Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0002997

Physical Location & Seq

Genomic Coordinates Reverse (-)

11158010 .. 11159327

Gene Structure 1318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0125400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGGCACTTATAATATCATCTTTGGGTTCCTGTTATCTTTCTCTTTGTCAGTTGCCACAGCATCTGATCATAGTCCACTTCAAGATTTCTGTGTGGCAGACCCAGAAAGTCGAGTGCTGCTGAATGGCCTAGCTTGCAAGGACCCCAAGACAGTTAAAGCCAACGATTTTTCATTTGGTGGGCTTCACTTAGCAGCCAATACATCAAACCCAATTGGGTCAAGTGTGACACCGGTGACTGTATCCCAACTTCCAGGACTCAATACTCTTGGCATTTCACTAGTCCGCATCGACTATGCACCATCAGGCATCAACCCTCCCCACACTCATCCTCGTGCCTCCGAAATCTTGACCATCCTTGAAGGCTGCCTTGAAGTTGGGTTCGTAACGTCGAGCCCCGAAAATCGTCACATCACCAAGGTGTTGCAGAAGGGCGATGTGTTTGTTTTCCCAATCGGACTCGTCCACTACCAGAGAAATGTAGGAACTGGCAATGCTGTTGCTATTGCTGCCCTGAGCAGCCAAAATCCTGGTGTGGTAATAATTTCAAGTGCTGTCTTTGGGTCCAGGCCTAGTATTGGTAGTGAGATTCTCGTGAAGGCTTTGCAAGTTGATCAAGGGGTTGTCAATTACCTCCAGTCCATATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NUMOD3

Protein Analysis

216

Amino Acids

22.74

Weight (kDa)

