Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

10036656 .. 10041665

Gene Structure 5010 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G170000.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGCCGTTCTTTCACCTGAGATTGACTGCTTCACACTCAACTCTCAATCACTTTCCGCTGTTTGGTTATGTGGTGGAACCCACTCACTTCCCACAGAACACACAGCATTTGAATTATCATTTACCTGTTTTGAAGAATTGGCCTCCCTTGTATGCTTTTGTTCATTCATTCCCTAGATTTCATTCTTTGGGAGCCATGCACGTCAGTGCTGACATGGCTGAGAAATTTGATATTCTCAATGTCTGCCATTCTATACTTGGCATGAATTCATATGAGAAGCAAAGCTCGATCAGGGAGGTTCAATCAATGCATCATACTGACTCTCCAGACAGTATTAGCAAGGAAGAGAAGGAAAGACAGAGACGAAAAAAAATAGGACTAGCCAACAAAGGGAGAGTACCATGGAACAAAGGCAGGAAACATAGTTCGGAGACTTGTGCGCGAATCAAACAGAGAACAACAGAAGCCTTAAAAGACCCCAAGGTTAGAAAGAAGATGTCTGAGCATCCCCGGCCTCATAGCGCGGAGTCCAAGGCAAAAATGCGTTCTTCACTTAGACGTGTTTGGGGACAGCGTTTAAAATGGAAACGGTTAAGGGAGAAATTATTTCTGTCATGGGTTGAAAGCATAGCAGAGGCAGCTAAGAAAGGTGGTAGAGGACAGCAAGAGCTGTGTTGGGATAGCTATGAGAAGATAAAGCAAAAATTACATCTCCAAGAGCTTCAGCTGGCTGCTGAAAAGAAAAAGGAAAAGGCGAAGGAGAGGACAAAGCAAAGAGCAACGACAGCAGAACAAGTTAAAGAAAAAAATATGGCAAGGATTGCTTGTGAGAGGAGAAAAGATGGAGAAGTCTATGAAGATACTGAAGAGTTGACAGTTCTTCAAGGGCGGAATTGTAAGCAGAGATTAATGAAGTTGGAAAGAAAAACTTCAACAAATGGACAAGTTGCTGCTCGAGGGGACATAGTCATGTCGCATATCTCAGCTTTTGAGAAACTGGATCTAGAGCTTATGAAGAGAGAAAAAATGCAGAAAGAATTTTCATTTGCAGACCAGATCAAAGCTGCCAAAAACAAAAGAATGGAATTAACTATGGAAGCCTTATCCTCTGTTCATGCAGCCAACAAGAAACCAGGGGAGTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

383

Amino Acids

44.45

Weight (kDa)

