Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

11159887 .. 11160611

Gene Structure 725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0125500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGGCCTCTCGATTTCTGTTGCTAGCATTACTCGTAGTCATGACTTGCTCCATTGCTTTAGCAACTGAGAGTCTTCAAGATTTCTGCGTAGCACAGCCAACACGCTTAGCTGCAGTGAATGGCGTTGTCTGCAAGGACCCTAATCTTGTTGAAGCCAATGACTTCTACTATAGTGGACTTGACATAGCAGGCAACACATCAACTGCATTCGGTTCACGTGTGACCTCTGTTAGGGTGAACCAAATTCCAGGACTCAACACCTTTGGCATCTCCATTGCACGCATCGATTTTGCTGCATGGGGTGTTAACCCTCCCCACACACACCCTCGCGCTGCCGAAATCTTGACAGTCCTTGAAGGCAGCCTCCAAGTTGGTTTTGTCACCTCCAACCCCGATAACCGTCTCATCACAAAAATACTTCAGGCTGGTGATGTGTTTGTGTTCCCGGAAGGTCTTGTGCATTTCCAATACAATGTTGGATATACTACTGCAGTCGCCTTTTCAGCTTTTAGCAGCCAAAACCCAGGAACTGTTACCCTTGCCAACACGGTATTTGGATCAAGACCTCACATCTCTAGTGACATTCTTACAAAGGCTTTCCTAGTGGATAAGCAAGCAATCTACAACATACAGGCAAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

214

Amino Acids

23.02

Weight (kDa)

6.4

Isoelectric Point (pI)