6.27

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	65 - 207	1.3e-47	Cupin
Cupin_2	PF07883	97 - 169	5.4e-10	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002997)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53250
fragaria_vesca	FvH4_3g18610 FvH4_3g18610
malus_domestica	MD11G1260000.v1.1
prunus_persica	Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1 Prupe.4G170000_v2.0.a1
pyrus_communis	pycom11g22950
rosa_chinensis	RchiOBHm_Chr5g0031441
rosa_laevigata	RLG00000033307
rosa_multiflora	Rmu_sc0002426.1_g000010 Rmu_sc0014478.1_g000010 Rmu_ssc0000110.1_g000011
rosa_roxburghii	Rroxscaffold_1G00048910
rosa_rugosa	Rorug05G0125400 Rorug05G0125500 Rorug05G0125600
rosa_samantha	Rh5AG218200 Rh5BG217800 Rh5CG241500 Rh5DG223100
rosa_wichuraiana	Rw5G019930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	12
AciI	CCGC	1 cut(s)	286
AfiI	CCNNNNNNNGG	1 cut(s)	578
AgeI	ACCGGT	1 cut(s)	232
AgsI	TTSAA	4 cut(s)	83, 362, 374, 549
AhlI	ACTAGT	1 cut(s)	280
AjnI	CCWGG	3 cut(s)	253, 529, 566
AleI	CACNNNNGTG	1 cut(s)	419
AluBI	AGCT	1 cut(s)	134
AluI	AGCT	1 cut(s)	134
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	127, 569
ApeKI	GCWGC	5 cut(s)	118, 194, 366, 509, 519
AsiGI	ACCGGT	1 cut(s)	232
AspS9I	GGNCC	2 cut(s)	142, 564
AsuHPI	GGTGA	2 cut(s)	247, 406
AvaII	GGWCC	2 cut(s)	142, 564
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	398
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BauI	CACGAG	2 cut(s)	333, 593
BbvI	GCAGC	5 cut(s)	105, 206, 353, 496, 531
BccI	CCATC	2 cut(s)	310, 362
BciT130I	CCWGG	3 cut(s)	255, 531, 568
BciVI	GTATCC	1 cut(s)	253
BclI	TGATCA	2 cut(s)	67, 613
BcuI	ACTAGT	1 cut(s)	280
BfaI	CTAG	3 cut(s)	131, 281, 573
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	5 cut(s)	119, 195, 367, 510, 520
BlsI	GCNGC	5 cut(s)	120, 196, 368, 511, 521
Bme1390I	CCNGG	3 cut(s)	255, 531, 568
Bme18I	GGWCC	2 cut(s)	142, 564
BmgT120I	GGNCC	2 cut(s)	142, 564
BmiI	GGNNCC	3 cut(s)	29, 144, 565
BmrFI	CCNGG	3 cut(s)	255, 531, 568
BmsI	GCATC	3 cut(s)	71, 297, 318
BpmI	CTGGAG	1 cut(s)	620
Bpu10I	CCTNAGC	1 cut(s)	515
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	578
Bse118I	RCCGGY	1 cut(s)	232
Bse1I	ACTGG	2 cut(s)	493, 637
Bse3DI	GCAATG	1 cut(s)	499
BseBI	CCWGG	3 cut(s)	255, 531, 568
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	328, 354
BseLI	CCNNNNNNNGG	1 cut(s)	578
BseMI	GCAATG	1 cut(s)	499
BseMII	CTCAG	1 cut(s)	506
BseNI	ACTGG	2 cut(s)	493, 637
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	5 cut(s)	105, 206, 353, 496, 531
BshFI	GGCC	2 cut(s)	129, 571
BshTI	ACCGGT	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	578
BsnI	GGCC	2 cut(s)	129, 571
Bsp1286I	GDGCHC	2 cut(s)	8, 398
Bsp143I	GATC	2 cut(s)	67, 613
BspACI	CCGC	1 cut(s)	286
BspANI	GGCC	2 cut(s)	129, 571
BspCNI	CTCAG	1 cut(s)	507
BspLI	GGNNCC	3 cut(s)	29, 144, 565
BsrDI	GCAATG	1 cut(s)	499
BsrFI	RCCGGY	1 cut(s)	232
BsrI	ACTGG	2 cut(s)	493, 637
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	2 cut(s)	67, 613
BssSI	CACGAG	2 cut(s)	333, 593
BssT1I	CCWWGG	1 cut(s)	417
Bst2BI	CACGAG	2 cut(s)	333, 593
Bst2UI	CCWGG	3 cut(s)	255, 531, 568
Bst4CI	ACNGT	2 cut(s)	154, 241
BstC8I	GCNNGC	1 cut(s)	136
BstDEI	CTNAG	2 cut(s)	190, 515
BstF5I	GGATG	2 cut(s)	328, 354
BstKTI	GATC	2 cut(s)	70, 616
BstMBI	GATC	2 cut(s)	67, 613
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 509
BstNI	CCWGG	3 cut(s)	255, 531, 568
BstSCI	CCNGG	3 cut(s)	253, 529, 566
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	5 cut(s)	105, 206, 353, 496, 531
BstXI	CCANNNNNNTGG	1 cut(s)	530
BsuI	GTATCC	1 cut(s)	253
BsuRI	GGCC	2 cut(s)	129, 571
BtgZI	GCGATG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	328, 354
Cac8I	GCNNGC	1 cut(s)	136
CaiI	CAGNNNCTG	1 cut(s)	65
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	142, 564