9.93

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	442, 524
AciI	CCGC	3 cut(s)	56, 524, 889
AclWI	GGATC	1 cut(s)	1008
AcsI	RAATTY	3 cut(s)	224, 265, 1037
AcuI	CTGAAG	2 cut(s)	707, 885
AfaI	GTAC	1 cut(s)	399
AfiI	CCNNNNNNNGG	2 cut(s)	62, 390
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	6 cut(s)	112, 133, 302, 623, 884, 933
AjiI	CACGTC	2 cut(s)	202, 560
AjnI	CCWGG	1 cut(s)	1132
AleI	CACNNNNGTG	1 cut(s)	204
AloI	GAACNNNNNNTCC	2 cut(s)	409, 441
AluBI	AGCT	9 cut(s)	285, 641, 670, 684, 721, 727, 986, 1009, 1064
AluI	AGCT	9 cut(s)	285, 641, 670, 684, 721, 727, 986, 1009, 1064
Alw26I	GTCTC	2 cut(s)	355, 425
AlwI	GGATC	1 cut(s)	1008
Ama87I	CYCGRG	1 cut(s)	954
AoxI	GGCC	2 cut(s)	140, 512
ApeKI	GCWGC	5 cut(s)	638, 731, 950, 1064, 1118
ApoI	RAATTY	3 cut(s)	224, 265, 1037
AseI	ATTAAT	1 cut(s)	908
Asp700I	GAANNNNTTC	1 cut(s)	928
AspLEI	GCGC	2 cut(s)	442, 524
AsuC2I	CCSGG	1 cut(s)	511
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	1 cut(s)	954
BbvI	GCAGC	5 cut(s)	650, 718, 937, 1051, 1130
BccI	CCATC	1 cut(s)	836
BciT130I	CCWGG	1 cut(s)	1134
BcnI	CCSGG	1 cut(s)	511
BcoDI	GTCTC	2 cut(s)	355, 425
BfaI	CTAG	3 cut(s)	174, 380, 1004
BisI	GCNGC	5 cut(s)	639, 732, 951, 1065, 1119
BlsI	GCNGC	5 cut(s)	640, 733, 952, 1066, 1120
Bme1390I	CCNGG	2 cut(s)	511, 1134
BmeT110I	CYCGRG	1 cut(s)	954
BmgBI	CACGTC	2 cut(s)	202, 560
BmiI	GGNNCC	2 cut(s)	78, 193
BmrFI	CCNGG	2 cut(s)	511, 1134
BmsI	GCATC	2 cut(s)	319, 514
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	511
BsaJI	CCNNGG	5 cut(s)	401, 480, 509, 531, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	307, 337
Bsc4I	CCNNNNNNNGG	2 cut(s)	62, 390
Bse1I	ACTGG	1 cut(s)	1002
BseBI	CCWGG	1 cut(s)	1134
BseDI	CCNNGG	5 cut(s)	401, 480, 509, 531, 1133
BseGI	GGATG	1 cut(s)	505
BseLI	CCNNNNNNNGG	2 cut(s)	62, 390
BseMII	CTCAG	4 cut(s)	8, 210, 492, 996
BseNI	ACTGG	1 cut(s)	1002
BseRI	GAGGAG	1 cut(s)	847
BseXI	GCAGC	5 cut(s)	650, 718, 937, 1051, 1130
Bsh1236I	CGCG	2 cut(s)	442, 524
BshFI	GGCC	2 cut(s)	142, 514
BsiHKCI	CYCGRG	1 cut(s)	954
BsiSI	CCGG	1 cut(s)	511
BslFI	GGGAC	2 cut(s)	582, 974
BslI	CCNNNNNNNGG	2 cut(s)	62, 390
BsmAI	GTCTC	2 cut(s)	355, 425
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	2 cut(s)	582, 974
BsnI	GGCC	2 cut(s)	142, 514
BsoBI	CYCGRG	1 cut(s)	954
Bsp143I	GATC	3 cut(s)	288, 1000, 1056
Bsp19I	CCATGG	1 cut(s)	401
BspACI	CCGC	3 cut(s)	56, 524, 889
BspANI	GGCC	2 cut(s)	142, 514
BspCNI	CTCAG	4 cut(s)	9, 211, 493, 995
BspFNI	CGCG	2 cut(s)	442, 524
BspLI	GGNNCC	2 cut(s)	78, 193
BspPI	GGATC	1 cut(s)	1008
BsrI	ACTGG	1 cut(s)	1002
BssECI	CCNNGG	5 cut(s)	401, 480, 509, 531, 1133
BssMI	GATC	3 cut(s)	288, 1000, 1056
BssT1I	CCWWGG	3 cut(s)	401, 480, 531
Bst2UI	CCWGG	1 cut(s)	1134
Bst4CI	ACNGT	3 cut(s)	332, 591, 877
Bst6I	CTCTTC	3 cut(s)	339, 861, 1010
BstAPI	GCANNNNNTGC	1 cut(s)	821
BstC8I	GCNNGC	1 cut(s)	729
