Rh5BG217800

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0002997
Physical Location & Seq
Reverse (-)
25136321 .. 25141055
4735 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG217800.1

Sequence Viewer

Length: 984 bp
ATGATTGAAATCCATATGATTAACCAGTCTGTTATCACATTTTTGAGTTCTAACAGGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTTTCCCTCGTTTGCCTCTGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTTCAGTTAATTGGTCAGAATGACTCTACAGTAAGTATTAGCAACGCAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATGAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGGCTGCAGAGAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAAGAAGGCAACGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACGAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGGTAATTGCTCATGAACCAAGATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

327

Amino Acids

37.83

Weight (kDa)

10.2

Isoelectric Point (pI)

60.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 134 - 162 9.4e-07 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 859
AciI CCGC 3 cut(s) 95, 113, 680
AcuI CTGAAG 1 cut(s) 749
AcyI GRCGYC 1 cut(s) 616
AfiI CCNNNNNNNGG 2 cut(s) 101, 658
AflIII ACRYGT 2 cut(s) 163, 857
AgsI TTSAA 4 cut(s) 8, 78, 151, 869
AluBI AGCT 4 cut(s) 233, 726, 763, 836
AluI AGCT 4 cut(s) 233, 726, 763, 836
Alw26I GTCTC 2 cut(s) 467, 881
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 4 cut(s) 316, 773, 824, 827
Asp700I GAANNNNTTC 1 cut(s) 647
AspLEI GCGC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 508
BauI CACGAG 2 cut(s) 309, 831
BbvCI CCTCAGC 1 cut(s) 281
BbvI GCAGC 4 cut(s) 328, 760, 836, 839
BceAI ACGGC 1 cut(s) 617
BclI TGATCA 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 467, 881
BfaI CTAG 1 cut(s) 422
BfmI CTRYAG 3 cut(s) 291, 363, 774
BisI GCNGC 5 cut(s) 317, 681, 774, 825, 828
BlsI GCNGC 5 cut(s) 318, 682, 775, 826, 829
BmgT120I GGNCC 1 cut(s) 508
BmsI GCATC 1 cut(s) 495
Bpu10I CCTNAGC 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 164
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 616
BsaJI CCNNGG 4 cut(s) 443, 522, 573, 816
BsaXI ACNNNNNCTCC 2 cut(s) 326, 356
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 658
Bse1I ACTGG 1 cut(s) 25
Bse8I GATNNNNATC 1 cut(s) 8
BseDI CCNNGG 4 cut(s) 443, 522, 573, 816
BseGI GGATG 1 cut(s) 262
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 2 cut(s) 101, 658
BseMII CTCAG 2 cut(s) 161, 295
BseNI ACTGG 1 cut(s) 25
BseXI GCAGC 4 cut(s) 328, 760, 836, 839
BseYI CCCAGC 1 cut(s) 543
BsgI GTGCAG 1 cut(s) 489
Bsh1236I CGCG 1 cut(s) 859
BshFI GGCC 1 cut(s) 509
BslFI GGGAC 2 cut(s) 526, 534
BslI CCNNNNNNNGG 2 cut(s) 101, 658
