FvH4_3g27030

microtubule nucleation by microtubule organizing center

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
20121786 .. 20133243
11458 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27030.t1

Sequence Viewer

Length: 1137 bp
ATGCTCCGATACAAGTATGTCAGCAAGTTAACTATTAACTTCCTTGAAGAAGGATTTGATTTGCAAGAACATTTGCTGGCTCTGCGTCGATACCACTTCATGGAACTAGCAGACTGGGCAGATTTGTTTATTATGTCCCTTTGGCATCATAAATGGAGTATTACACAGGCAGATCATAGACTTTCCGAAATTCAAAGTTTTCTTGAGTCATCGGTTCAGAGGTCATCATGTGAACGTGATCATATTAAGGACAGATTGTTTGTGTACTTGAAAGGACATGCTGCAGTGCCTCTTTCAGCATCTGCTATAGGAGTCCATTCCTTTAACTTTTTTGGTTTGGGATATCGAGTAGACTGGCCCATCAGCATTGTTTTGACTCCTGGTGCATTGAAAATATATGATGAGATGTTGTGTTTCTTGATACATGTGAAACTTGCTCTGTTTTCATTGAATGATGTGTGGCGCCAATTGAAGATGCAGGATCTGGTCCGCTTGATTGGTTGGAATAACCACTCTGAGGAACATGAAGAGGAAGTGACACATTTTAATGCAATAGTGAAAATGAGATTTTGGAGAGAAAAATTTAGAGAACAAGTACGACCAGTGGATGAAAGCATCAGGTCAATCACTTTGTATCCACATTGCAGCAATATGTGGAGTCACAACTATCACATGTATCATGGTGCAGATTTCTACTCACTTAAGCTTAAGGTCAAAGATATGATGGATCTTCAGTCTGTACACATGGCATATCTCTCAGATTCACTTCACATATGTTTCCTCTCTGATGAAACAAAACCTATAGCTTGCATCATTGAGAGCATTCTGCAGTGTGCTCTAGACTTCAGGTCTTGTCTTACTGGGGGAGTATGGAATGCTGGAACAGGCCAAGGGAATTTAGTTGCAACACTCTCTGGAATCAATATATCCCAGGTTATTGCCATAAAGCGAACCTTTGACAAAAATATGAAAGAATTGCACTCCTGTTACCTCAAATCACCTAAACATGGTGAGTTTGGACTCTCTCGCTTCTTGGAATACCTGAATTTCAACAAGTATTACTCAGATGCTGCTTCCGTGGTCCACAGCTCTGTGACACGAGCCATTACTGATAAATCAGGATCTGTATATACTTGA

Protein Analysis

379

Amino Acids

43.89

Weight (kDa)

