Rorug05G0125600

NUMOD3 motif (2 copies)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002997
Physical Location & Seq
Reverse (-)
11161580 .. 11162364
785 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0125600.1

Sequence Viewer

Length: 648 bp
ATGGCCTCGCAGTTTCTATTGTTAGCATGCCTTGCTATGACAGCTTCTATTGCTTTGGCATCTGACCCAAGTTCTCTTCAGGATTTTTGTGTGGCTGATCCATCAAGCTCAGTACCCGTGAATGGACATGTGTGCAAGGACCCCAAGCTAGTTGTCGCCGATGACTTCTTCTTCAGTGGACTTCACCTTGCAGGCAACACATCAAACCCTGCTGGTTCAAAGGTGACCCCTGCTAATGTTGCCCAGATTCCAGGACTTAATACTTTTGGTATCTCCCTAGTTCGTATCGACTATGCACCATGGGGTATCAATGCTCCACACACTCATCCTAGAGCTACTGAAATCTTGACAGTCCTTGAAGGGAGCCTCCAAGTGGGTTTTGTCACCTCCAATCCCGAAAACAGACTTATCACAAAGGTGCTTCAGAAGGGCGATGTGTTTGTGTTCCCAGTAGGACTTGTGCATTTCCAACACAATGTGGGAAATATTAATGCGGTAGCCATTGCAGCTCTGAGCAGCCAAAATCCAGGTGCTATTACCATTGCCAATGCAGTGTTTGGATCAAAGCCTGCCATTTCTGCTGATGTTCTTGCAAAGGCATTCCAAGTCGACAAGGACACAATCTATGATTTCCAGTCCAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NUMOD3

Protein Analysis

215

Amino Acids

22.59

Weight (kDa)