BsmAI GTCTC 2 cut(s) 467, 881
BsmBI CGTCTC 1 cut(s) 881
BsmFI GGGAC 2 cut(s) 526, 534
BsnI GGCC 1 cut(s) 509
Bsp143I GATC 4 cut(s) 85, 240, 944, 974
Bsp19I CCATGG 1 cut(s) 443
BspACI CCGC 3 cut(s) 95, 113, 680
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 2 cut(s) 162, 294
BspFNI CGCG 1 cut(s) 859
BspHI TCATGA 1 cut(s) 964
BspMAI CTGCAG 1 cut(s) 778
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 4 cut(s) 443, 522, 573, 816
BssMI GATC 4 cut(s) 85, 240, 944, 974
BssNI GRCGYC 1 cut(s) 616
BssSI CACGAG 2 cut(s) 309, 831
BssT1I CCWWGG 4 cut(s) 443, 522, 573, 816
Bst2BI CACGAG 2 cut(s) 309, 831
Bst4CI ACNGT 2 cut(s) 367, 633
Bst6I CTCTTC 2 cut(s) 653, 900
BstACI GRCGYC 1 cut(s) 616
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBAI YACGTR 1 cut(s) 164
BstC8I GCNNGC 2 cut(s) 771, 861
BstDEI CTNAG 4 cut(s) 170, 281, 596, 684
BstDSI CCRYGG 1 cut(s) 443
BstF5I GGATG 1 cut(s) 262
BstFNI CGCG 1 cut(s) 859
BstHHI GCGC 1 cut(s) 486
BstKTI GATC 4 cut(s) 88, 243, 947, 977
BstMAI GTCTC 2 cut(s) 467, 881
BstMBI GATC 4 cut(s) 85, 240, 944, 974
BstMWI GCNNNNNNNGC 6 cut(s) 313, 490, 680, 821, 833, 860
BstSFI CTRYAG 3 cut(s) 291, 363, 774
BstUI CGCG 1 cut(s) 859
BstV1I GCAGC 4 cut(s) 328, 760, 836, 839
BsuRI GGCC 1 cut(s) 509
BtgI CCRYGG 1 cut(s) 443
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 250
Cac8I GCNNGC 2 cut(s) 771, 861
CciI TCATGA 1 cut(s) 964
CfoI GCGC 1 cut(s) 486
Cfr13I GGNCC 1 cut(s) 508
CseI GACGC 2 cut(s) 536, 605
CviAII CATG 5 cut(s) 89, 253, 444, 657, 965
DdeI CTNAG 4 cut(s) 170, 281, 596, 684
DpnI GATC 4 cut(s) 87, 242, 946, 976
DpnII GATC 4 cut(s) 85, 240, 944, 974
Eam1104I CTCTTC 2 cut(s) 653, 900
EarI CTCTTC 2 cut(s) 653, 900
EciI GGCGGA 1 cut(s) 128
Eco130I CCWWGG 4 cut(s) 443, 522, 573, 816
Eco57I CTGAAG 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 508
EcoT14I CCWWGG 4 cut(s) 443, 522, 573, 816
ErhI CCWWGG 4 cut(s) 443, 522, 573, 816
Esp3I CGTCTC 1 cut(s) 881
FaeI CATG 5 cut(s) 92, 256, 447, 660, 968
FaqI GGGAC 2 cut(s) 526, 534
FatI CATG 5 cut(s) 88, 252, 443, 656, 964
FauNDI CATATG 1 cut(s) 15
FbaI TGATCA 1 cut(s) 85
Fnu4HI GCNGC 5 cut(s) 317, 681, 774, 825, 828
FokI GGATG 1 cut(s) 269
Fsp4HI GCNGC 5 cut(s) 317, 681, 774, 825, 828
FspBI CTAG 1 cut(s) 422
GlaI GCGC 1 cut(s) 485
GluI GCNGC 5 cut(s) 317, 681, 774, 825, 828
GsaI CCCAGC 1 cut(s) 547
HaeIII GGCC 1 cut(s) 509
HgaI GACGC 2 cut(s) 536, 605
HhaI GCGC 1 cut(s) 486
Hin1I GRCGYC 1 cut(s) 616
Hin1II CATG 5 cut(s) 92, 256, 447, 660, 968
Hin6I GCGC 1 cut(s) 484
HinP1I GCGC 1 cut(s) 484
HincII GTYRAC 1 cut(s) 912
HindII GTYRAC 1 cut(s) 912
HinfI GANTC 3 cut(s) 175, 359, 569
Hpy166II GTNNAC 2 cut(s) 701, 912
