Rh5DG223100

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0002997
Physical Location & Seq
Reverse (-)
25066939 .. 25071331
4393 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG223100.1

Sequence Viewer

Length: 936 bp
ATGCCGTTCCTTCACCTGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTTTGCCTCTGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTTCAGTTAATTGGTCAGAATGACTCTACAATAAGTATTAGCAAAGAAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATAAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAAGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGGTAATTGCTCATGAACCAAGATCAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

311

Amino Acids

36.16

Weight (kDa)

10.27

Isoelectric Point (pI)

60.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 118 - 146 8.8e-07 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 56, 74, 632
AcuI CTGAAG 1 cut(s) 701
AcyI GRCGYC 1 cut(s) 568
AfiI CCNNNNNNNGG 2 cut(s) 62, 610
AflIII ACRYGT 1 cut(s) 124
AgsI TTSAA 3 cut(s) 39, 112, 821
AluBI AGCT 4 cut(s) 185, 678, 715, 788
AluI AGCT 4 cut(s) 185, 678, 715, 788
Alw26I GTCTC 2 cut(s) 419, 833
AoxI GGCC 1 cut(s) 459
ApeKI GCWGC 4 cut(s) 268, 725, 776, 779
Asp700I GAANNNNTTC 1 cut(s) 599
AspLEI GCGC 1 cut(s) 438
AspS9I GGNCC 1 cut(s) 460
AsuHPI GGTGA 1 cut(s) 5
BauI CACGAG 2 cut(s) 261, 783
BbvCI CCTCAGC 1 cut(s) 233
BbvI GCAGC 4 cut(s) 280, 712, 788, 791
BceAI ACGGC 1 cut(s) 569
BclI TGATCA 1 cut(s) 46
BcoDI GTCTC 2 cut(s) 419, 833
BfaI CTAG 1 cut(s) 374
BfmI CTRYAG 2 cut(s) 243, 726
BisI GCNGC 5 cut(s) 269, 633, 726, 777, 780
BlsI GCNGC 5 cut(s) 270, 634, 727, 778, 781
BmgT120I GGNCC 1 cut(s) 460
BmsI GCATC 1 cut(s) 447
Bpu10I CCTNAGC 1 cut(s) 233
BsaAI YACGTR 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 568
BsaJI CCNNGG 4 cut(s) 395, 474, 525, 768
BsaXI ACNNNNNCTCC 2 cut(s) 278, 308
Bsc4I CCNNNNNNNGG 2 cut(s) 62, 610
BseDI CCNNGG 4 cut(s) 395, 474, 525, 768
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 62, 610
BseMII CTCAG 3 cut(s) 8, 122, 247
BseXI GCAGC 4 cut(s) 280, 712, 788, 791
BseYI CCCAGC 1 cut(s) 495
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 1 cut(s) 461
BslFI GGGAC 2 cut(s) 478, 486
BslI CCNNNNNNNGG 2 cut(s) 62, 610
BsmAI GTCTC 2 cut(s) 419, 833
BsmFI GGGAC 2 cut(s) 478, 486
BsnI GGCC 1 cut(s) 461
Bsp143I GATC 4 cut(s) 46, 192, 896, 926
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 3 cut(s) 56, 74, 632
BspANI GGCC 1 cut(s) 461
BspCNI CTCAG 3 cut(s) 9, 123, 246
BspHI TCATGA 1 cut(s) 916
BspMAI CTGCAG 1 cut(s) 730
BssECI CCNNGG 4 cut(s) 395, 474, 525, 768
BssMI GATC 4 cut(s) 46, 192, 896, 926
BssNI GRCGYC 1 cut(s) 568
BssSI CACGAG 2 cut(s) 261, 783
BssT1I CCWWGG 4 cut(s) 395, 474, 525, 768
Bst2BI CACGAG 2 cut(s) 261, 783
Bst4CI ACNGT 1 cut(s) 585
Bst6I CTCTTC 2 cut(s) 605, 852
BstACI GRCGYC 1 cut(s) 568
BstAPI GCANNNNNTGC 1 cut(s) 812
BstBAI YACGTR 1 cut(s) 125
BstC8I GCNNGC 2 cut(s) 723, 813
BstDEI CTNAG 5 cut(s) 17, 131, 233, 548, 636
BstDSI CCRYGG 1 cut(s) 395
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 438
BstKTI GATC 4 cut(s) 49, 195, 899, 929
BstMAI GTCTC 2 cut(s) 419, 833
BstMBI GATC 4 cut(s) 46, 192, 896, 926
BstMWI GCNNNNNNNGC 6 cut(s) 265, 442, 632, 773, 785, 812
BstSFI CTRYAG 2 cut(s) 243, 726
BstV1I GCAGC 4 cut(s) 280, 712, 788, 791
BsuRI GGCC 1 cut(s) 461
BtgI CCRYGG 1 cut(s) 395
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 202
Cac8I GCNNGC 2 cut(s) 723, 813
CciI TCATGA 1 cut(s) 916
CfoI GCGC 1 cut(s) 438
Cfr13I GGNCC 1 cut(s) 460
CseI GACGC 2 cut(s) 488, 557
CviAII CATG 5 cut(s) 50, 205, 396, 609, 917
DdeI CTNAG 5 cut(s) 17, 131, 233, 548, 636
