RLG00000033307

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0002997
Physical Location & Seq
Reverse (-)
25552296 .. 25557596
5301 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033307

Sequence Viewer

Length: 1668 bp
ATGAGAGAGGTTCTCTTGGACTTGTGGTCATCAGTCTCCGAGTACTTGAGCACTCTGTCTTTGATATCATCATCGGTCTCAATCTCCACGTTTGAGCAACATATCCACAACGACCTTTTCTTGAAGAAAAACCCGCACCTTTTCTTCTTCTTCTTCTTCATCTTCTTCTTCTCGTACTCCGAGGAATCGATGATCAGGGAAACATCTGCGGTGGGTTCGGACACCATCGGAGGGTTGAATTTAGTAAAGAAGGTGACGCCGAACCCTCCCTGGCTATTTGATTCCATTACTCACTTCCTCACGCCTAATGTCATCGTCGATGCAATGGCCTCCCAACTTGCTCGCCGTTGGATTAGGGCCGGTTTTGCCTTTGAGCTTGTCCAGGACAATTATAGCCGAGTTACATTGGATAATTGGAGTATGCTTTGGCTGCTTGAGGTTATTGCAAAACGGGTCTTTCTGGTTCGCCTGCTCGCTCTTATCTTCCACCTTCAAATGCCGTTCTTTCACCTGAGATTGTCTGCTCCACATTCAACCCTTGATCATGTTCTGCTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACGGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTCTCCCTCGTTTGCCTCTATCTGTTCTTTCCCTCAACTTCATTACGTTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCCAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTTCAGTTAATTGGTCAGAATGACTCTACAGTAAGTATTAGCAACGAAGATTCCAAGGAAAGAGAGAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCACAGCGTCCCCGTTCTCATAGTGTGGAGTCTAAGGCAAAAATGAGTTCTTCACTTAGACGTCTTTGGGGAAGGCGTCTAAAATGGAAACGGTCAAGGGAGAAACTCTTCCTGTCATGGATAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATGAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGTCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCAAAGGAAGCAGCAGCACAAGCTAAAGTAAAAAAGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATGGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGCTTGACAGAGAGACTTCCACAAATGATCAAGTTGCTAGTCGAAGGGATATAGTTAAATCGCAATTGCATATCTCAGCTTTGGAGAAATTGGATGCAGAGCTTATAAAGAGAGAAAAATTGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAATGGAACAAGCTATGGCAGCCCCATCTGTTGGGGTAGTAAACGAGAAACCAGGGATGCATACCCATACACTTCTGCAGTCTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

556

Amino Acids

64.06

Weight (kDa)

9.95

Isoelectric Point (pI)