Hpy188I TCNGA 3 cut(s) 171, 354, 921
Hpy188III TCNNGA 1 cut(s) 965
Hpy8I GTNNAC 2 cut(s) 701, 912
HpyAV CCTTC 3 cut(s) 606, 844, 946
HpyCH4III ACNGT 2 cut(s) 367, 633
HpyCH4IV ACGT 2 cut(s) 163, 324
HpyCH4V TGCA 3 cut(s) 238, 470, 776
HpyF10VI GCNNNNNNNGC 6 cut(s) 313, 490, 680, 821, 833, 860
HpyF3I CTNAG 4 cut(s) 170, 281, 596, 684
HpySE526I ACGT 2 cut(s) 163, 324
Hsp92I GRCGYC 1 cut(s) 616
Hsp92II CATG 5 cut(s) 92, 256, 447, 660, 968
HspAI GCGC 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 85
Kzo9I GATC 4 cut(s) 85, 240, 944, 974
LmnI GCTCC 3 cut(s) 73, 142, 230
LpnPI CCDG 7 cut(s) 38, 40, 442, 557, 665, 675, 755
Lsp1109I GCAGC 4 cut(s) 328, 760, 836, 839
LweI GCATC 1 cut(s) 495
MaeI CTAG 1 cut(s) 422
MaeII ACGT 2 cut(s) 163, 324
MalI GATC 4 cut(s) 87, 242, 946, 976
MboI GATC 4 cut(s) 85, 240, 944, 974
MboII GAAGA 6 cut(s) 547, 582, 640, 755, 793, 917
MluCI AATT 5 cut(s) 151, 345, 715, 746, 957
MluI ACGCGT 1 cut(s) 857
MlyI GAGTC 2 cut(s) 353, 578
MmeI TCCRAC 1 cut(s) 781
MnlI CCTC 8 cut(s) 165, 196, 205, 222, 290, 328, 499, 670
MroXI GAANNNNTTC 1 cut(s) 647
MseI TTAA 5 cut(s) 21, 344, 713, 936, 982
MslI CAYNNNNRTG 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 97
MvnI CGCG 1 cut(s) 859
MwoI GCNNNNNNNGC 6 cut(s) 313, 490, 680, 821, 833, 860
NcoI CCATGG 1 cut(s) 443
NdeI CATATG 1 cut(s) 15
NdeII GATC 4 cut(s) 85, 240, 944, 974
NlaIII CATG 5 cut(s) 92, 256, 447, 660, 968
PagI TCATGA 1 cut(s) 964
PdmI GAANNNNTTC 1 cut(s) 647
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 5 cut(s) 318, 682, 775, 826, 829
PleI GAGTC 2 cut(s) 353, 577
PpsI GAGTC 2 cut(s) 353, 577
Ppu21I YACGTR 1 cut(s) 164
PspFI CCCAGC 1 cut(s) 543
PspPI GGNCC 1 cut(s) 508
PstI CTGCAG 1 cut(s) 778
RseI CAYNNNNRTG 1 cut(s) 162
SaqAI TTAA 5 cut(s) 21, 344, 713, 936, 982
SatI GCNGC 5 cut(s) 317, 681, 774, 825, 828
Sau3AI GATC 4 cut(s) 85, 240, 944, 974
Sau96I GGNCC 1 cut(s) 508
SchI GAGTC 2 cut(s) 353, 578
SfaNI GCATC 1 cut(s) 495
SfcI CTRYAG 3 cut(s) 291, 363, 774
SmiMI CAYNNNNRTG 1 cut(s) 162
Sse9I AATT 5 cut(s) 151, 345, 715, 746, 957
SsiI CCGC 3 cut(s) 95, 113, 680
SspMI CTAG 1 cut(s) 422
StyI CCWWGG 4 cut(s) 443, 522, 573, 816
TaaI ACNGT 2 cut(s) 367, 633
TaiI ACGT 2 cut(s) 166, 327
TasI AATT 5 cut(s) 151, 345, 715, 746, 957
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 5 cut(s) 21, 344, 713, 936, 982
Tru9I TTAA 5 cut(s) 21, 344, 713, 936, 982
TscAI CASTG 1 cut(s) 250
TseI GCWGC 4 cut(s) 316, 773, 824, 827
TspDTI ATGAA 3 cut(s) 209, 918, 981
TspGWI ACGGA 1 cut(s) 155
TspRI CASTG 1 cut(s) 250
XmnI GAANNNNTTC 1 cut(s) 647
XspI CTAG 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.