DpnI GATC 4 cut(s) 48, 194, 898, 928
DpnII GATC 4 cut(s) 46, 192, 896, 926
Eam1104I CTCTTC 2 cut(s) 605, 852
EarI CTCTTC 2 cut(s) 605, 852
EciI GGCGGA 1 cut(s) 89
Eco130I CCWWGG 4 cut(s) 395, 474, 525, 768
Eco57I CTGAAG 1 cut(s) 701
EcoO109I RGGNCCY 1 cut(s) 460
EcoT14I CCWWGG 4 cut(s) 395, 474, 525, 768
ErhI CCWWGG 4 cut(s) 395, 474, 525, 768
FaeI CATG 5 cut(s) 53, 208, 399, 612, 920
FaqI GGGAC 2 cut(s) 478, 486
FatI CATG 5 cut(s) 49, 204, 395, 608, 916
FbaI TGATCA 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 269, 633, 726, 777, 780
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 269, 633, 726, 777, 780
FspBI CTAG 1 cut(s) 374
GlaI GCGC 1 cut(s) 437
GluI GCNGC 5 cut(s) 269, 633, 726, 777, 780
GsaI CCCAGC 1 cut(s) 499
HaeIII GGCC 1 cut(s) 461
HgaI GACGC 2 cut(s) 488, 557
HhaI GCGC 1 cut(s) 438
Hin1I GRCGYC 1 cut(s) 568
Hin1II CATG 5 cut(s) 53, 208, 399, 612, 920
Hin6I GCGC 1 cut(s) 436
HinP1I GCGC 1 cut(s) 436
HincII GTYRAC 1 cut(s) 864
HindII GTYRAC 1 cut(s) 864
HinfI GANTC 3 cut(s) 136, 311, 521
HphI GGTGA 1 cut(s) 5
Hpy166II GTNNAC 2 cut(s) 653, 864
Hpy188I TCNGA 3 cut(s) 132, 306, 873
Hpy188III TCNNGA 1 cut(s) 917
Hpy8I GTNNAC 2 cut(s) 653, 864
HpyAV CCTTC 4 cut(s) 20, 558, 796, 898
HpyCH4III ACNGT 1 cut(s) 585
HpyCH4IV ACGT 2 cut(s) 124, 276
HpyCH4V TGCA 3 cut(s) 190, 422, 728
HpyF10VI GCNNNNNNNGC 6 cut(s) 265, 442, 632, 773, 785, 812
HpyF3I CTNAG 5 cut(s) 17, 131, 233, 548, 636
HpySE526I ACGT 2 cut(s) 124, 276
Hsp92I GRCGYC 1 cut(s) 568
Hsp92II CATG 5 cut(s) 53, 208, 399, 612, 920
HspAI GCGC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 46
Kzo9I GATC 4 cut(s) 46, 192, 896, 926
LmnI GCTCC 3 cut(s) 34, 103, 182
LpnPI CCDG 6 cut(s) 29, 394, 509, 617, 627, 707
Lsp1109I GCAGC 4 cut(s) 280, 712, 788, 791
LweI GCATC 1 cut(s) 447
MaeI CTAG 1 cut(s) 374
MaeII ACGT 2 cut(s) 124, 276
MalI GATC 4 cut(s) 48, 194, 898, 928
MboI GATC 4 cut(s) 46, 192, 896, 926
MboII GAAGA 6 cut(s) 347, 499, 534, 592, 707, 869
MluCI AATT 5 cut(s) 112, 297, 667, 698, 909
MlyI GAGTC 2 cut(s) 305, 530
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 7 cut(s) 126, 157, 174, 242, 280, 451, 622
MroXI GAANNNNTTC 1 cut(s) 599
MseI TTAA 4 cut(s) 296, 665, 888, 934
MslI CAYNNNNRTG 1 cut(s) 123
MspA1I CMGCKG 1 cut(s) 58
MwoI GCNNNNNNNGC 6 cut(s) 265, 442, 632, 773, 785, 812
NcoI CCATGG 1 cut(s) 395
NdeII GATC 4 cut(s) 46, 192, 896, 926
NlaIII CATG 5 cut(s) 53, 208, 399, 612, 920
PagI TCATGA 1 cut(s) 916
PdmI GAANNNNTTC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 136
PkrI GCNGC 5 cut(s) 270, 634, 727, 778, 781
PleI GAGTC 2 cut(s) 305, 529
PpsI GAGTC 2 cut(s) 305, 529
Ppu21I YACGTR 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 495
PspPI GGNCC 1 cut(s) 460
PstI CTGCAG 1 cut(s) 730
RseI CAYNNNNRTG 1 cut(s) 123
SaqAI TTAA 4 cut(s) 296, 665, 888, 934
SatI GCNGC 5 cut(s) 269, 633, 726, 777, 780
Sau3AI GATC 4 cut(s) 46, 192, 896, 926
Sau96I GGNCC 1 cut(s) 460
SchI GAGTC 2 cut(s) 305, 530
SfaNI GCATC 1 cut(s) 447
SfcI CTRYAG 2 cut(s) 243, 726
SmiMI CAYNNNNRTG 1 cut(s) 123
Sse9I AATT 5 cut(s) 112, 297, 667, 698, 909
SsiI CCGC 3 cut(s) 56, 74, 632
SspMI CTAG 1 cut(s) 374
StyI CCWWGG 4 cut(s) 395, 474, 525, 768
TaaI ACNGT 1 cut(s) 585
TaiI ACGT 2 cut(s) 127, 279
TasI AATT 5 cut(s) 112, 297, 667, 698, 909
TauI GCSGC 1 cut(s) 635
TfiI GAWTC 1 cut(s) 136
Tru1I TTAA 4 cut(s) 296, 665, 888, 934
Tru9I TTAA 4 cut(s) 296, 665, 888, 934
TscAI CASTG 1 cut(s) 202
TseI GCWGC 4 cut(s) 268, 725, 776, 779
TspDTI ATGAA 3 cut(s) 161, 870, 933
TspGWI ACGGA 1 cut(s) 116
TspRI CASTG 1 cut(s) 202
XmnI GAANNNNTTC 1 cut(s) 599
XspI CTAG 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.