Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

25988818 .. 25992495

Gene Structure 3678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G019930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCCGTTCTTTCACCTGAGATTGTCTGCTCCATATTCAACCCTTGATCATGTTCCACTGTTTGGTTATGTGGCGGAAGCCAATCACTTTCCACAGAACACAGAGCATTTGAATTATCATTTACGTGTTCTGAGGAATCGGTCTCCCTCGTTTGCCTCAGTCTGTTCTTTCCCTCAACTTCATTACATTGGAGCTATGCAGATCAGTGTTGGCATGGATGAGAAATGTGATATTGCTAACCTCAGCCATTCTATAGTTAGCAGAAAGCCACGAGAGCAGCAAAACGTAAGAAAGGAGGTCAAGACTTGTGAGCGCATCAAGCGACAAACCATAGAGGCCCTAAAAGACCCCAAGGTTAGAAAGAAGATGTCCCAGCGTCCCCGTTCTCATAGTGTGGAGTCCAAGGCAAAAATGAGTTCTTCACTTAGACGGCTTTGGGGAAGGCGTCTAAAATGGAAACAGTCAAGGGAGAAACTCTTCCTGTCATGGGTAGAAAGCATAGCAGAGGCGGCTAAGACAGGTGGGAGTGAACAACAAGAGTTAAATTGGGATAGCTATGAGAATATAAGGGAAGAATTATATCTCCAACAGCTTCAGCAGGCTGCAGAAAAGAAAAAGGCAAGGGAACGGGCAAAGATGAGAGCCAAGGAAGCAGCAGCACGAGCTAAAGTAAAAAGGAAGGCAAGGCGTGCTGTTGAAAGGAGAGTAGATAGTGAGACTAACAAAGACAATGAAGAGTTGACATCTCTGAAAGGGCTGAAAGTTAAGCAGAGATCAACGAAGCTTGACAGAGAGACTTCCACAAATGATCAAGTTGCTAGTCGAAGGGACATAGTTAAATCGCAATTGCATATCTCAGCTTTGGAGAAATTGGATGCAGAGCTTATAAAGAGAGAAAAATTGCGAGCAGAAGTTTCATTTGCAGACCAGATAAGAGCTGCCAAAAACAGAAAAATGGAACAAGCTATGGCAGCAGCCCCATCTGTTGGGGTAGTAAACGAGAAACCAGGGATGCATACCCATACACTTCTGCAGTCTCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

347

Amino Acids

40.06

Weight (kDa)

10.14

Isoelectric Point (pI)