7.06

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCP_C_terminal PF04130 21 - 354 4.8e-47 Gamma tubulin complex component C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AccB7I CCANNNNNTGG 1 cut(s) 100
AccI GTMKAC 1 cut(s) 351
AciI CCGC 1 cut(s) 490
AclWI GGATC 3 cut(s) 489, 735, 1129
AcsI RAATTY 4 cut(s) 189, 581, 895, 1045
AcuI CTGAAG 2 cut(s) 716, 829
AcyI GRCGYC 1 cut(s) 463
AfaI GTAC 3 cut(s) 266, 597, 741
AfiI CCNNNNNNNGG 3 cut(s) 100, 517, 1007
AflII CTTAAG 2 cut(s) 701, 707
AflIII ACRYGT 2 cut(s) 424, 672
AgsI TTSAA 7 cut(s) 47, 194, 271, 391, 451, 472, 1051
AhdI GACNNNNNGTC 1 cut(s) 847
AjnI CCWGG 2 cut(s) 379, 930
AluBI AGCT 3 cut(s) 706, 806, 1089
AluI AGCT 3 cut(s) 706, 806, 1089
Alw21I GWGCWC 1 cut(s) 838
AlwI GGATC 3 cut(s) 489, 735, 1129
AlwNI CAGNNNCTG 4 cut(s) 302, 484, 1070, 1124
AoxI GGCC 2 cut(s) 356, 886
ApeKI GCWGC 3 cut(s) 281, 645, 1070
ApoI RAATTY 4 cut(s) 189, 581, 895, 1045
ArsI GACNNNNNNTTYG 2 cut(s) 242, 274
AspLEI GCGC 1 cut(s) 465
AspS9I GGNCC 3 cut(s) 357, 487, 1081
AsuHPI GGTGA 2 cut(s) 990, 1022
AvaII GGWCC 2 cut(s) 487, 1081
BanI GGYRCC 1 cut(s) 462
BauI CACGAG 1 cut(s) 1098
Bbv12I GWGCWC 1 cut(s) 838
BbvI GCAGC 3 cut(s) 268, 657, 1057
BccI CCATC 2 cut(s) 368, 718
BciT130I CCWGG 2 cut(s) 381, 932
BciVI GTATCC 1 cut(s) 645
BclI TGATCA 1 cut(s) 238
BfaI CTAG 2 cut(s) 107, 839
BfmI CTRYAG 4 cut(s) 282, 306, 801, 827
BfoI RGCGCY 1 cut(s) 466
BfrI CTTAAG 2 cut(s) 701, 707
BfuI GTATCC 1 cut(s) 645
BisI GCNGC 3 cut(s) 282, 646, 1071
BlsI GCNGC 3 cut(s) 283, 647, 1072
Bme1390I CCNGG 2 cut(s) 381, 932
Bme18I GGWCC 2 cut(s) 487, 1081
BmeRI GACNNNNNGTC 1 cut(s) 847
BmgT120I GGNCC 3 cut(s) 357, 487, 1081
BmiI GGNNCC 1 cut(s) 464
BmrFI CCNGG 2 cut(s) 381, 932
BmrI ACTGGG 2 cut(s) 124, 870
BmsI GCATC 6 cut(s) 154, 308, 465, 624, 819, 1057
BmuI ACTGGG 2 cut(s) 124, 870
BpuEI CTTGAG 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 463
BsaJI CCNNGG 3 cut(s) 889, 930, 1077
Bsc4I CCNNNNNNNGG 3 cut(s) 100, 517, 1007
Bse1I ACTGG 4 cut(s) 119, 359, 602, 865
Bse3DI GCAATG 1 cut(s) 640
BseBI CCWGG 2 cut(s) 381, 932
BseDI CCNNGG 3 cut(s) 889, 930, 1077
BseGI GGATG 1 cut(s) 613
BseLI CCNNNNNNNGG 3 cut(s) 100, 517, 1007
BseMI GCAATG 1 cut(s) 640
BseMII CTCAG 3 cut(s) 507, 771, 1077
BseNI ACTGG 4 cut(s) 119, 359, 602, 865
BseXI GCAGC 3 cut(s) 268, 657, 1057
BsgI GTGCAG 1 cut(s) 705
BshFI GGCC 2 cut(s) 358, 888
BshNI GGYRCC 1 cut(s) 462
BsiHKAI GWGCWC 1 cut(s) 838
BslFI GGGAC 1 cut(s) 121