CspAI	ACCGGT	1 cut(s)	232
DdeI	CTNAG	2 cut(s)	190, 515
DpnI	GATC	2 cut(s)	69, 615
DpnII	GATC	2 cut(s)	67, 613
Eco130I	CCWWGG	1 cut(s)	417
Eco147I	AGGCCT	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	398
Eco47I	GGWCC	2 cut(s)	142, 564
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	3 cut(s)	253, 529, 566
EcoT14I	CCWWGG	1 cut(s)	417
EcoT38I	GRGCYC	1 cut(s)	398
ErhI	CCWWGG	1 cut(s)	417
FaiI	YATR	4 cut(s)	12, 72, 297, 644
FalI	AAGNNNNNCTT	2 cut(s)	354, 386
FbaI	TGATCA	2 cut(s)	67, 613
Fnu4HI	GCNGC	5 cut(s)	119, 195, 367, 510, 520
FokI	GGATG	2 cut(s)	315, 341
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	5 cut(s)	119, 195, 367, 510, 520
FspBI	CTAG	3 cut(s)	131, 281, 573
GluI	GCNGC	5 cut(s)	119, 195, 367, 510, 520
GsuI	CTGGAG	1 cut(s)	620
HaeIII	GGCC	2 cut(s)	129, 571
HapII	CCGG	1 cut(s)	233
HinfI	GANTC	3 cut(s)	258, 459, 589
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	2 cut(s)	247, 406
Hpy166II	GTNNAC	2 cut(s)	77, 466
Hpy188I	TCNGA	3 cut(s)	67, 343, 458
Hpy188III	TCNNGA	3 cut(s)	83, 349, 595
Hpy8I	GTNNAC	2 cut(s)	77, 466
Hpy99I	CGWCG	1 cut(s)	394
HpyAV	CCTTC	3 cut(s)	356, 424, 592
HpyCH4III	ACNGT	2 cut(s)	154, 241
HpyCH4IV	ACGT	1 cut(s)	389
HpyCH4V	TGCA	4 cut(s)	138, 299, 427, 607
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 509
HpyF3I	CTNAG	2 cut(s)	190, 515
HpySE526I	ACGT	1 cut(s)	389
Ksp22I	TGATCA	2 cut(s)	67, 613
Kzo9I	GATC	2 cut(s)	67, 613
Lsp1109I	GCAGC	5 cut(s)	105, 206, 353, 496, 531
LweI	GCATC	3 cut(s)	71, 297, 318
MaeI	CTAG	3 cut(s)	131, 281, 573
MaeII	ACGT	1 cut(s)	389
MaeIII	GTNAC	4 cut(s)	226, 235, 385, 407
MalI	GATC	2 cut(s)	69, 615
MboI	GATC	2 cut(s)	67, 613
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	8, 398
MluCI	AATT	3 cut(s)	213, 543, 628
MlyI	GAGTC	2 cut(s)	252, 453
MnlI	CCTC	4 cut(s)	327, 342, 349, 644
MseI	TTAA	1 cut(s)	156
MslI	CAYNNNNRTG	2 cut(s)	333, 419
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	3 cut(s)	255, 531, 568
MunI	CAATTG	1 cut(s)	213
MvaI	CCWGG	3 cut(s)	255, 531, 568
MwoI	GCNNNNNNNGC	2 cut(s)	135, 509
NdeII	GATC	2 cut(s)	67, 613
NlaIV	GGNNCC	3 cut(s)	29, 144, 565
NmuCI	GTSAC	3 cut(s)	226, 235, 407
OliI	CACNNNNGTG	1 cut(s)	419
PceI	AGGCCT	1 cut(s)	571
PfeI	GAWTC	1 cut(s)	589
PfoI	TCCNGGA	1 cut(s)	253
PinAI	ACCGGT	1 cut(s)	232
PkrI	GCNGC	5 cut(s)	120, 196, 368, 511, 521
PleI	GAGTC	2 cut(s)	252, 453
PpsI	GAGTC	2 cut(s)	252, 453
PpuMI	RGGWCCY	1 cut(s)	142
PsiI	TTATAA	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	253, 529, 566
PspGI	CCWGG	3 cut(s)	253, 529, 566
PspN4I	GGNNCC	3 cut(s)	29, 144, 565
PspPI	GGNCC	2 cut(s)	142, 564
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	65
RseI	CAYNNNNRTG	2 cut(s)	333, 419
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	5 cut(s)	119, 195, 367, 510, 520
Sau3AI	GATC	2 cut(s)	67, 613
Sau96I	GGNCC	2 cut(s)	142, 564
SchI	GAGTC	2 cut(s)	252, 453
ScrFI	CCNGG	3 cut(s)	255, 531, 568
SduI	GDGCHC	2 cut(s)	8, 398
SetI	ASST	4 cut(s)	136, 392, 423, 636
SfaNI	GCATC	3 cut(s)	71, 297, 318
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	2 cut(s)	142, 564
SmiMI	CAYNNNNRTG	2 cut(s)	333, 419
SpeI	ACTAGT	1 cut(s)	280
Sse9I	AATT	3 cut(s)	213, 543, 628
SseBI	AGGCCT	1 cut(s)	571
SsiI	CCGC	1 cut(s)	286
SspMI	CTAG	3 cut(s)	131, 281, 573
StuI	AGGCCT	1 cut(s)	571
StyD4I	CCNGG	3 cut(s)	253, 529, 566
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	154, 241
TaiI	ACGT	1 cut(s)	392
TaqI	TCGA	3 cut(s)	112, 291, 392
TasI	AATT	3 cut(s)	213, 543, 628
TfiI	GAWTC	1 cut(s)	589
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	3 cut(s)	226, 235, 407
TseI	GCWGC	5 cut(s)	118, 194, 366, 509, 519
Tsp45I	GTSAC	3 cut(s)	226, 235, 407
TspDTI	ATGAA	1 cut(s)	162
VpaK11BI	GGWCC	2 cut(s)	142, 564
XspI	CTAG	3 cut(s)	131, 281, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.