63.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	887
AccB7I	CCANNNNNTGG	2 cut(s)	62, 986
AciI	CCGC	2 cut(s)	74, 509
AcuI	CTGAAG	1 cut(s)	578
AcyI	GRCGYC	1 cut(s)	445
AfiI	CCNNNNNNNGG	3 cut(s)	62, 487, 986
AflIII	ACRYGT	1 cut(s)	124
AgsI	TTSAA	3 cut(s)	39, 112, 698
AjnI	CCWGG	1 cut(s)	1006
AluBI	AGCT	9 cut(s)	194, 555, 592, 665, 784, 860, 883, 938, 965
AluI	AGCT	9 cut(s)	194, 555, 592, 665, 784, 860, 883, 938, 965
Alw26I	GTCTC	3 cut(s)	147, 710, 788
AoxI	GGCC	1 cut(s)	336
ApeKI	GCWGC	7 cut(s)	277, 602, 653, 656, 938, 971, 974
Asp700I	GAANNNNTTC	1 cut(s)	476
AspLEI	GCGC	1 cut(s)	315
AspS9I	GGNCC	1 cut(s)	337
AsuHPI	GGTGA	1 cut(s)	5
BauI	CACGAG	2 cut(s)	270, 660
BbvCI	CCTCAGC	1 cut(s)	242
BbvI	GCAGC	7 cut(s)	289, 589, 665, 668, 925, 983, 986
BccI	CCATC	1 cut(s)	988
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	1008
BclI	TGATCA	2 cut(s)	46, 808
BcoDI	GTCTC	3 cut(s)	147, 710, 788
BfaI	CTAG	1 cut(s)	819
BfmI	CTRYAG	3 cut(s)	252, 603, 1031
BisI	GCNGC	8 cut(s)	278, 510, 603, 654, 657, 939, 972, 975
BlsI	GCNGC	8 cut(s)	279, 511, 604, 655, 658, 940, 973, 976
Bme1390I	CCNGG	1 cut(s)	1008
BmgT120I	GGNCC	1 cut(s)	337
BmrFI	CCNGG	1 cut(s)	1008
BmsI	GCATC	3 cut(s)	324, 865, 1002
Bpu10I	CCTNAGC	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	125
BsaHI	GRCGYC	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	147
BsaJI	CCNNGG	4 cut(s)	351, 402, 645, 1007
Bsc4I	CCNNNNNNNGG	3 cut(s)	62, 487, 986
BseBI	CCWGG	1 cut(s)	1008
BseDI	CCNNGG	4 cut(s)	351, 402, 645, 1007
BseGI	GGATG	3 cut(s)	223, 880, 1017
BseLI	CCNNNNNNNGG	3 cut(s)	62, 487, 986
BseMII	CTCAG	5 cut(s)	8, 122, 171, 256, 870
BseXI	GCAGC	7 cut(s)	289, 589, 665, 668, 925, 983, 986
BseYI	CCCAGC	1 cut(s)	372
BshFI	GGCC	1 cut(s)	338
BslFI	GGGAC	3 cut(s)	355, 363, 842
BslI	CCNNNNNNNGG	3 cut(s)	62, 487, 986
BsmAI	GTCTC	3 cut(s)	147, 710, 788
BsmFI	GGGAC	3 cut(s)	355, 363, 842
BsnI	GGCC	1 cut(s)	338
Bso31I	GGTCTC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	46, 201, 773, 808
BspACI	CCGC	2 cut(s)	74, 509
BspANI	GGCC	1 cut(s)	338
BspCNI	CTCAG	5 cut(s)	9, 123, 170, 255, 869
BspMAI	CTGCAG	2 cut(s)	607, 1035
BspTNI	GGTCTC	1 cut(s)	147
BssECI	CCNNGG	4 cut(s)	351, 402, 645, 1007
BssMI	GATC	4 cut(s)	46, 201, 773, 808
BssNI	GRCGYC	1 cut(s)	445
BssSI	CACGAG	2 cut(s)	270, 660
BssT1I	CCWWGG	3 cut(s)	351, 402, 645
Bst2BI	CACGAG	2 cut(s)	270, 660
Bst2UI	CCWGG	1 cut(s)	1008
Bst4CI	ACNGT	2 cut(s)	60, 462
Bst6I	CTCTTC	2 cut(s)	482, 729
BstACI	GRCGYC	1 cut(s)	445
BstAPI	GCANNNNNTGC	1 cut(s)	689
BstBAI	YACGTR	1 cut(s)	125
