattaccccgagtaaaattgaaaaagagagtccaggcccaatccgagaaggccattacaggttattgcaaaacgggtctttctacttttctagttcgcctgctcactctcttatcttccaccttcaaatgccgttctttcacctgagattgtctgctccacattcaacccttgatcatgttccactgtttggttatgtggcggaagccaatcactttccacagaacacagagcatttgaattatcatttacgtgttctgaggaatcggtctccctcgtttgcctctgtctgttctttccctcaacttcattacattggagctatgcagatcagtgttggcatggatgagaaatgtgatattgctaacctcagccattctatagttagcagaaagccacgagagcagcaaaacgtaagaaaggaggttcagttaattggtcagaatgactctacagtaagtattagcaacgcagattacaaggaaagagaaagacgaaagaaaataggactagccaacaaaggaaaagtgccatggaacaaaggcaggaaacatagtgcagagacttgtgagcgcatcaagcgacaaaccatagaggccctaaaagaccccaaggtgaaggcatttccttttatcacatcaatgactaagcatttttgtgctagttgcaatagattgcgactcttagctgatgggaacttcaaagtttgcttatttgatctttcagaattccaacttcggcatgctgatgaccataaactaggggaaataattggttcagcggtgaagaggaagaaagcttcgcatgctggaatgtttgacaatgcaaagatagcaaatagacccatgatacatattggtggttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

295

Amino Acids

33.57

Weight (kDa)

9.72

Isoelectric Point (pI)

