Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Forward (+)

45811412 .. 45823437

Gene Structure 12026 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00032160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3657 bp

ATGGCTGTGGACACCAATTTCGCATCCTCATTGCTCCAGAATCTGAACCTCGAAGATCCATTGCTTCCTCCAACCACATGGGAATCCATCCCTTCCGAAAGCGGCCATTTCCATCTTCCAACCTCCACCTCTCACTCCCTCTACCACGCCTCCACCGTCTCCGAGGCGAGTCTGGTGCGGCTGGCGATGAATGCACTGCAAGGAGTTGAATCCTCCCTTATTAGTGTCCAAAAGCTTTCTGCTGCGTTTCGCTCCGATCCGGCTGATAGGACCTTCCATCAGGTTCCGAGTCTGTGGAGTAGGTCTTCCAGCACTCATGCTTTGGGAAATATTCTCAACTCCATAGGCTGCTCAGGTTTGCTGGTCTTTCTTCTCGGAAAATTCGTCGATTACTTTACCAATTTGAATGTGGAAAGTCGAAATGAAGCTCCAGCAAAACAGTGCGCTCCGTATAGTCTTGTTAATCATGCTTTTGCTGTTGCGGTGGGGAAGGTTGTGGAGGGTTACATGTGTGCTTTGGATACCTTGTATGCATCTGTGGGTGTAAGGCGGCGCTCTTCTTCGGGCTCGCCTTCTGCGGTGGGATGTCTCAACAGTGTAGTCCATTCTGAGCTTACTTTGTTGGAGCTGTATTTGCACACAAAGGAATTGAGGACTCAGATTGAATCCCTTACTAACATATGCAACTTATATCAGTTTTCTGATTGCTTCTCGGCGTCTTCTTTTGATGAGTTACTTACGAAAGCCAAAGCTGAGTTTTGTAATTTCTACAGAGGGGTGACCTACTCACGTATCTGTATACTCAGTTACAGGTTAGCTTCAAATTACTGCTCTATTCGACTTGTTCTGGAAATTATATTCACTGGCCTTATTTGTTATGTTGCTGATCCTGCTCATCGTCCTGTACTAAAATTTCTTTTTCTTCGTACATGTGAACCATACTTCGGATTTATAAGATCATGGATATTCAAAGCTGAGATTAGCGATCCTTATGAGGAGTTTTTGGTTGAATATGTTCACTCTCCTAATCCATCTGTTGAAGCTGGTATCTCTATTGACTTCCCATTGGCAACTATTAGGGAACGAGATGGAGTTCCTGTTCCTTGTTTTTTGAAGGACTTCTTGATTCCACTTTTCAGAGCTGGTCAGCAGCTGCAAGTTCTAGCGAAATTGCTTGAATTGTGTACTTTTGTTGCCCCTAAGAACCATACTTATGAGAGTTTTCTTCCCTGCTGGAGTGGGTTTTCAAGCAATTGTCCATCTTATGCATCTCCATTGACGTTCAGCAAAGGAAATATAGAGGCCATGGTAATTTCACAAGACACACTGCCTGTTCTCTTGGATAATAGTGGAAGGAGTTCAACCATCCCAGTTTTAGTCCCACTGGATGACAGTTTTATTGCTCCTTCAACAGATGATGAAAGGGAGTCAAATGTGGTGGCTGATGATTTGGATTCAGACGAGTTAAGTACAAGAGACAATGTATGTTACACTGCAGATGCATACGAGTCATCTGAATGTTCAAGCTCCACTATATCTGAAGAGCAAAATGTGTTCGAGCAGACGACTGAGTTCCCTATTCACGTTGTAGGGGAAGAACAAAAGTATTTATCTGCTTTAAGCTTCTCAATGAGTATTCCAGTTGATACTTTGCAAAAGCCCCATGGATCTGCAGATTCATGTCATATAGACAAGATTAGTAGAAGTTGTGAAAGAAAAGATGCCTTTGGGCATTCTCATCATAAAAGCATACTTACGAGTCAGATATTGGATGTTCAATTTTCAGATTGTCTTTCTGATAAGGATTGGCCGGAAAGAGATTATTTTGAGAATCAGTCTGTCATTGATATAGAGTACAAAGAAGGTCTGAAGTCACGTCGAACGGACTTTGCCTCAAAGGTGAATGAAAGAATAATGGGATCGTTAAAGGAAGGTTCATCATATTTTAGAAAAAGAATCATGGATAATAATGCTTTAATAGAAGAAGCCTTTGGCAAGGTTGAACCTCAAAAGGCCAGTTGTACTTCTGATACATTTGCATTACAACAGTGGAAGGTTAATTACCATAACAATTTTCTAAGCATGAACCCAATGTTGACAAAAAATAATTTCCTTCACCTAACATCTAGGCCTGGAGAGAGATGCAAGACAGACCTTGGGGATTCTTTGGCTTACTTTGATTTCTCTCACATAAAAGATCCTTGTAAGGTGTTTCCGGTCAAGGTTCCTGTAGGGCTCATGGACTCTGGTGCCTCTACTACCAGTGTTAGGAGTGATCACCATCTGAAACAATGTTCTGCAGAAGCTGATGTTCTGATTGGAAGAACAATAGTATCTGACTCTCTTCTGTCTTCAGATTCGAAGGGCCACACCAAAGGAGATGCTACTTTAACAAATGTTTCTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCATTAATAGAGTTGAAGATCACAGAGAAAGCTTGGCGGCCACTTTTGACATACCACTTGATTTTATTATCGACACATGCCTTCTGCAGGAAATCATGCTCCAATATAAGTATGTCAGCAAGTTAACCATTAAGTTGCTGGAAGAAGGATTTGATTTGCAAGAACATTTGCTGGCTCTGCGACGATACCACTTCATGGAATTAGCAGACTGGGCAGATTTGTTTATTATGTCCCTTTGGCATCATAAATGGAGTATTACGCAGGCAGATCATAGACTTTCCGAAATTCAAAGTTTTCTTGAGTCATCAGTTCAGAGGTCATCATGTGAACGTGATCATAATAAGGACAGGTTATTTGTGTACCTGAAAGGACATGATGCAGTGCCTCTTTCAGCATCTGCTATTGGAGTCCATTCCTTCAACTTTCTAGGTTTGGGATATCGAGTGGACTGGCCCATCAGCATTGTTTTGACTCCTGGTGCATTGAAAATATATGCCGAGATATTCAGTTTCTTGATACAAGTGAAACTTGCTCTGTTTTCATTGACTGACGTGTGGTGCCAATTGAAGGATCTGGTCCAGTTGATTAGTCGGAATAACCACTCTGAGCAACATGAAAAGGAAGTGAGTCATTTCAATGCAATGGTGAAAATGAGGTTTCTATATTCACTTAAGCATAAGGTCAAAGATATGATGGATCTTCAGTCAGTGCACATGGCATATCTCTCAGATTCACTTCACATGTCAGGTCTTGCGAGGATTGGGGATTGGGACTCTCCATTTTGTGCTTCTTTTCCACTTCTTTCTGGACTTTCCAACTGTGATAGTGTTTCAATTGTCAATATGTTTGTTGATTCTTTCTCATCAGAAAACGCGCACCAGGTGTGGATTTTATGTTTCCTCTCTGATGAAACAAGACCTATAGCTTGCATCATTGAGAGCATTCTGCAGTGTGCTCTGGACTTCAGGTCTTGTCTCACTGGGGAAGTATGGAATGCAGGAACAGGTCAAGGGAATTTAATTGCAAGACACTCTGGAATCAATATATCCCAGGTTCTTTCCATAAAGGAAACGTTTGACAAAAATATGAAAGAATTGCACTTGTGTTACCTCAGATCACCTAAACATGGCGAGTTTGGACTCTCTCACTTCTGGGAATACCTGAACTACAACAAGTATTACTCAGATGCTGCTTCCAAAGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