BstC8I	GCNNGC	3 cut(s)	600, 690, 906
BstDEI	CTNAG	8 cut(s)	17, 131, 157, 242, 425, 513, 856, 1038
BstF5I	GGATG	3 cut(s)	223, 880, 1017
BstHHI	GCGC	1 cut(s)	315
BstKTI	GATC	4 cut(s)	49, 204, 776, 811
BstMAI	GTCTC	3 cut(s)	147, 710, 788
BstMBI	GATC	4 cut(s)	46, 201, 773, 808
BstMWI	GCNNNNNNNGC	7 cut(s)	274, 319, 509, 650, 662, 689, 971
BstNI	CCWGG	1 cut(s)	1008
BstSCI	CCNGG	1 cut(s)	1006
BstSFI	CTRYAG	3 cut(s)	252, 603, 1031
BstV1I	GCAGC	7 cut(s)	289, 589, 665, 668, 925, 983, 986
BsuRI	GGCC	1 cut(s)	338
BtsCI	GGATG	3 cut(s)	223, 880, 1017
BtsIMutI	CAGTG	2 cut(s)	56, 211
Cac8I	GCNNGC	3 cut(s)	600, 690, 906
CfoI	GCGC	1 cut(s)	315
Cfr13I	GGNCC	1 cut(s)	337
CseI	GACGC	2 cut(s)	365, 434
CviAII	CATG	3 cut(s)	50, 214, 486
DdeI	CTNAG	8 cut(s)	17, 131, 157, 242, 425, 513, 856, 1038
DpnI	GATC	4 cut(s)	48, 203, 775, 810
DpnII	GATC	4 cut(s)	46, 201, 773, 808
Eam1104I	CTCTTC	2 cut(s)	482, 729
EarI	CTCTTC	2 cut(s)	482, 729
EciI	GGCGGA	1 cut(s)	89
Eco130I	CCWWGG	3 cut(s)	351, 402, 645
Eco31I	GGTCTC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	578
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	1006
EcoT14I	CCWWGG	3 cut(s)	351, 402, 645
EcoT22I	ATGCAT	1 cut(s)	1017
ErhI	CCWWGG	3 cut(s)	351, 402, 645
FaeI	CATG	3 cut(s)	53, 217, 489
FaqI	GGGAC	3 cut(s)	355, 363, 842
FatI	CATG	3 cut(s)	49, 213, 485
FbaI	TGATCA	2 cut(s)	46, 808
Fnu4HI	GCNGC	8 cut(s)	278, 510, 603, 654, 657, 939, 972, 975
FokI	GGATG	3 cut(s)	230, 887, 1024
Fsp4HI	GCNGC	8 cut(s)	278, 510, 603, 654, 657, 939, 972, 975
FspBI	CTAG	1 cut(s)	819
GlaI	GCGC	1 cut(s)	314
GluI	GCNGC	8 cut(s)	278, 510, 603, 654, 657, 939, 972, 975
GsaI	CCCAGC	1 cut(s)	376
HaeIII	GGCC	1 cut(s)	338
HgaI	GACGC	2 cut(s)	365, 434
HhaI	GCGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	445
Hin1II	CATG	3 cut(s)	53, 217, 489
Hin6I	GCGC	1 cut(s)	313
HinP1I	GCGC	1 cut(s)	313
HincII	GTYRAC	1 cut(s)	741
HindII	GTYRAC	1 cut(s)	741
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	2 cut(s)	136, 398
HphI	GGTGA	1 cut(s)	5
Hpy166II	GTNNAC	3 cut(s)	530, 741, 997
Hpy188I	TCNGA	2 cut(s)	132, 750
Hpy188III	TCNNGA	1 cut(s)	301
Hpy8I	GTNNAC	3 cut(s)	530, 741, 997
HpyAV	CCTTC	3 cut(s)	435, 673, 819
HpyCH4III	ACNGT	2 cut(s)	60, 462
HpyCH4IV	ACGT	2 cut(s)	124, 285
HpyCH4V	TGCA	7 cut(s)	199, 605, 850, 878, 923, 1015, 1033
HpyF10VI	GCNNNNNNNGC	7 cut(s)	274, 319, 509, 650, 662, 689, 971
HpyF3I	CTNAG	8 cut(s)	17, 131, 157, 242, 425, 513, 856, 1038
HpySE526I	ACGT	2 cut(s)	124, 285
Hsp92I	GRCGYC	1 cut(s)	445
Hsp92II	CATG	3 cut(s)	53, 217, 489