49.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	212
AciI	CCGC	2 cut(s)	224, 803
AclWI	GGATC	1 cut(s)	23
AcsI	RAATTY	2 cut(s)	5, 749
AfiI	CCNNNNNNNGG	1 cut(s)	212
AflIII	ACRYGT	1 cut(s)	274
AgsI	TTSAA	5 cut(s)	44, 149, 189, 262, 724
AjnI	CCWGG	1 cut(s)	55
AluBI	AGCT	3 cut(s)	344, 710, 821
AluI	AGCT	3 cut(s)	344, 710, 821
Alw26I	GTCTC	2 cut(s)	297, 578
AlwI	GGATC	1 cut(s)	23
Ama87I	CYCGRG	1 cut(s)	31
AoxI	GGCC	3 cut(s)	58, 73, 618
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	2 cut(s)	5, 749
AspLEI	GCGC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	59, 619
AsuHPI	GGTGA	3 cut(s)	155, 649, 817
AvaI	CYCGRG	1 cut(s)	31
BauI	CACGAG	1 cut(s)	420
BbvCI	CCTCAGC	1 cut(s)	392
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	57
BclI	TGATCA	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	297, 578
BfaI	CTAG	4 cut(s)	114, 533, 684, 782
BfmI	CTRYAG	2 cut(s)	402, 474
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	57
BmeT110I	CYCGRG	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	59, 619
BmrFI	CCNGG	1 cut(s)	57
BmsI	GCATC	1 cut(s)	606
Bpu10I	CCTNAGC	1 cut(s)	392
BsaAI	YACGTR	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	297
BsaJI	CCNNGG	2 cut(s)	554, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	554, 633
BseGI	GGATG	1 cut(s)	373
BseLI	CCNNNNNNNGG	1 cut(s)	212
BseMII	CTCAG	3 cut(s)	158, 272, 406
BseXI	GCAGC	1 cut(s)	439
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	3 cut(s)	60, 75, 620
BsiHKCI	CYCGRG	1 cut(s)	31
BsiSI	CCGG	1 cut(s)	13
BslI	CCNNNNNNNGG	1 cut(s)	212
BsmAI	GTCTC	2 cut(s)	297, 578
BsnI	GGCC	3 cut(s)	60, 75, 620
Bso31I	GGTCTC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	31
Bsp143I	GATC	4 cut(s)	15, 196, 351, 739
Bsp19I	CCATGG	1 cut(s)	554
BspACI	CCGC	2 cut(s)	224, 803
BspANI	GGCC	3 cut(s)	60, 75, 620
BspCNI	CTCAG	3 cut(s)	159, 273, 405
BspPI	GGATC	1 cut(s)	23
BspTNI	GGTCTC	1 cut(s)	297
BssECI	CCNNGG	2 cut(s)	554, 633
BssMI	GATC	4 cut(s)	15, 196, 351, 739
BssSI	CACGAG	1 cut(s)	420
BssT1I	CCWWGG	2 cut(s)	554, 633
Bst2BI	CACGAG	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	57
Bst4CI	ACNGT	2 cut(s)	210, 478
Bst6I	CTCTTC	1 cut(s)	803
BstBAI	YACGTR	1 cut(s)	275
BstC8I	GCNNGC	3 cut(s)	123, 765, 828
BstDEI	CTNAG	5 cut(s)	167, 281, 392, 669, 706
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	1 cut(s)	373
BstHHI	GCGC	1 cut(s)	597
BstKTI	GATC	4 cut(s)	18, 199, 354, 742
BstMAI	GTCTC	2 cut(s)	297, 578
BstMBI	GATC	4 cut(s)	15, 196, 351, 739
BstMWI	GCNNNNNNNGC	4 cut(s)	424, 601, 827, 854
BstNI	CCWGG	1 cut(s)	57
BstNSI	RCATGY	2 cut(s)	767, 830
BstSCI	CCNGG	1 cut(s)	55
BstSFI	CTRYAG	2 cut(s)	402, 474
BstV1I	GCAGC	1 cut(s)	439
BsuRI	GGCC	3 cut(s)	60, 75, 620
BtgI	CCRYGG	1 cut(s)	554
BtsCI	GGATG	1 cut(s)	373
BtsIMutI	CAGTG	2 cut(s)	206, 361
Cac8I	GCNNGC	3 cut(s)	123, 765, 828
CfoI	GCGC	1 cut(s)	597
Cfr13I	GGNCC	2 cut(s)	59, 619
CviAII	CATG	6 cut(s)	200, 364, 555, 764, 827, 868
DdeI	CTNAG	5 cut(s)	167, 281, 392, 669, 706
DpnI	GATC	4 cut(s)	17, 198, 353, 741
DpnII	GATC	4 cut(s)	15, 196, 351, 739
Eam1104I	CTCTTC	1 cut(s)	803
EarI	CTCTTC	1 cut(s)	803
EciI	GGCGGA	1 cut(s)	239
Eco130I	CCWWGG	2 cut(s)	554, 633
Eco31I	GGTCTC	1 cut(s)	297
Eco88I	CYCGRG	1 cut(s)	31
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRI	GAATTC	1 cut(s)	749
EcoRII	CCWGG	1 cut(s)	55
EcoT14I	CCWWGG	2 cut(s)	554, 633
ErhI	CCWWGG	2 cut(s)	554, 633