BslI CCNNNNNNNGG 3 cut(s) 100, 517, 1007
BsmFI GGGAC 1 cut(s) 121
BsmI GAATGC 2 cut(s) 822, 880
BsnI GGCC 2 cut(s) 358, 888
Bsp1286I GDGCHC 1 cut(s) 838
Bsp1407I TGTACA 1 cut(s) 739
Bsp143I GATC 5 cut(s) 172, 238, 481, 727, 1121
BspACI CCGC 1 cut(s) 490
BspANI GGCC 2 cut(s) 358, 888
BspCNI CTCAG 3 cut(s) 508, 770, 1076
BspLI GGNNCC 1 cut(s) 464
BspMAI CTGCAG 2 cut(s) 286, 831
BspPI GGATC 3 cut(s) 489, 735, 1129
BspT107I GGYRCC 1 cut(s) 462
BspTI CTTAAG 2 cut(s) 701, 707
BsrDI GCAATG 1 cut(s) 640
BsrGI TGTACA 1 cut(s) 739
BsrI ACTGG 4 cut(s) 119, 359, 602, 865
BssECI CCNNGG 3 cut(s) 889, 930, 1077
BssMI GATC 5 cut(s) 172, 238, 481, 727, 1121
BssNI GRCGYC 1 cut(s) 463
BssSI CACGAG 1 cut(s) 1098
BssT1I CCWWGG 1 cut(s) 889
Bst2BI CACGAG 1 cut(s) 1098
Bst2UI CCWGG 2 cut(s) 381, 932
Bst6I CTCTTC 1 cut(s) 522
BstACI GRCGYC 1 cut(s) 463
BstAFI CTTAAG 2 cut(s) 701, 707
BstAUI TGTACA 1 cut(s) 739
BstC8I GCNNGC 2 cut(s) 78, 808
BstDEI CTNAG 3 cut(s) 516, 757, 1063
BstDSI CCRYGG 1 cut(s) 1077
BstF5I GGATG 1 cut(s) 613
BstH2I RGCGCY 1 cut(s) 466
BstHHI GCGC 1 cut(s) 465
BstKTI GATC 5 cut(s) 175, 241, 484, 730, 1124
BstMBI GATC 5 cut(s) 172, 238, 481, 727, 1121
BstMWI GCNNNNNNNGC 2 cut(s) 82, 116
BstNI CCWGG 2 cut(s) 381, 932
BstNSI RCATGY 3 cut(s) 281, 428, 676
BstSCI CCNGG 2 cut(s) 379, 930
BstSFI CTRYAG 4 cut(s) 282, 306, 801, 827
BstV1I GCAGC 3 cut(s) 268, 657, 1057
BstX2I RGATCY 3 cut(s) 481, 727, 1121
BstYI RGATCY 3 cut(s) 481, 727, 1121
BsuI GTATCC 1 cut(s) 645
BsuRI GGCC 2 cut(s) 358, 888
BtgI CCRYGG 1 cut(s) 1077
BtsCI GGATG 1 cut(s) 613
BtsI GCAGTG 2 cut(s) 291, 836
BtsIMutI CAGTG 3 cut(s) 291, 609, 836
Cac8I GCNNGC 2 cut(s) 78, 808
CaiI CAGNNNCTG 4 cut(s) 302, 484, 1070, 1124
CfoI GCGC 1 cut(s) 465
Cfr13I GGNCC 3 cut(s) 357, 487, 1081
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 265, 596, 740
CviAII CATG 9 cut(s) 100, 228, 278, 425, 524, 673, 680, 745, 1007
CviJI RGCY 7 cut(s) 80, 358, 706, 806, 888, 1089, 1103
CviKI_1 RGCY 7 cut(s) 80, 358, 706, 806, 888, 1089, 1103
CviQI GTAC 3 cut(s) 265, 596, 740
DdeI CTNAG 3 cut(s) 516, 757, 1063
DinI GGCGCC 1 cut(s) 464
DpnI GATC 5 cut(s) 174, 240, 483, 729, 1123
DpnII GATC 5 cut(s) 172, 238, 481, 727, 1121
DriI GACNNNNNGTC 1 cut(s) 847
Eam1104I CTCTTC 1 cut(s) 522
Eam1105I GACNNNNNGTC 1 cut(s) 847
EarI CTCTTC 1 cut(s) 522
Eco130I CCWWGG 1 cut(s) 889
Eco32I GATATC 1 cut(s) 344
Eco47I GGWCC 2 cut(s) 487, 1081
Eco57I CTGAAG 2 cut(s) 716, 829
EcoRII CCWGG 2 cut(s) 379, 930
EcoRV GATATC 1 cut(s) 344
