Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

25698842 .. 25702520

Gene Structure 3679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG218200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGCCGTTCTTTCACCTGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCACTGTTTGGTTATGTGGCGGAAACCAATCACTTTCCACAGAACACAGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTCTCCCTCGTTTGCCTCAGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTCCAGTTAATTGGTCAGAATGACTCTACAGTAAGTATTAGCGAAGCAGATTACAAGGAAAGAGAAAGACGAAAGAAAATAGGACTAGCCAACAAAGGAAAAGTGCCATGGAACAAAGGCAGGAAACATAGTGCAGAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATGAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAGGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGCTTGACAGAGAGACTTCCACAAATGATCAAGTTGCTAGTCGAAGGGACATAGTTAAATCGCAATTGCATATCTCAGCTTTGGAGAAATTGGATGCAGAGCTTATAAAGAGAGAAAAATTGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAATGGAACAAGCTATGGCAGCAGCCCCATCTGTTGGGGTAGTAAACGAGAAACCAGGGATGCATACCCATACACTTCTGCAGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

391

Amino Acids

45.07

Weight (kDa)

10.13

Isoelectric Point (pI)

60.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NUMOD3	PF07460	121 - 149	1.2e-06	NUMOD3 motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AccB7I	CCANNNNNTGG	2 cut(s)	62, 1118
AciI	CCGC	2 cut(s)	74, 641
AcuI	CTGAAG	1 cut(s)	710
AcyI	GRCGYC	1 cut(s)	577
AfiI	CCNNNNNNNGG	3 cut(s)	62, 619, 1118
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	39, 112, 830
AjnI	CCWGG	1 cut(s)	1138
AluBI	AGCT	9 cut(s)	194, 687, 724, 797, 916, 992, 1015, 1070, 1097
AluI	AGCT	9 cut(s)	194, 687, 724, 797, 916, 992, 1015, 1070, 1097
Alw26I	GTCTC	4 cut(s)	147, 428, 842, 920
AoxI	GGCC	1 cut(s)	468
ApeKI	GCWGC	7 cut(s)	277, 734, 785, 788, 1070, 1103, 1106
Asp700I	GAANNNNTTC	1 cut(s)	608
AspLEI	GCGC	1 cut(s)	447
AspS9I	GGNCC	2 cut(s)	298, 469
AsuHPI	GGTGA	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	298
BauI	CACGAG	2 cut(s)	270, 792
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	7 cut(s)	289, 721, 797, 800, 1057, 1115, 1118
BccI	CCATC	1 cut(s)	1120
BceAI	ACGGC	1 cut(s)	578
BciT130I	CCWGG	1 cut(s)	1140
BclI	TGATCA	2 cut(s)	46, 940
BcoDI	GTCTC	4 cut(s)	147, 428, 842, 920
BfaI	CTAG	2 cut(s)	383, 951
BfmI	CTRYAG	4 cut(s)	252, 324, 735, 1163
BisI	GCNGC	8 cut(s)	278, 642, 735, 786, 789, 1071, 1104, 1107
BlsI	GCNGC	8 cut(s)	279, 643, 736, 787, 790, 1072, 1105, 1108
Bme1390I	CCNGG	1 cut(s)	1140
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	2 cut(s)	298, 469
BmrFI	CCNGG	1 cut(s)	1140
BmsI	GCATC	3 cut(s)	456, 997, 1134
Bpu10I	CCTNAGC	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	577
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	5 cut(s)	404, 483, 534, 777, 1139
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 619, 1118
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	1140
BseDI	CCNNGG	5 cut(s)	404, 483, 534, 777, 1139
BseGI	GGATG	3 cut(s)	223, 1012, 1149
BseLI	CCNNNNNNNGG	3 cut(s)	62, 619, 1118
BseMII	CTCAG	5 cut(s)	8, 122, 171, 256, 1002
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	7 cut(s)	289, 721, 797, 800, 1057, 1115, 1118