BstDEI	CTNAG	6 cut(s)	17, 219, 501, 554, 642, 982
BstDSI	CCRYGG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	505
BstFNI	CGCG	2 cut(s)	442, 524
BstHHI	GCGC	2 cut(s)	442, 524
BstKTI	GATC	3 cut(s)	291, 1003, 1059
BstMAI	GTCTC	2 cut(s)	355, 425
BstMBI	GATC	3 cut(s)	288, 1000, 1056
BstMWI	GCNNNNNNNGC	5 cut(s)	215, 511, 638, 785, 821
BstNI	CCWGG	1 cut(s)	1134
BstSCI	CCNGG	2 cut(s)	509, 1132
BstUI	CGCG	2 cut(s)	442, 524
BstV1I	GCAGC	5 cut(s)	650, 718, 937, 1051, 1130
BstX2I	RGATCY	1 cut(s)	1000
BstYI	RGATCY	1 cut(s)	1000
BsuRI	GGCC	2 cut(s)	142, 514
BtgI	CCRYGG	1 cut(s)	401
BtrI	CACGTC	2 cut(s)	202, 560
BtsCI	GGATG	1 cut(s)	505
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	1 cut(s)	729
CfoI	GCGC	2 cut(s)	442, 524
Csp6I	GTAC	1 cut(s)	398
CviAII	CATG	7 cut(s)	196, 214, 262, 402, 615, 970, 1115
CviQI	GTAC	1 cut(s)	398
DdeI	CTNAG	6 cut(s)	17, 219, 501, 554, 642, 982
DpnI	GATC	3 cut(s)	290, 1002, 1058
DpnII	GATC	3 cut(s)	288, 1000, 1056
DraI	TTTAAA	1 cut(s)	579
Eam1104I	CTCTTC	3 cut(s)	339, 861, 1010
EarI	CTCTTC	3 cut(s)	339, 861, 1010
EciI	GGCGGA	1 cut(s)	904
Eco130I	CCWWGG	3 cut(s)	401, 480, 531
Eco57I	CTGAAG	2 cut(s)	707, 885
Eco88I	CYCGRG	1 cut(s)	954
EcoRI	GAATTC	1 cut(s)	265
EcoRII	CCWGG	1 cut(s)	1132
EcoT14I	CCWWGG	3 cut(s)	401, 480, 531
EcoT22I	ATGCAT	1 cut(s)	312
ErhI	CCWWGG	3 cut(s)	401, 480, 531
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	7 cut(s)	199, 217, 265, 405, 618, 973, 1118
FalI	AAGNNNNNCTT	4 cut(s)	808, 840, 913, 945
FaqI	GGGAC	2 cut(s)	582, 974
FatI	CATG	7 cut(s)	195, 213, 261, 401, 614, 969, 1114
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	5 cut(s)	639, 732, 951, 1065, 1119
FokI	GGATG	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	639, 732, 951, 1065, 1119
FspBI	CTAG	3 cut(s)	174, 380, 1004
GlaI	GCGC	2 cut(s)	441, 523
GluI	GCNGC	5 cut(s)	639, 732, 951, 1065, 1119
GsuI	CTGGAG	1 cut(s)	309
HaeIII	GGCC	2 cut(s)	142, 514
HapII	CCGG	1 cut(s)	511
HhaI	GCGC	2 cut(s)	442, 524
Hin1II	CATG	7 cut(s)	199, 217, 265, 405, 618, 973, 1118
Hin6I	GCGC	2 cut(s)	440, 522
HinP1I	GCGC	2 cut(s)	440, 522
HincII	GTYRAC	1 cut(s)	873
HindII	GTYRAC	1 cut(s)	873
HinfI	GANTC	3 cut(s)	320, 444, 527
HpaII	CCGG	1 cut(s)	511
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	1 cut(s)	873
Hpy188I	TCNGA	2 cut(s)	430, 502
Hpy188III	TCNNGA	2 cut(s)	326, 1004
Hpy8I	GTNNAC	1 cut(s)	873
HpyAV	CCTTC	2 cut(s)	343, 751
HpyCH4III	ACNGT	3 cut(s)	332, 591, 877
HpyCH4IV	ACGT	2 cut(s)	201, 559
HpyCH4V	TGCA	5 cut(s)	199, 310, 1030, 1049, 1118
HpyF10VI	GCNNNNNNNGC	5 cut(s)	215, 511, 638, 785, 821
HpyF3I	CTNAG	6 cut(s)	17, 219, 501, 554, 642, 982
HpySE526I	ACGT	2 cut(s)	201, 559
Hsp92II	CATG	7 cut(s)	199, 217, 265, 405, 618, 973, 1118
HspAI	GCGC	2 cut(s)	440, 522
Kzo9I	GATC	3 cut(s)	288, 1000, 1056
LmnI	GCTCC	1 cut(s)	191
Lsp1109I	GCAGC	5 cut(s)	650, 718, 937, 1051, 1130