55.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUMOD3 PF07460 286 - 314 1.8e-06 NUMOD3 motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1514
AatII GACGTC 1 cut(s) 1060
AccB7I CCANNNNNTGG 1 cut(s) 1610
AciI CCGC 4 cut(s) 134, 209, 569, 1136
AcsI RAATTY 1 cut(s) 238
AcuI CTGAAG 1 cut(s) 1205
AcyI GRCGYC 3 cut(s) 257, 1057, 1072
AfaI GTAC 2 cut(s) 44, 176
AfiI CCNNNNNNNGG 2 cut(s) 231, 1610
AflIII ACRYGT 1 cut(s) 619
AgsI TTSAA 6 cut(s) 124, 238, 494, 534, 607, 1325
AhdI GACNNNNNGTC 1 cut(s) 25
AjnI CCWGG 3 cut(s) 269, 381, 1630
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 7 cut(s) 40, 82, 642, 853, 923, 1337, 1415
AoxI GGCC 3 cut(s) 327, 357, 963
ApeKI GCWGC 6 cut(s) 430, 772, 1280, 1283, 1565, 1598
ApoI RAATTY 1 cut(s) 238
Asp700I GAANNNNTTC 1 cut(s) 1103
AspLEI GCGC 1 cut(s) 942
AspS9I GGNCC 2 cut(s) 357, 964
AsuHPI GGTGA 3 cut(s) 265, 500, 1352
BauI CACGAG 1 cut(s) 765
Bbv12I GWGCWC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 737
BbvI GCAGC 6 cut(s) 417, 784, 1292, 1295, 1552, 1610
BccI CCATC 3 cut(s) 233, 1331, 1612
BceAI ACGGC 2 cut(s) 330, 484
BciT130I CCWGG 3 cut(s) 271, 383, 1632
BclI TGATCA 3 cut(s) 192, 541, 1435
BcoDI GTCTC 7 cut(s) 40, 82, 642, 853, 923, 1337, 1415
BfaI CTAG 2 cut(s) 878, 1446
BfmI CTRYAG 4 cut(s) 747, 819, 1230, 1655
BisI GCNGC 7 cut(s) 431, 773, 1137, 1281, 1284, 1566, 1599
BlsI GCNGC 7 cut(s) 432, 774, 1138, 1282, 1285, 1567, 1600
BmcAI AGTACT 1 cut(s) 44
Bme1390I CCNGG 3 cut(s) 271, 383, 1632
BmeRI GACNNNNNGTC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 357, 964
BmrFI CCNGG 3 cut(s) 271, 383, 1632
BmsI GCATC 4 cut(s) 310, 951, 1492, 1626
BplI GAGNNNNNCTC 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 737
BpuEI CTTGAG 2 cut(s) 67, 455
Bsa29I ATCGAT 1 cut(s) 188
BsaAI YACGTR 1 cut(s) 620
BsaHI GRCGYC 3 cut(s) 257, 1057, 1072
BsaI GGTCTC 2 cut(s) 82, 642
BsaJI CCNNGG 6 cut(s) 180, 269, 846, 899, 978, 1631
BsaXI ACNNNNNCTCC 2 cut(s) 782, 812
Bsc4I CCNNNNNNNGG 2 cut(s) 231, 1610
Bse118I RCCGGY 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 330
BseBI CCWGG 3 cut(s) 271, 383, 1632
BseCI ATCGAT 1 cut(s) 188
BseDI CCNNGG 6 cut(s) 180, 269, 846, 899, 978, 1631
BseGI GGATG 3 cut(s) 718, 1507, 1641
BseLI CCNNNNNNNGG 2 cut(s) 231, 1610
BseMI GCAATG 1 cut(s) 330
BseMII CTCAG 4 cut(s) 503, 617, 751, 1497
BseXI GCAGC 6 cut(s) 417, 784, 1292, 1295, 1552, 1610
BsgI GTGCAG 1 cut(s) 945
BshFI GGCC 3 cut(s) 329, 359, 965