EcoT14I CCWWGG 1 cut(s) 889
EgeI GGCGCC 1 cut(s) 464
EheI GGCGCC 1 cut(s) 464
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 9 cut(s) 103, 231, 281, 428, 527, 676, 683, 748, 1010
FalI AAGNNNNNCTT 2 cut(s) 938, 970
FaqI GGGAC 1 cut(s) 121
FatI CATG 9 cut(s) 99, 227, 277, 424, 523, 672, 679, 744, 1006
FauNDI CATATG 1 cut(s) 773
FbaI TGATCA 1 cut(s) 238
FblI GTMKAC 1 cut(s) 351
Fnu4HI GCNGC 3 cut(s) 282, 646, 1071
FokI GGATG 1 cut(s) 620
Fsp4HI GCNGC 3 cut(s) 282, 646, 1071
FspBI CTAG 2 cut(s) 107, 839
GlaI GCGC 1 cut(s) 464
GluI GCNGC 3 cut(s) 282, 646, 1071
HaeII RGCGCY 1 cut(s) 466
HaeIII GGCC 2 cut(s) 358, 888
HgaI GACGC 1 cut(s) 74
HhaI GCGC 1 cut(s) 465
Hin1I GRCGYC 1 cut(s) 463
Hin1II CATG 9 cut(s) 103, 231, 281, 428, 527, 676, 683, 748, 1010
Hin6I GCGC 1 cut(s) 463
HinP1I GCGC 1 cut(s) 463
HincII GTYRAC 1 cut(s) 30
HindII GTYRAC 1 cut(s) 30
HindIII AAGCTT 1 cut(s) 704
HinfI GANTC 7 cut(s) 206, 312, 376, 658, 761, 918, 1020
HpaI GTTAAC 1 cut(s) 30
HphI GGTGA 2 cut(s) 990, 1022
Hpy166II GTNNAC 6 cut(s) 30, 233, 265, 352, 742, 1084
Hpy188I TCNGA 7 cut(s) 8, 187, 219, 517, 760, 787, 1066
Hpy188III TCNNGA 5 cut(s) 203, 418, 839, 915, 1119
Hpy8I GTNNAC 6 cut(s) 30, 233, 265, 352, 742, 1084
Hpy99I CGWCG 1 cut(s) 90
HpyAV CCTTC 1 cut(s) 44
HpyCH4IV ACGT 1 cut(s) 235
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 116
HpyF3I CTNAG 3 cut(s) 516, 757, 1063
HpySE526I ACGT 1 cut(s) 235
Hsp92I GRCGYC 1 cut(s) 463
Hsp92II CATG 9 cut(s) 103, 231, 281, 428, 527, 676, 683, 748, 1010
HspAI GCGC 1 cut(s) 463
KasI GGCGCC 1 cut(s) 462
Ksp22I TGATCA 1 cut(s) 238
KspAI GTTAAC 1 cut(s) 30
Kzo9I GATC 5 cut(s) 172, 238, 481, 727, 1121
LmnI GCTCC 1 cut(s) 9
Lsp1109I GCAGC 3 cut(s) 268, 657, 1057
LweI GCATC 6 cut(s) 154, 308, 465, 624, 819, 1057
MaeI CTAG 2 cut(s) 107, 839
MaeII ACGT 1 cut(s) 235
MaeIII GTNAC 4 cut(s) 535, 659, 986, 1093
MalI GATC 5 cut(s) 174, 240, 483, 729, 1123
MboI GATC 5 cut(s) 172, 238, 481, 727, 1121
MboII GAAGA 4 cut(s) 59, 484, 539, 722
MfeI CAATTG 1 cut(s) 467
MflI RGATCY 3 cut(s) 481, 727, 1121
MhlI GDGCHC 1 cut(s) 838
MluCI AATT 6 cut(s) 189, 467, 581, 895, 974, 1045
Mly113I GGCGCC 1 cut(s) 463
MlyI GAGTC 5 cut(s) 215, 321, 370, 667, 1014
MmeI TCCRAC 1 cut(s) 482
MnlI CCTC 6 cut(s) 213, 300, 511, 523, 791, 1001
MseI TTAA 7 cut(s) 29, 36, 246, 324, 546, 702, 708
MslI CAYNNNNRTG 1 cut(s) 546
MspCI CTTAAG 2 cut(s) 701, 707
MspR9I CCNGG 2 cut(s) 381, 932
MunI CAATTG 1 cut(s) 467
Mva1269I GAATGC 2 cut(s) 822, 880