FaeI	CATG	6 cut(s)	203, 367, 558, 767, 830, 871
FatI	CATG	6 cut(s)	199, 363, 554, 763, 826, 867
FbaI	TGATCA	1 cut(s)	196
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	1 cut(s)	380
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	4 cut(s)	114, 533, 684, 782
GlaI	GCGC	1 cut(s)	596
GluI	GCNGC	1 cut(s)	428
HaeIII	GGCC	3 cut(s)	60, 75, 620
HapII	CCGG	1 cut(s)	13
HhaI	GCGC	1 cut(s)	597
Hin1II	CATG	6 cut(s)	203, 367, 558, 767, 830, 871
Hin6I	GCGC	1 cut(s)	595
HinP1I	GCGC	1 cut(s)	595
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	4 cut(s)	52, 286, 470, 702
HpaII	CCGG	1 cut(s)	13
HphI	GGTGA	3 cut(s)	155, 649, 817
Hpy188I	TCNGA	4 cut(s)	68, 282, 465, 748
HpyAV	CCTTC	3 cut(s)	65, 155, 634
HpyCH4III	ACNGT	2 cut(s)	210, 478
HpyCH4IV	ACGT	2 cut(s)	274, 435
HpyCH4V	TGCA	5 cut(s)	91, 349, 581, 690, 848
HpyF10VI	GCNNNNNNNGC	4 cut(s)	424, 601, 827, 854
HpyF3I	CTNAG	5 cut(s)	167, 281, 392, 669, 706
HpySE526I	ACGT	2 cut(s)	274, 435
Hsp92II	CATG	6 cut(s)	203, 367, 558, 767, 830, 871
HspAI	GCGC	1 cut(s)	595
Ksp22I	TGATCA	1 cut(s)	196
Kzo9I	GATC	4 cut(s)	15, 196, 351, 739
LmnI	GCTCC	2 cut(s)	184, 341
LpnPI	CCDG	8 cut(s)	26, 42, 67, 69, 135, 179, 553, 816
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	4 cut(s)	114, 533, 684, 782
MaeII	ACGT	2 cut(s)	274, 435
MalI	GATC	4 cut(s)	17, 198, 353, 741
MboI	GATC	4 cut(s)	15, 196, 351, 739
MboII	GAAGA	3 cut(s)	130, 820, 826
MluCI	AATT	7 cut(s)	5, 24, 39, 262, 456, 749, 792
MlyI	GAGTC	3 cut(s)	61, 464, 696
MmeI	TCCRAC	1 cut(s)	778
MnlI	CCTC	8 cut(s)	276, 307, 316, 333, 401, 439, 610, 804
MseI	TTAA	2 cut(s)	455, 886
MslI	CAYNNNNRTG	5 cut(s)	273, 662, 678, 768, 879
MspA1I	CMGCKG	1 cut(s)	803
MspI	CCGG	1 cut(s)	13
MspR9I	CCNGG	1 cut(s)	57
MvaI	CCWGG	1 cut(s)	57
MwoI	GCNNNNNNNGC	4 cut(s)	424, 601, 827, 854
NcoI	CCATGG	1 cut(s)	554
NdeII	GATC	4 cut(s)	15, 196, 351, 739
NlaIII	CATG	6 cut(s)	203, 367, 558, 767, 830, 871
NspI	RCATGY	2 cut(s)	767, 830
PaeI	GCATGC	2 cut(s)	767, 830
PfeI	GAWTC	1 cut(s)	286
PflMI	CCANNNNNTGG	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	3 cut(s)	60, 464, 696
PpsI	GAGTC	3 cut(s)	60, 464, 696
Ppu21I	YACGTR	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	55
PspGI	CCWGG	1 cut(s)	55
PspPI	GGNCC	2 cut(s)	59, 619
RseI	CAYNNNNRTG	5 cut(s)	273, 662, 678, 768, 879
SaqAI	TTAA	2 cut(s)	455, 886
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	4 cut(s)	15, 196, 351, 739
Sau96I	GGNCC	2 cut(s)	59, 619
SchI	GAGTC	3 cut(s)	61, 464, 696
ScrFI	CCNGG	1 cut(s)	57
SfaNI	GCATC	1 cut(s)	606
SfcI	CTRYAG	2 cut(s)	402, 474
SmiMI	CAYNNNNRTG	5 cut(s)	273, 662, 678, 768, 879
SphI	GCATGC	2 cut(s)	767, 830
Sse9I	AATT	7 cut(s)	5, 24, 39, 262, 456, 749, 792
SsiI	CCGC	2 cut(s)	224, 803
SspMI	CTAG	4 cut(s)	114, 533, 684, 782
StyD4I	CCNGG	1 cut(s)	55
StyI	CCWWGG	2 cut(s)	554, 633
TaaI	ACNGT	2 cut(s)	210, 478
TaiI	ACGT	2 cut(s)	277, 438
TaqII	GACCGA	1 cut(s)	279
TasI	AATT	7 cut(s)	5, 24, 39, 262, 456, 749, 792
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	2 cut(s)	455, 886
Tru9I	TTAA	2 cut(s)	455, 886
TscAI	CASTG	2 cut(s)	213, 361
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	1 cut(s)	320
TspRI	CASTG	2 cut(s)	213, 361
Van91I	CCANNNNNTGG	1 cut(s)	212
XapI	RAATTY	2 cut(s)	5, 749
XceI	RCATGY	2 cut(s)	767, 830
XspI	CTAG	4 cut(s)	114, 533, 684, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.