BshVI ATCGAT 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 990
BslI CCNNNNNNNGG 2 cut(s) 231, 1610
BsmAI GTCTC 7 cut(s) 40, 82, 642, 853, 923, 1337, 1415
BsmBI CGTCTC 1 cut(s) 853
BsmFI GGGAC 1 cut(s) 990
BsnI GGCC 3 cut(s) 329, 359, 965
Bso31I GGTCTC 2 cut(s) 82, 642
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 5 cut(s) 192, 541, 696, 1400, 1435
Bsp19I CCATGG 1 cut(s) 899
BspACI CCGC 4 cut(s) 134, 209, 569, 1136
BspANI GGCC 3 cut(s) 329, 359, 965
BspCNI CTCAG 4 cut(s) 504, 618, 750, 1496
BspDI ATCGAT 1 cut(s) 188
BspMAI CTGCAG 2 cut(s) 1234, 1659
BspTNI GGTCTC 2 cut(s) 82, 642
BsrDI GCAATG 1 cut(s) 330
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 6 cut(s) 180, 269, 846, 899, 978, 1631
BssMI GATC 5 cut(s) 192, 541, 696, 1400, 1435
BssNI GRCGYC 3 cut(s) 257, 1057, 1072
BssSI CACGAG 1 cut(s) 765
BssT1I CCWWGG 3 cut(s) 846, 899, 978
Bst2BI CACGAG 1 cut(s) 765
Bst2UI CCWGG 3 cut(s) 271, 383, 1632
Bst4CI ACNGT 2 cut(s) 823, 1089
Bst6I CTCTTC 2 cut(s) 1109, 1356
BstACI GRCGYC 3 cut(s) 257, 1057, 1072
BstAPI GCANNNNNTGC 1 cut(s) 1316
BstBAI YACGTR 1 cut(s) 620
BstC8I GCNNGC 5 cut(s) 343, 470, 474, 1317, 1533
BstDEI CTNAG 8 cut(s) 512, 626, 737, 1029, 1052, 1140, 1483, 1662
BstDSI CCRYGG 1 cut(s) 899
BstF5I GGATG 3 cut(s) 718, 1507, 1641
BstHHI GCGC 1 cut(s) 942
BstKTI GATC 5 cut(s) 195, 544, 699, 1403, 1438
BstMAI GTCTC 7 cut(s) 40, 82, 642, 853, 923, 1337, 1415
BstMBI GATC 5 cut(s) 192, 541, 696, 1400, 1435
BstMWI GCNNNNNNNGC 9 cut(s) 365, 430, 769, 946, 1136, 1277, 1289, 1316, 1598
BstNI CCWGG 3 cut(s) 271, 383, 1632
BstSCI CCNGG 3 cut(s) 269, 381, 1630
BstSFI CTRYAG 4 cut(s) 747, 819, 1230, 1655
BstV1I GCAGC 6 cut(s) 417, 784, 1292, 1295, 1552, 1610
Bsu15I ATCGAT 1 cut(s) 188
BsuRI GGCC 3 cut(s) 329, 359, 965
BsuTUI ATCGAT 1 cut(s) 188
BtgI CCRYGG 1 cut(s) 899
BtsCI GGATG 3 cut(s) 718, 1507, 1641
BtsIMutI CAGTG 1 cut(s) 706
Cac8I GCNNGC 5 cut(s) 343, 470, 474, 1317, 1533
CfoI GCGC 1 cut(s) 942
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 357, 964
ClaI ATCGAT 1 cut(s) 188
CseI GACGC 3 cut(s) 265, 992, 1061
Csp6I GTAC 2 cut(s) 43, 175
CviAII CATG 4 cut(s) 545, 709, 900, 1113
CviQI GTAC 2 cut(s) 43, 175
DdeI CTNAG 8 cut(s) 512, 626, 737, 1029, 1052, 1140, 1483, 1662
DpnI GATC 5 cut(s) 194, 543, 698, 1402, 1437
DpnII GATC 5 cut(s) 192, 541, 696, 1400, 1435
DriI GACNNNNNGTC 1 cut(s) 25
Eam1104I CTCTTC 2 cut(s) 1109, 1356
Eam1105I GACNNNNNGTC 1 cut(s) 25
EarI CTCTTC 2 cut(s) 1109, 1356