26.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	59 - 205	8e-49	Cupin
Cupin_2	PF07883	101 - 167	4e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	330
AclWI	GGATC	1 cut(s)	565
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	404
AcvI	CACGTG	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	231
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	3 cut(s)	77, 152, 356
AjnI	CCWGG	2 cut(s)	247, 523
AluBI	AGCT	2 cut(s)	110, 506
AluI	AGCT	2 cut(s)	110, 506
Alw26I	GTCTC	1 cut(s)	407
AlwI	GGATC	1 cut(s)	565
AlwNI	CAGNNNCTG	1 cut(s)	530
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	5 cut(s)	110, 293, 332, 360, 513
ApoI	RAATTY	1 cut(s)	243
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	1 cut(s)	136
AsuC2I	CCSGG	1 cut(s)	446
AsuHPI	GGTGA	3 cut(s)	247, 373, 440
AsuNHI	GCTAGC	1 cut(s)	22
AvaII	GGWCC	1 cut(s)	136
BbrPI	CACGTG	1 cut(s)	218
BbsI	GAAGAC	1 cut(s)	65
BbvI	GCAGC	5 cut(s)	97, 280, 319, 372, 525
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciT130I	CCWGG	2 cut(s)	249, 525
BcnI	CCSGG	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	3 cut(s)	23, 576, 602
BfmI	CTRYAG	3 cut(s)	111, 169, 489
BisI	GCNGC	5 cut(s)	111, 294, 333, 361, 514
BlpI	GCTNAGC	1 cut(s)	106
BlsI	GCNGC	5 cut(s)	112, 295, 334, 362, 515
Bme1390I	CCNGG	3 cut(s)	249, 446, 525
Bme18I	GGWCC	1 cut(s)	136
BmgT120I	GGNCC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	3 cut(s)	249, 446, 525
BmsI	GCATC	2 cut(s)	276, 291
BmtI	GCTAGC	1 cut(s)	26
BpiI	GAAGAC	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	446
Bsa29I	ATCGAT	1 cut(s)	285
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	523
Bsc4I	CCNNNNNNNGG	1 cut(s)	231
Bse3DI	GCAATG	2 cut(s)	51, 273
BseBI	CCWGG	2 cut(s)	249, 525
BseCI	ATCGAT	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	523
BseLI	CCNNNNNNNGG	1 cut(s)	231
BseMI	GCAATG	2 cut(s)	51, 273
BseMII	CTCAG	1 cut(s)	57
BseXI	GCAGC	5 cut(s)	97, 280, 319, 372, 525
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	446
BslI	CCNNNNNNNGG	1 cut(s)	231
BsmAI	GTCTC	1 cut(s)	407
BsmBI	CGTCTC	1 cut(s)	407
BsmI	GAATGC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	557
Bsp1720I	GCTNAGC	1 cut(s)	106
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	285
BspFNI	CGCG	1 cut(s)	330
BspHI	TCATGA	1 cut(s)	39
BspLI	GGNNCC	1 cut(s)	138
BspMAI	CTGCAG	2 cut(s)	115, 493
BspOI	GCTAGC	1 cut(s)	26
BspPI	GGATC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	51, 273
BssECI	CCNNGG	1 cut(s)	523
BssMI	GATC	1 cut(s)	557
Bst2UI	CCWGG	2 cut(s)	249, 525
Bst4CI	ACNGT	4 cut(s)	349, 401, 532, 550
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	24, 190, 280, 615
BstDEI	CTNAG	2 cut(s)	66, 106
BstENI	CCTNNNNNAGG	1 cut(s)	229
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	1 cut(s)	560
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	557
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 503
BstNI	CCWGG	2 cut(s)	249, 525
BstSCI	CCNGG	3 cut(s)	247, 444, 523
BstSFI	CTRYAG	3 cut(s)	111, 169, 489
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	5 cut(s)	97, 280, 319, 372, 525
BstV2I	GAAGAC	1 cut(s)	65
Bsu15I	ATCGAT	1 cut(s)	285
BsuRI	GGCC	1 cut(s)	5
BsuTUI	ATCGAT	1 cut(s)	285
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	4 cut(s)	24, 190, 280, 615
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	39
CfoI	GCGC	1 cut(s)	332
Cfr13I	GGNCC	1 cut(s)	136
ClaI	ATCGAT	1 cut(s)	285
CviAII	CATG	2 cut(s)	40, 297
CviJI	RGCY	9 cut(s)	5, 97, 110, 155, 363, 425, 506, 516, 596
CviKI_1	RGCY	9 cut(s)	5, 97, 110, 155, 363, 425, 506, 516, 596
DdeI	CTNAG	2 cut(s)	66, 106
DpnI	GATC	1 cut(s)	559
DpnII	GATC	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	136