6.01

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 61 - 207 1.4e-51 Cupin
Cupin_2 PF07883 96 - 168 1e-07 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AciI CCGC 1 cut(s) 494
AclWI GGATC 2 cut(s) 92, 568
AcuI CTGAAG 3 cut(s) 62, 157, 407
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 2 cut(s) 122, 373
AflIII ACRYGT 1 cut(s) 127
AgsI TTSAA 2 cut(s) 219, 359
AjnI CCWGG 2 cut(s) 250, 526
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 5 cut(s) 44, 108, 148, 335, 509
AluI AGCT 5 cut(s) 44, 108, 148, 335, 509
AlwI GGATC 2 cut(s) 92, 568
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 506, 516
AseI ATTAAT 1 cut(s) 489
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 3 cut(s) 176, 235, 376
AvaII GGWCC 1 cut(s) 139
BbvI GCAGC 2 cut(s) 518, 528
BccI CCATC 1 cut(s) 109
BciT130I CCWGG 2 cut(s) 252, 528
BfaI CTAG 4 cut(s) 149, 278, 330, 646
BisI GCNGC 2 cut(s) 507, 517
BlsI GCNGC 2 cut(s) 508, 518
Bme1390I CCNGG 2 cut(s) 252, 528
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 365
BmrFI CCNGG 2 cut(s) 252, 528
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 122, 373
Bse1I ACTGG 2 cut(s) 449, 634
Bse3DI GCAATG 2 cut(s) 501, 540
BseBI CCWGG 2 cut(s) 252, 528
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 2 cut(s) 122, 373
BseMI GCAATG 2 cut(s) 501, 540
BseMII CTCAG 2 cut(s) 123, 503
BseNI ACTGG 2 cut(s) 449, 634
BseXI GCAGC 2 cut(s) 518, 528
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 122, 373
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 2 cut(s) 97, 560
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 122, 504
BspLI GGNNCC 2 cut(s) 141, 365
BspPI GGATC 2 cut(s) 92, 568
BsrDI GCAATG 2 cut(s) 501, 540
BsrI ACTGG 2 cut(s) 449, 634
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 97, 560
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 252, 528
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 3 cut(s) 28, 193, 570
BstDEI CTNAG 2 cut(s) 109, 512
BstDSI CCRYGG 1 cut(s) 299
BstEII GGTNACC 1 cut(s) 223
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 100, 563
BstMBI GATC 2 cut(s) 97, 560
BstMWI GCNNNNNNNGC 6 cut(s) 32, 41, 50, 239, 506, 578
BstNI CCWGG 2 cut(s) 252, 528
BstNSI RCATGY 2 cut(s) 30, 131
BstPI GGTNACC 1 cut(s) 223
BstSCI CCNGG 2 cut(s) 250, 526
BstV1I GCAGC 2 cut(s) 518, 528
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 2 cut(s) 181, 558
Cac8I GCNNGC 3 cut(s) 28, 193, 570
Cfr13I GGNCC 1 cut(s) 139
Csp6I GTAC 1 cut(s) 113
CviAII CATG 3 cut(s) 27, 128, 300
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 109, 512
DpnI GATC 2 cut(s) 99, 562
DpnII GATC 2 cut(s) 97, 560
DraIII CACNNNGTG 1 cut(s) 478
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 3 cut(s) 62, 157, 407
Eco91I GGTNACC 1 cut(s) 223
EcoO109I RGGNCCY 1 cut(s) 139
EcoO65I GGTNACC 1 cut(s) 223
EcoRII CCWGG 2 cut(s) 250, 526
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 3 cut(s) 30, 131, 303
FaiI YATR 6 cut(s) 28, 38, 129, 294, 301, 627
FatI CATG 3 cut(s) 26, 127, 299
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 507, 517
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 507, 517
FspBI CTAG 4 cut(s) 149, 278, 330, 646
GluI GCNGC 2 cut(s) 507, 517
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 3 cut(s) 30, 131, 303
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 1 cut(s) 247
HphI GGTGA 3 cut(s) 176, 235, 376
Hpy166II GTNNAC 2 cut(s) 179, 610
Hpy188I TCNGA 3 cut(s) 64, 426, 513
Hpy188III TCNNGA 3 cut(s) 80, 346, 395
Hpy8I GTNNAC 2 cut(s) 179, 610
HpyAV CCTTC 2 cut(s) 353, 421
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4V TGCA 7 cut(s) 135, 191, 296, 463, 506, 551, 593
HpyF10VI GCNNNNNNNGC 6 cut(s) 32, 41, 50, 239, 506, 578
HpyF3I CTNAG 2 cut(s) 109, 512
Hsp92II CATG 3 cut(s) 30, 131, 303
Kzo9I GATC 2 cut(s) 97, 560
LmnI GCTCC 2 cut(s) 319, 363
Lsp1109I GCAGC 2 cut(s) 518, 528
LweI GCATC 1 cut(s) 68
MaeI CTAG 4 cut(s) 149, 278, 330, 646
MaeIII GTNAC 2 cut(s) 223, 382
MalI GATC 2 cut(s) 99, 562
MboI GATC 2 cut(s) 97, 560
MboII GAAGA 3 cut(s) 68, 160, 163
MmeI TCCRAC 1 cut(s) 493
MnlI CCTC 3 cut(s) 16, 377, 397
MseI TTAA 2 cut(s) 258, 489
MslI CAYNNNNRTG 1 cut(s) 416
MspR9I CCNGG 2 cut(s) 252, 528
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 252, 528
MwoI GCNNNNNNNGC 6 cut(s) 32, 41, 50, 239, 506, 578
NcoI CCATGG 1 cut(s) 299
NdeII GATC 2 cut(s) 97, 560
NlaIII CATG 3 cut(s) 30, 131, 303
NlaIV GGNNCC 2 cut(s) 141, 365
NmuCI GTSAC 2 cut(s) 223, 382
NspI RCATGY 2 cut(s) 30, 131
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 1 cut(s) 30
PciI ACATGT 1 cut(s) 127
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 508, 518
PpuMI RGGWCCY 1 cut(s) 139
PscI ACATGT 1 cut(s) 127
PshBI ATTAAT 1 cut(s) 489
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 250, 526
PspEI GGTNACC 1 cut(s) 223
PspGI CCWGG 2 cut(s) 250, 526
PspN4I GGNNCC 2 cut(s) 141, 365
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 258, 489
SatI GCNGC 2 cut(s) 507, 517
Sau3AI GATC 2 cut(s) 97, 560
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 2 cut(s) 252, 528
SfaNI GCATC 1 cut(s) 68
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 416
SphI GCATGC 1 cut(s) 30
SsiI CCGC 1 cut(s) 494
SspI AATATT 1 cut(s) 487
SspMI CTAG 4 cut(s) 149, 278, 330, 646
StyD4I CCNGG 2 cut(s) 250, 526
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 352
TaqI TCGA 2 cut(s) 288, 609
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 258, 489
Tru9I TTAA 2 cut(s) 258, 489
TscAI CASTG 2 cut(s) 181, 558
TseFI GTSAC 2 cut(s) 223, 382
TseI GCWGC 2 cut(s) 506, 516
Tsp45I GTSAC 2 cut(s) 223, 382
TspRI CASTG 2 cut(s) 181, 558
VpaK11BI GGWCC 1 cut(s) 139
VspI ATTAAT 1 cut(s) 489
XceI RCATGY 2 cut(s) 30, 131
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 4 cut(s) 149, 278, 330, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.