EciI GGCGGA 1 cut(s) 584
Eco130I CCWWGG 3 cut(s) 846, 899, 978
Eco31I GGTCTC 2 cut(s) 82, 642
Eco32I GATATC 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 1205
EcoO109I RGGNCCY 1 cut(s) 964
EcoRII CCWGG 3 cut(s) 269, 381, 1630
EcoRV GATATC 1 cut(s) 66
EcoT14I CCWWGG 3 cut(s) 846, 899, 978
EcoT22I ATGCAT 1 cut(s) 1641
ErhI CCWWGG 3 cut(s) 846, 899, 978
Esp3I CGTCTC 1 cut(s) 853
FaeI CATG 4 cut(s) 548, 712, 903, 1116
FaqI GGGAC 1 cut(s) 990
FatI CATG 4 cut(s) 544, 708, 899, 1112
FauI CCCGC 1 cut(s) 141
FbaI TGATCA 3 cut(s) 192, 541, 1435
Fnu4HI GCNGC 7 cut(s) 431, 773, 1137, 1281, 1284, 1566, 1599
FokI GGATG 3 cut(s) 725, 1514, 1648
Fsp4HI GCNGC 7 cut(s) 431, 773, 1137, 1281, 1284, 1566, 1599
FspBI CTAG 2 cut(s) 878, 1446
GlaI GCGC 1 cut(s) 941
GluI GCNGC 7 cut(s) 431, 773, 1137, 1281, 1284, 1566, 1599
HaeIII GGCC 3 cut(s) 329, 359, 965
HapII CCGG 1 cut(s) 360
HgaI GACGC 3 cut(s) 265, 992, 1061
HhaI GCGC 1 cut(s) 942
Hin1I GRCGYC 3 cut(s) 257, 1057, 1072
Hin1II CATG 4 cut(s) 548, 712, 903, 1116
Hin6I GCGC 1 cut(s) 940
HinP1I GCGC 1 cut(s) 940
HincII GTYRAC 1 cut(s) 1368
HindII GTYRAC 1 cut(s) 1368
HindIII AAGCTT 1 cut(s) 1409
HinfI GANTC 6 cut(s) 185, 281, 631, 815, 842, 1025
HpaII CCGG 1 cut(s) 360
HphI GGTGA 3 cut(s) 265, 500, 1352
Hpy166II GTNNAC 3 cut(s) 1157, 1368, 1621
Hpy188I TCNGA 7 cut(s) 40, 181, 220, 230, 627, 810, 1377
Hpy188III TCNNGA 1 cut(s) 121
Hpy8I GTNNAC 3 cut(s) 1157, 1368, 1621
Hpy99I CGWCG 1 cut(s) 320
HpyAV CCTTC 5 cut(s) 244, 500, 1062, 1300, 1446
HpyCH4III ACNGT 2 cut(s) 823, 1089
HpyCH4IV ACGT 5 cut(s) 89, 619, 681, 780, 1057
HpyF10VI GCNNNNNNNGC 9 cut(s) 365, 430, 769, 946, 1136, 1277, 1289, 1316, 1598
HpyF3I CTNAG 8 cut(s) 512, 626, 737, 1029, 1052, 1140, 1483, 1662
HpySE526I ACGT 5 cut(s) 89, 619, 681, 780, 1057
Hsp92I GRCGYC 3 cut(s) 257, 1057, 1072
Hsp92II CATG 4 cut(s) 548, 712, 903, 1116
HspAI GCGC 1 cut(s) 940
Ksp22I TGATCA 3 cut(s) 192, 541, 1435
Kzo9I GATC 5 cut(s) 192, 541, 696, 1400, 1435
LmnI GCTCC 3 cut(s) 529, 598, 686
Lsp1109I GCAGC 6 cut(s) 417, 784, 1292, 1295, 1552, 1610
LweI GCATC 4 cut(s) 310, 951, 1492, 1626
MaeI CTAG 2 cut(s) 878, 1446
MaeII ACGT 5 cut(s) 89, 619, 681, 780, 1057
MaeIII GTNAC 3 cut(s) 253, 400, 996
MalI GATC 5 cut(s) 194, 543, 698, 1402, 1437
MboI GATC 5 cut(s) 192, 541, 696, 1400, 1435
MfeI CAATTG 1 cut(s) 1472
MhlI GDGCHC 1 cut(s) 53
MlyI GAGTC 2 cut(s) 809, 1034
MmeI TCCRAC 3 cut(s) 329, 664, 1237
Mph1103I ATGCAT 1 cut(s) 1641