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	470
BslFI	GGGAC	3 cut(s)	487, 495, 974
BslI	CCNNNNNNNGG	3 cut(s)	62, 619, 1118
BsmAI	GTCTC	4 cut(s)	147, 428, 842, 920
BsmFI	GGGAC	3 cut(s)	487, 495, 974
BsnI	GGCC	1 cut(s)	470
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	46, 201, 905, 940
Bsp19I	CCATGG	1 cut(s)	404
BspACI	CCGC	2 cut(s)	74, 641
BspANI	GGCC	1 cut(s)	470
BspCNI	CTCAG	5 cut(s)	9, 123, 170, 255, 1001
BspMAI	CTGCAG	2 cut(s)	739, 1167
BspTNI	GGTCTC	1 cut(s)	147
BsrI	ACTGG	1 cut(s)	301
BssECI	CCNNGG	5 cut(s)	404, 483, 534, 777, 1139
BssMI	GATC	4 cut(s)	46, 201, 905, 940
BssNI	GRCGYC	1 cut(s)	577
BssSI	CACGAG	2 cut(s)	270, 792
BssT1I	CCWWGG	4 cut(s)	404, 483, 534, 777
Bst2BI	CACGAG	2 cut(s)	270, 792
Bst2UI	CCWGG	1 cut(s)	1140
Bst4CI	ACNGT	3 cut(s)	60, 328, 594
Bst6I	CTCTTC	2 cut(s)	614, 861
BstACI	GRCGYC	1 cut(s)	577
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	732, 822, 1038
BstDEI	CTNAG	8 cut(s)	17, 131, 157, 242, 557, 645, 988, 1170
BstDSI	CCRYGG	1 cut(s)	404
BstF5I	GGATG	3 cut(s)	223, 1012, 1149
BstHHI	GCGC	1 cut(s)	447
BstKTI	GATC	4 cut(s)	49, 204, 908, 943
BstMAI	GTCTC	4 cut(s)	147, 428, 842, 920
BstMBI	GATC	4 cut(s)	46, 201, 905, 940
BstMWI	GCNNNNNNNGC	7 cut(s)	274, 451, 641, 782, 794, 821, 1103
BstNI	CCWGG	1 cut(s)	1140
BstSCI	CCNGG	1 cut(s)	1138
BstSFI	CTRYAG	4 cut(s)	252, 324, 735, 1163
BstV1I	GCAGC	7 cut(s)	289, 721, 797, 800, 1057, 1115, 1118
BstXI	CCANNNNNNTGG	1 cut(s)	308
BsuRI	GGCC	1 cut(s)	470
BtgI	CCRYGG	1 cut(s)	404
BtsCI	GGATG	3 cut(s)	223, 1012, 1149
BtsIMutI	CAGTG	2 cut(s)	56, 211
Cac8I	GCNNGC	3 cut(s)	732, 822, 1038
CfoI	GCGC	1 cut(s)	447
Cfr13I	GGNCC	2 cut(s)	298, 469
CseI	GACGC	2 cut(s)	497, 566
CviAII	CATG	4 cut(s)	50, 214, 405, 618
DdeI	CTNAG	8 cut(s)	17, 131, 157, 242, 557, 645, 988, 1170
DpnI	GATC	4 cut(s)	48, 203, 907, 942
DpnII	GATC	4 cut(s)	46, 201, 905, 940
Eam1104I	CTCTTC	2 cut(s)	614, 861
EarI	CTCTTC	2 cut(s)	614, 861
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	4 cut(s)	404, 483, 534, 777
Eco31I	GGTCTC	1 cut(s)	147
Eco47I	GGWCC	1 cut(s)	298
Eco57I	CTGAAG	1 cut(s)	710
EcoO109I	RGGNCCY	1 cut(s)	469
EcoRII	CCWGG	1 cut(s)	1138
EcoT14I	CCWWGG	4 cut(s)	404, 483, 534, 777
EcoT22I	ATGCAT	1 cut(s)	1149
ErhI	CCWWGG	4 cut(s)	404, 483, 534, 777
FaeI	CATG	4 cut(s)	53, 217, 408, 621
FaqI	GGGAC	3 cut(s)	487, 495, 974
FatI	CATG	4 cut(s)	49, 213, 404, 617
FbaI	TGATCA	2 cut(s)	46, 940
Fnu4HI	GCNGC	8 cut(s)	278, 642, 735, 786, 789, 1071, 1104, 1107
FokI	GGATG	3 cut(s)	230, 1019, 1156
Fsp4HI	GCNGC	8 cut(s)	278, 642, 735, 786, 789, 1071, 1104, 1107
FspBI	CTAG	2 cut(s)	383, 951
GlaI	GCGC	1 cut(s)	446
GluI	GCNGC	8 cut(s)	278, 642, 735, 786, 789, 1071, 1104, 1107
GsaI	CCCAGC	1 cut(s)	508
HaeIII	GGCC	1 cut(s)	470
HgaI	GACGC	2 cut(s)	497, 566
HhaI	GCGC	1 cut(s)	447
Hin1I	GRCGYC	1 cut(s)	577
Hin1II	CATG	4 cut(s)	53, 217, 408, 621
Hin6I	GCGC	1 cut(s)	445
HinP1I	GCGC	1 cut(s)	445
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HindIII	AAGCTT	1 cut(s)	914
HinfI	GANTC	3 cut(s)	136, 320, 530
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	662, 873, 1129
Hpy188I	TCNGA	3 cut(s)	132, 315, 882