Eco57I	CTGAAG	1 cut(s)	404
Eco72I	CACGTG	1 cut(s)	218
EcoNI	CCTNNNNNAGG	1 cut(s)	229
EcoO109I	RGGNCCY	1 cut(s)	136
EcoRII	CCWGG	2 cut(s)	247, 523
Esp3I	CGTCTC	1 cut(s)	407
FaeI	CATG	2 cut(s)	43, 300
FaiI	YATR	6 cut(s)	41, 171, 185, 298, 483, 629
FatI	CATG	2 cut(s)	39, 296
Fnu4HI	GCNGC	5 cut(s)	111, 294, 333, 361, 514
Fsp4HI	GCNGC	5 cut(s)	111, 294, 333, 361, 514
FspBI	CTAG	3 cut(s)	23, 576, 602
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	5 cut(s)	111, 294, 333, 361, 514
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	1 cut(s)	332
Hin1II	CATG	2 cut(s)	43, 300
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	2 cut(s)	70, 252
HpaI	GTTAAC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	247, 373, 440
Hpy166II	GTNNAC	4 cut(s)	176, 215, 238, 307
Hpy188III	TCNNGA	5 cut(s)	9, 40, 77, 343, 561
Hpy8I	GTNNAC	4 cut(s)	176, 215, 238, 307
HpyAV	CCTTC	2 cut(s)	350, 443
HpyCH4III	ACNGT	4 cut(s)	349, 401, 532, 550
HpyCH4IV	ACGT	1 cut(s)	217
HpyCH4V	TGCA	7 cut(s)	113, 132, 206, 278, 296, 460, 491
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 503
HpyF3I	CTNAG	2 cut(s)	66, 106
HpySE526I	ACGT	1 cut(s)	217
Hsp92II	CATG	2 cut(s)	43, 300
HspAI	GCGC	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	307
Kzo9I	GATC	1 cut(s)	557
LmnI	GCTCC	1 cut(s)	53
LpnPI	CCDG	9 cut(s)	174, 234, 261, 407, 411, 459, 510, 537, 617
Lsp1109I	GCAGC	5 cut(s)	97, 280, 319, 372, 525
LweI	GCATC	2 cut(s)	276, 291
MaeI	CTAG	3 cut(s)	23, 576, 602
MaeII	ACGT	1 cut(s)	217
MaeIII	GTNAC	4 cut(s)	220, 379, 532, 578
MalI	GATC	1 cut(s)	559
MboI	GATC	1 cut(s)	557
MboII	GAAGA	1 cut(s)	65
MluCI	AATT	1 cut(s)	243
MlyI	GAGTC	2 cut(s)	79, 246
MmeI	TCCRAC	2 cut(s)	411, 457
MnlI	CCTC	7 cut(s)	16, 235, 321, 336, 374, 394, 576
MseI	TTAA	1 cut(s)	306
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	3 cut(s)	249, 446, 525
Mva1269I	GAATGC	1 cut(s)	206
MvaI	CCWGG	2 cut(s)	249, 525
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	2 cut(s)	129, 503
NciI	CCSGG	1 cut(s)	446
NdeII	GATC	1 cut(s)	557
NheI	GCTAGC	1 cut(s)	22
NlaIII	CATG	2 cut(s)	43, 300
NlaIV	GGNNCC	1 cut(s)	138
NmuCI	GTSAC	3 cut(s)	220, 379, 578
PagI	TCATGA	1 cut(s)	39
PctI	GAATGC	1 cut(s)	206
PfoI	TCCNGGA	2 cut(s)	247, 444
PkrI	GCNGC	5 cut(s)	112, 295, 334, 362, 515
PleI	GAGTC	2 cut(s)	78, 246
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
PpsI	GAGTC	2 cut(s)	78, 246
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	1 cut(s)	136
Psp5II	RGGWCCY	1 cut(s)	136
Psp6I	CCWGG	2 cut(s)	247, 523
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	247, 523
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	136
PspPPI	RGGWCCY	1 cut(s)	136
PstI	CTGCAG	2 cut(s)	115, 493
PstNI	CAGNNNCTG	1 cut(s)	530
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	5 cut(s)	111, 294, 333, 361, 514
Sau3AI	GATC	1 cut(s)	557
Sau96I	GGNCC	1 cut(s)	136
SchI	GAGTC	2 cut(s)	79, 246
ScrFI	CCNGG	3 cut(s)	249, 446, 525
SetI	ASST	9 cut(s)	112, 220, 227, 263, 386, 454, 508, 568, 641
SfaNI	GCATC	2 cut(s)	276, 291
SfcI	CTRYAG	3 cut(s)	111, 169, 489
SinI	GGWCC	1 cut(s)	136
Sse9I	AATT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	23, 576, 602
StyD4I	CCNGG	3 cut(s)	247, 444, 523
TaaI	ACNGT	4 cut(s)	349, 401, 532, 550
TaiI	ACGT	1 cut(s)	220
TaqI	TCGA	2 cut(s)	10, 285
TasI	AATT	1 cut(s)	243
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	3 cut(s)	220, 379, 578
TseI	GCWGC	5 cut(s)	110, 293, 332, 360, 513
Tsp45I	GTSAC	3 cut(s)	220, 379, 578
TspRI	CASTG	1 cut(s)	120
VpaK11BI	GGWCC	1 cut(s)	136
XagI	CCTNNNNNAGG	1 cut(s)	229
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	1 cut(s)	473
XspI	CTAG	3 cut(s)	23, 576, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.