LweI	GCATC	2 cut(s)	319, 514
MaeI	CTAG	3 cut(s)	174, 380, 1004
MaeII	ACGT	2 cut(s)	201, 559
MalI	GATC	3 cut(s)	290, 1002, 1058
MboI	GATC	3 cut(s)	288, 1000, 1056
MboII	GAAGA	9 cut(s)	145, 356, 505, 540, 703, 869, 872, 878, 1027
MflI	RGATCY	1 cut(s)	1000
MluCI	AATT	9 cut(s)	112, 136, 224, 265, 602, 704, 892, 1037, 1085
MlyI	GAGTC	2 cut(s)	314, 536
MmeI	TCCRAC	1 cut(s)	897
MnlI	CCTC	9 cut(s)	153, 289, 525, 628, 650, 756, 825, 950, 1117
Mph1103I	ATGCAT	1 cut(s)	312
MroXI	GAANNNNTTC	1 cut(s)	928
MseI	TTAA	7 cut(s)	470, 578, 593, 798, 908, 1088, 1147
MslI	CAYNNNNRTG	2 cut(s)	204, 968
MspA1I	CMGCKG	2 cut(s)	58, 727
MspI	CCGG	1 cut(s)	511
MspR9I	CCNGG	2 cut(s)	511, 1134
MvaI	CCWGG	1 cut(s)	1134
MvnI	CGCG	2 cut(s)	442, 524
MwoI	GCNNNNNNNGC	5 cut(s)	215, 511, 638, 785, 821
NciI	CCSGG	1 cut(s)	511
NcoI	CCATGG	1 cut(s)	401
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	3 cut(s)	288, 1000, 1056
NlaIII	CATG	7 cut(s)	199, 217, 265, 405, 618, 973, 1118
NlaIV	GGNNCC	2 cut(s)	78, 193
NsiI	ATGCAT	1 cut(s)	312
OliI	CACNNNNGTG	1 cut(s)	204
PaeR7I	CTCGAG	1 cut(s)	954
PdmI	GAANNNNTTC	1 cut(s)	928
PfeI	GAWTC	1 cut(s)	444
PflFI	GACNNNGTC	1 cut(s)	965
PkrI	GCNGC	5 cut(s)	640, 733, 952, 1066, 1120
PleI	GAGTC	2 cut(s)	314, 535
PpsI	GAGTC	2 cut(s)	314, 535
PshBI	ATTAAT	1 cut(s)	908
Psp6I	CCWGG	1 cut(s)	1132
PspGI	CCWGG	1 cut(s)	1132
PspN4I	GGNNCC	2 cut(s)	78, 193
PspXI	VCTCGAGB	1 cut(s)	954
PsuI	RGATCY	1 cut(s)	1000
PsyI	GACNNNGTC	1 cut(s)	965
PvuII	CAGCTG	1 cut(s)	727
RsaI	GTAC	1 cut(s)	399
RsaNI	GTAC	1 cut(s)	398
RseI	CAYNNNNRTG	2 cut(s)	204, 968
SaqAI	TTAA	7 cut(s)	470, 578, 593, 798, 908, 1088, 1147
SatI	GCNGC	5 cut(s)	639, 732, 951, 1065, 1119
Sau3AI	GATC	3 cut(s)	288, 1000, 1056
SchI	GAGTC	2 cut(s)	314, 536
ScrFI	CCNGG	2 cut(s)	511, 1134
SfaNI	GCATC	2 cut(s)	319, 514
Sfr274I	CTCGAG	1 cut(s)	954
SlaI	CTCGAG	1 cut(s)	954
SmiMI	CAYNNNNRTG	2 cut(s)	204, 968
SmlI	CTYRAG	1 cut(s)	954
SmoI	CTYRAG	1 cut(s)	954
Sse9I	AATT	9 cut(s)	112, 136, 224, 265, 602, 704, 892, 1037, 1085
SsiI	CCGC	3 cut(s)	56, 524, 889
SspMI	CTAG	3 cut(s)	174, 380, 1004
StyD4I	CCNGG	2 cut(s)	509, 1132
StyI	CCWWGG	3 cut(s)	401, 480, 531
TaaI	ACNGT	3 cut(s)	332, 591, 877
TaiI	ACGT	2 cut(s)	204, 562
TaqI	TCGA	2 cut(s)	287, 955
TasI	AATT	9 cut(s)	112, 136, 224, 265, 602, 704, 892, 1037, 1085
TfiI	GAWTC	1 cut(s)	444
Tru1I	TTAA	7 cut(s)	470, 578, 593, 798, 908, 1088, 1147
Tru9I	TTAA	7 cut(s)	470, 578, 593, 798, 908, 1088, 1147
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	5 cut(s)	638, 731, 950, 1064, 1118
TspRI	CASTG	1 cut(s)	211
Tth111I	GACNNNGTC	1 cut(s)	965
VspI	ATTAAT	1 cut(s)	908
XapI	RAATTY	3 cut(s)	224, 265, 1037
XbaI	TCTAGA	1 cut(s)	1003
XcmI	CCANNNNNNNNNTGG	1 cut(s)	254
XhoI	CTCGAG	1 cut(s)	954
XmnI	GAANNNNTTC	1 cut(s)	928
XspI	CTAG	3 cut(s)	174, 380, 1004
Zsp2I	ATGCAT	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.