HspAI	GCGC	1 cut(s)	313
Ksp22I	TGATCA	2 cut(s)	46, 808
Kzo9I	GATC	4 cut(s)	46, 201, 773, 808
LmnI	GCTCC	2 cut(s)	34, 191
LpnPI	CCDG	8 cut(s)	29, 386, 494, 504, 584, 941, 993, 1020
Lsp1109I	GCAGC	7 cut(s)	289, 589, 665, 668, 925, 983, 986
LweI	GCATC	3 cut(s)	324, 865, 1002
MaeI	CTAG	1 cut(s)	819
MaeII	ACGT	2 cut(s)	124, 285
MalI	GATC	4 cut(s)	48, 203, 775, 810
MboI	GATC	4 cut(s)	46, 201, 773, 808
MboII	GAAGA	5 cut(s)	376, 411, 469, 584, 746
MfeI	CAATTG	1 cut(s)	845
MluCI	AATT	6 cut(s)	112, 544, 575, 845, 869, 899
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	610
MnlI	CCTC	8 cut(s)	126, 157, 166, 183, 251, 289, 328, 499
Mph1103I	ATGCAT	1 cut(s)	1017
MroXI	GAANNNNTTC	1 cut(s)	476
MseI	TTAA	3 cut(s)	542, 765, 837
MslI	CAYNNNNRTG	1 cut(s)	123
MspR9I	CCNGG	1 cut(s)	1008
MunI	CAATTG	1 cut(s)	845
MvaI	CCWGG	1 cut(s)	1008
MwoI	GCNNNNNNNGC	7 cut(s)	274, 319, 509, 650, 662, 689, 971
NdeII	GATC	4 cut(s)	46, 201, 773, 808
NlaIII	CATG	3 cut(s)	53, 217, 489
NsiI	ATGCAT	1 cut(s)	1017
PdmI	GAANNNNTTC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	136
PflMI	CCANNNNNTGG	2 cut(s)	62, 986
PkrI	GCNGC	8 cut(s)	279, 511, 604, 655, 658, 940, 973, 976
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
Ppu21I	YACGTR	1 cut(s)	125
PsiI	TTATAA	1 cut(s)	887
Psp6I	CCWGG	1 cut(s)	1006
PspFI	CCCAGC	1 cut(s)	372
PspGI	CCWGG	1 cut(s)	1006
PspPI	GGNCC	1 cut(s)	337
PstI	CTGCAG	2 cut(s)	607, 1035
RseI	CAYNNNNRTG	1 cut(s)	123
SaqAI	TTAA	3 cut(s)	542, 765, 837
SatI	GCNGC	8 cut(s)	278, 510, 603, 654, 657, 939, 972, 975
Sau3AI	GATC	4 cut(s)	46, 201, 773, 808
Sau96I	GGNCC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	407
ScrFI	CCNGG	1 cut(s)	1008
SfaNI	GCATC	3 cut(s)	324, 865, 1002
SfcI	CTRYAG	3 cut(s)	252, 603, 1031
SmiMI	CAYNNNNRTG	1 cut(s)	123
Sse9I	AATT	6 cut(s)	112, 544, 575, 845, 869, 899
SsiI	CCGC	2 cut(s)	74, 509
SspMI	CTAG	1 cut(s)	819
StyD4I	CCNGG	1 cut(s)	1006
StyI	CCWWGG	3 cut(s)	351, 402, 645
TaaI	ACNGT	2 cut(s)	60, 462
TaiI	ACGT	2 cut(s)	127, 288
TaqI	TCGA	1 cut(s)	823
TaqII	GACCGA	1 cut(s)	129
TasI	AATT	6 cut(s)	112, 544, 575, 845, 869, 899
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	136
Tru1I	TTAA	3 cut(s)	542, 765, 837
Tru9I	TTAA	3 cut(s)	542, 765, 837
TscAI	CASTG	2 cut(s)	63, 211
TseI	GCWGC	7 cut(s)	277, 602, 653, 656, 938, 971, 974
TspDTI	ATGAA	3 cut(s)	170, 747, 906
TspRI	CASTG	2 cut(s)	63, 211
Van91I	CCANNNNNTGG	2 cut(s)	62, 986
XmnI	GAANNNNTTC	1 cut(s)	476
XspI	CTAG	1 cut(s)	819
Zsp2I	ATGCAT	1 cut(s)	1017

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.