MroXI GAANNNNTTC 1 cut(s) 1103
MseI TTAA 4 cut(s) 800, 1169, 1392, 1464
MslI CAYNNNNRTG 1 cut(s) 618
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 3 cut(s) 271, 383, 1632
MunI CAATTG 1 cut(s) 1472
MvaI CCWGG 3 cut(s) 271, 383, 1632
MwoI GCNNNNNNNGC 9 cut(s) 365, 430, 769, 946, 1136, 1277, 1289, 1316, 1598
NcoI CCATGG 1 cut(s) 899
NdeII GATC 5 cut(s) 192, 541, 696, 1400, 1435
NlaIII CATG 4 cut(s) 548, 712, 903, 1116
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 2 cut(s) 253, 996
NsiI ATGCAT 1 cut(s) 1641
PdmI GAANNNNTTC 1 cut(s) 1103
PfeI GAWTC 4 cut(s) 185, 281, 631, 842
PflMI CCANNNNNTGG 1 cut(s) 1610
PfoI TCCNGGA 1 cut(s) 381
PkrI GCNGC 7 cut(s) 432, 774, 1138, 1282, 1285, 1567, 1600
PleI GAGTC 2 cut(s) 809, 1033
PpsI GAGTC 2 cut(s) 809, 1033
Ppu21I YACGTR 1 cut(s) 620
PsiI TTATAA 1 cut(s) 1514
Psp6I CCWGG 3 cut(s) 269, 381, 1630
PspGI CCWGG 3 cut(s) 269, 381, 1630
PspPI GGNCC 2 cut(s) 357, 964
PstI CTGCAG 2 cut(s) 1234, 1659
RsaI GTAC 2 cut(s) 44, 176
RsaNI GTAC 2 cut(s) 43, 175
RseI CAYNNNNRTG 1 cut(s) 618
SaqAI TTAA 4 cut(s) 800, 1169, 1392, 1464
SatI GCNGC 7 cut(s) 431, 773, 1137, 1281, 1284, 1566, 1599
Sau3AI GATC 5 cut(s) 192, 541, 696, 1400, 1435
Sau96I GGNCC 2 cut(s) 357, 964
ScaI AGTACT 1 cut(s) 44
SchI GAGTC 2 cut(s) 809, 1034
ScrFI CCNGG 3 cut(s) 271, 383, 1632
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 4 cut(s) 310, 951, 1492, 1626
SfcI CTRYAG 4 cut(s) 747, 819, 1230, 1655
SmiMI CAYNNNNRTG 1 cut(s) 618
SmlI CTYRAG 2 cut(s) 46, 434
SmoI CTYRAG 2 cut(s) 46, 434
SsiI CCGC 4 cut(s) 134, 209, 569, 1136
SspMI CTAG 2 cut(s) 878, 1446
StyD4I CCNGG 3 cut(s) 269, 381, 1630
StyI CCWWGG 3 cut(s) 846, 899, 978
TaaI ACNGT 2 cut(s) 823, 1089
TaiI ACGT 5 cut(s) 92, 622, 684, 783, 1060
TaqI TCGA 3 cut(s) 188, 318, 1450
TaqII GACCGA 2 cut(s) 64, 624
TatI WGTACW 1 cut(s) 42
TauI GCSGC 1 cut(s) 1139
TfiI GAWTC 4 cut(s) 185, 281, 631, 842
Tru1I TTAA 4 cut(s) 800, 1169, 1392, 1464
Tru9I TTAA 4 cut(s) 800, 1169, 1392, 1464
TscAI CASTG 1 cut(s) 706
TseFI GTSAC 2 cut(s) 253, 996
TseI GCWGC 6 cut(s) 430, 772, 1280, 1283, 1565, 1598
Tsp45I GTSAC 2 cut(s) 253, 996
TspDTI ATGAA 4 cut(s) 148, 665, 1374, 1533
TspGWI ACGGA 1 cut(s) 611
TspRI CASTG 1 cut(s) 706
Van91I CCANNNNNTGG 1 cut(s) 1610
XapI RAATTY 1 cut(s) 238
XmnI GAANNNNTTC 1 cut(s) 1103
XspI CTAG 2 cut(s) 878, 1446
ZraI GACGTC 1 cut(s) 1058
ZrmI AGTACT 1 cut(s) 44
Zsp2I ATGCAT 1 cut(s) 1641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.