MvaI CCWGG 2 cut(s) 381, 932
MwoI GCNNNNNNNGC 2 cut(s) 82, 116
NarI GGCGCC 1 cut(s) 463
NdeI CATATG 1 cut(s) 773
NdeII GATC 5 cut(s) 172, 238, 481, 727, 1121
NlaIII CATG 9 cut(s) 103, 231, 281, 428, 527, 676, 683, 748, 1010
NlaIV GGNNCC 1 cut(s) 464
NmuCI GTSAC 3 cut(s) 535, 659, 1093
NspI RCATGY 3 cut(s) 281, 428, 676
PciI ACATGT 2 cut(s) 424, 672
PctI GAATGC 2 cut(s) 822, 880
PfeI GAWTC 2 cut(s) 761, 918
PflMI CCANNNNNTGG 1 cut(s) 100
PkrI GCNGC 3 cut(s) 283, 647, 1072
PleI GAGTC 5 cut(s) 214, 320, 370, 666, 1014
PluTI GGCGCC 1 cut(s) 466
PpsI GAGTC 5 cut(s) 214, 320, 370, 666, 1014
PscI ACATGT 2 cut(s) 424, 672
Psp6I CCWGG 2 cut(s) 379, 930
PspGI CCWGG 2 cut(s) 379, 930
PspN4I GGNNCC 1 cut(s) 464
PspPI GGNCC 3 cut(s) 357, 487, 1081
PstI CTGCAG 2 cut(s) 286, 831
PstNI CAGNNNCTG 4 cut(s) 302, 484, 1070, 1124
PsuI RGATCY 3 cut(s) 481, 727, 1121
RsaI GTAC 3 cut(s) 266, 597, 741
RsaNI GTAC 3 cut(s) 265, 596, 740
RseI CAYNNNNRTG 1 cut(s) 546
SaqAI TTAA 7 cut(s) 29, 36, 246, 324, 546, 702, 708
SatI GCNGC 3 cut(s) 282, 646, 1071
Sau3AI GATC 5 cut(s) 172, 238, 481, 727, 1121
Sau96I GGNCC 3 cut(s) 357, 487, 1081
SchI GAGTC 5 cut(s) 215, 321, 370, 667, 1014
ScrFI CCNGG 2 cut(s) 381, 932
SduI GDGCHC 1 cut(s) 838
SfaNI GCATC 6 cut(s) 154, 308, 465, 624, 819, 1057
SfcI CTRYAG 4 cut(s) 282, 306, 801, 827
SfoI GGCGCC 1 cut(s) 464
SinI GGWCC 2 cut(s) 487, 1081
SmiMI CAYNNNNRTG 1 cut(s) 546
SmlI CTYRAG 3 cut(s) 203, 701, 707
SmoI CTYRAG 3 cut(s) 203, 701, 707
Sse9I AATT 6 cut(s) 189, 467, 581, 895, 974, 1045
SsiI CCGC 1 cut(s) 490
SspDI GGCGCC 1 cut(s) 462
SspMI CTAG 2 cut(s) 107, 839
StyD4I CCNGG 2 cut(s) 379, 930
StyI CCWWGG 1 cut(s) 889
TaiI ACGT 1 cut(s) 238
TaqI TCGA 2 cut(s) 88, 346
TasI AATT 6 cut(s) 189, 467, 581, 895, 974, 1045
TatI WGTACW 2 cut(s) 264, 739
TfiI GAWTC 2 cut(s) 761, 918
Tru1I TTAA 7 cut(s) 29, 36, 246, 324, 546, 702, 708
Tru9I TTAA 7 cut(s) 29, 36, 246, 324, 546, 702, 708
TscAI CASTG 3 cut(s) 291, 609, 836
TseFI GTSAC 3 cut(s) 535, 659, 1093
TseI GCWGC 3 cut(s) 281, 645, 1070
Tsp45I GTSAC 3 cut(s) 535, 659, 1093
TspDTI ATGAA 6 cut(s) 88, 435, 540, 624, 804, 983
TspGWI ACGGA 1 cut(s) 1066
TspRI CASTG 3 cut(s) 291, 609, 836
Van91I CCANNNNNTGG 1 cut(s) 100
Vha464I CTTAAG 2 cut(s) 701, 707
VpaK11BI GGWCC 2 cut(s) 487, 1081
XapI RAATTY 4 cut(s) 189, 581, 895, 1045
XbaI TCTAGA 1 cut(s) 838
XceI RCATGY 3 cut(s) 281, 428, 676
XmiI GTMKAC 1 cut(s) 351
XspI CTAG 2 cut(s) 107, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.