Hpy8I	GTNNAC	3 cut(s)	662, 873, 1129
HpyAV	CCTTC	3 cut(s)	567, 805, 951
HpyCH4III	ACNGT	3 cut(s)	60, 328, 594
HpyCH4IV	ACGT	2 cut(s)	124, 285
HpyCH4V	TGCA	8 cut(s)	199, 431, 737, 982, 1010, 1055, 1147, 1165
HpyF10VI	GCNNNNNNNGC	7 cut(s)	274, 451, 641, 782, 794, 821, 1103
HpyF3I	CTNAG	8 cut(s)	17, 131, 157, 242, 557, 645, 988, 1170
HpySE526I	ACGT	2 cut(s)	124, 285
Hsp92I	GRCGYC	1 cut(s)	577
Hsp92II	CATG	4 cut(s)	53, 217, 408, 621
HspAI	GCGC	1 cut(s)	445
Ksp22I	TGATCA	2 cut(s)	46, 940
Kzo9I	GATC	4 cut(s)	46, 201, 905, 940
LmnI	GCTCC	2 cut(s)	34, 191
Lsp1109I	GCAGC	7 cut(s)	289, 721, 797, 800, 1057, 1115, 1118
LweI	GCATC	3 cut(s)	456, 997, 1134
MaeI	CTAG	2 cut(s)	383, 951
MaeII	ACGT	2 cut(s)	124, 285
MalI	GATC	4 cut(s)	48, 203, 907, 942
MboI	GATC	4 cut(s)	46, 201, 905, 940
MboII	GAAGA	5 cut(s)	508, 543, 601, 716, 878
MfeI	CAATTG	1 cut(s)	977
MluCI	AATT	7 cut(s)	112, 306, 676, 707, 977, 1001, 1031
MlyI	GAGTC	2 cut(s)	314, 539
MmeI	TCCRAC	1 cut(s)	742
MnlI	CCTC	8 cut(s)	126, 157, 166, 183, 251, 289, 460, 631
Mph1103I	ATGCAT	1 cut(s)	1149
MroXI	GAANNNNTTC	1 cut(s)	608
MseI	TTAA	4 cut(s)	305, 674, 897, 969
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	1140
MunI	CAATTG	1 cut(s)	977
MvaI	CCWGG	1 cut(s)	1140
MwoI	GCNNNNNNNGC	7 cut(s)	274, 451, 641, 782, 794, 821, 1103
NcoI	CCATGG	1 cut(s)	404
NdeII	GATC	4 cut(s)	46, 201, 905, 940
NlaIII	CATG	4 cut(s)	53, 217, 408, 621
NsiI	ATGCAT	1 cut(s)	1149
PdmI	GAANNNNTTC	1 cut(s)	608
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	2 cut(s)	62, 1118
PkrI	GCNGC	8 cut(s)	279, 643, 736, 787, 790, 1072, 1105, 1108
PleI	GAGTC	2 cut(s)	314, 538
PpsI	GAGTC	2 cut(s)	314, 538
Ppu21I	YACGTR	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	1019
Psp6I	CCWGG	1 cut(s)	1138
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	1138
PspPI	GGNCC	2 cut(s)	298, 469
PstI	CTGCAG	2 cut(s)	739, 1167
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	4 cut(s)	305, 674, 897, 969
SatI	GCNGC	8 cut(s)	278, 642, 735, 786, 789, 1071, 1104, 1107
Sau3AI	GATC	4 cut(s)	46, 201, 905, 940
Sau96I	GGNCC	2 cut(s)	298, 469
SchI	GAGTC	2 cut(s)	314, 539
ScrFI	CCNGG	1 cut(s)	1140
SfaNI	GCATC	3 cut(s)	456, 997, 1134
SfcI	CTRYAG	4 cut(s)	252, 324, 735, 1163
SinI	GGWCC	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	7 cut(s)	112, 306, 676, 707, 977, 1001, 1031
SsiI	CCGC	2 cut(s)	74, 641
SspMI	CTAG	2 cut(s)	383, 951
StyD4I	CCNGG	1 cut(s)	1138
StyI	CCWWGG	4 cut(s)	404, 483, 534, 777
TaaI	ACNGT	3 cut(s)	60, 328, 594
TaiI	ACGT	2 cut(s)	127, 288
TaqI	TCGA	1 cut(s)	955
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	7 cut(s)	112, 306, 676, 707, 977, 1001, 1031
TauI	GCSGC	1 cut(s)	644
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	4 cut(s)	305, 674, 897, 969
Tru9I	TTAA	4 cut(s)	305, 674, 897, 969
TscAI	CASTG	2 cut(s)	63, 211
TseI	GCWGC	7 cut(s)	277, 734, 785, 788, 1070, 1103, 1106
TspDTI	ATGAA	3 cut(s)	170, 879, 1038
TspRI	CASTG	2 cut(s)	63, 211
Van91I	CCANNNNNTGG	2 cut(s)	62, 1118
VpaK11BI	GGWCC	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	608
XspI	CTAG	2 cut(s)	383, 951
Zsp2I	ATGCAT	1 cut(s)	1149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.