1218

Amino Acids

136.71

Weight (kDa)

5.56

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	63 - 391	3.1e-17	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	869 - 1060	3.5e-28	Gamma tubulin complex component C-terminal
GCP_C_terminal	PF04130	1115 - 1210	4.2e-08	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	953
AccB1I	GGYRCC	2 cut(s)	2249, 3006
AccB7I	CCANNNNNTGG	1 cut(s)	2644
AccI	GTMKAC	1 cut(s)	799
AccII	CGCG	1 cut(s)	3323
AciI	CCGC	6 cut(s)	102, 178, 482, 550, 578, 2486
AclI	AACGTT	1 cut(s)	3521
AclWI	GGATC	9 cut(s)	50, 251, 881, 980, 1675, 1927, 2192, 3027, 3153
AcoI	YGGCCR	3 cut(s)	103, 1808, 2487
AcsI	RAATTY	4 cut(s)	380, 911, 2733, 3463
AcuI	CTGAAG	5 cut(s)	1560, 1889, 2337, 3134, 3397
AcyI	GRCGYC	1 cut(s)	716
AdeI	CACNNNGTG	1 cut(s)	3331
AfaI	GTAC	7 cut(s)	906, 928, 1186, 1471, 1856, 2023, 2810
AfiI	CCNNNNNNNGG	6 cut(s)	944, 2268, 2536, 2644, 3016, 3575
AflII	CTTAAG	1 cut(s)	3119
AflIII	ACRYGT	4 cut(s)	507, 929, 3000, 3189
AhdI	GACNNNNNGTC	1 cut(s)	3415
AjiI	CACGTC	2 cut(s)	1877, 3001
AjnI	CCWGG	4 cut(s)	2131, 2923, 3327, 3498
AjuI	GAANNNNNNNTTGG	2 cut(s)	1974, 2006
AloI	GAACNNNNNNTCC	2 cut(s)	1083, 1115
Alw21I	GWGCWC	2 cut(s)	3162, 3406
Alw26I	GTCTC	4 cut(s)	163, 593, 1470, 3428
Alw44I	GTGCAC	1 cut(s)	3158
AlwI	GGATC	9 cut(s)	50, 251, 881, 980, 1675, 1927, 2192, 3027, 3153
AlwNI	CAGNNNCTG	5 cut(s)	43, 1153, 2306, 2846, 3638
AoxI	GGCC	9 cut(s)	103, 865, 1302, 1808, 2013, 2129, 2365, 2487, 2900
ApaLI	GTGCAC	1 cut(s)	3158
ApeKI	GCWGC	5 cut(s)	242, 348, 1150, 1153, 3638
ApoI	RAATTY	4 cut(s)	380, 911, 2733, 3463
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 2786, 2818
AseI	ATTAAT	1 cut(s)	2454
Asp700I	GAANNNNTTC	3 cut(s)	1014, 1118, 1357
AspLEI	GCGC	3 cut(s)	446, 555, 3325
AspS9I	GGNCC	4 cut(s)	270, 2365, 2901, 3025
AsuHPI	GGTGA	6 cut(s)	790, 1912, 2108, 2270, 3106, 3558
AsuII	TTCGAA	1 cut(s)	2360
AvaII	GGWCC	2 cut(s)	270, 3025
BaeGI	GKGCMC	1 cut(s)	3162
BaeI	ACNNNNGTAYC	4 cut(s)	775, 808, 2316, 2349
BanI	GGYRCC	2 cut(s)	2249, 3006
BanII	GRGCYC	2 cut(s)	569, 2238
BarI	GAAGNNNNNNTAC	2 cut(s)	2045, 2077
BbsI	GAAGAC	3 cut(s)	297, 711, 2343
Bbv12I	GWGCWC	2 cut(s)	3162, 3406
BbvI	GCAGC	5 cut(s)	229, 335, 1140, 1162, 3625
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	4 cut(s)	2133, 2925, 3329, 3500
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	2275, 2782
BcoDI	GTCTC	4 cut(s)	163, 593, 1470, 3428
BfaI	CTAG	3 cut(s)	1163, 2127, 2876
BfmI	CTRYAG	8 cut(s)	769, 1494, 1671, 2229, 2298, 2534, 3369, 3395
BfoI	RGCGCY	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	3119
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1151, 1154, 2487, 3639
BlsI	GCNGC	9 cut(s)	104, 180, 244, 350, 552, 1152, 1155, 2488, 3640
Bme1390I	CCNGG	4 cut(s)	2133, 2925, 3329, 3500
Bme18I	GGWCC	2 cut(s)	270, 3025
BmeRI	GACNNNNNGTC	1 cut(s)	3415
BmgBI	CACGTC	2 cut(s)	1877, 3001
BmgT120I	GGNCC	4 cut(s)	270, 2365, 2901, 3025
BmiI	GGNNCC	4 cut(s)	285, 2226, 2251, 3008
BmrFI	CCNGG	4 cut(s)	2133, 2925, 3329, 3500
BmrI	ACTGGG	3 cut(s)	1364, 2668, 3438
BmuI	ACTGGG	3 cut(s)	1364, 2668, 3438
BpiI	GAAGAC	3 cut(s)	297, 711, 2343
BpmI	CTGGAG	4 cut(s)	20, 414, 1255, 2154
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	2360
BpuEI	CTTGAG	1 cut(s)	2768
BsaAI	YACGTR	1 cut(s)	791
BsaBI	GATNNNNATC	1 cut(s)	2280
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	5 cut(s)	162, 1305, 1663, 2155, 3498
BsaWI	WCCGGW	1 cut(s)	2215
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 1083, 1113
Bsc4I	CCNNNNNNNGG	6 cut(s)	944, 2268, 2536, 2644, 3016, 3575
Bse3DI	GCAATG	3 cut(s)	29, 59, 3096
Bse8I	GATNNNNATC	1 cut(s)	2280
BseBI	CCWGG	4 cut(s)	2133, 2925, 3329, 3500
BseDI	CCNNGG	5 cut(s)	162, 1305, 1663, 2155, 3498
BseGI	GGATG	6 cut(s)	23, 87, 590, 1365, 1393, 1777
BseJI	GATNNNNATC	1 cut(s)	2280
BseLI	CCNNNNNNNGG	6 cut(s)	944, 2268, 2536, 2644, 3016, 3575
BseMI	GCAATG	3 cut(s)	29, 59, 3096
BseRI	GAGGAG	1 cut(s)	1010
BseSI	GKGCMC	1 cut(s)	3162
BseXI	GCAGC	5 cut(s)	229, 335, 1140, 1162, 3625
Bsh1236I	CGCG	1 cut(s)	3323
BshFI	GGCC	9 cut(s)	105, 867, 1304, 1810, 2015, 2131, 2367, 2489, 2902
BshNI	GGYRCC	2 cut(s)	2249, 3006
BsiHKAI	GWGCWC	2 cut(s)	3162, 3406
BsiSI	CCGG	3 cut(s)	260, 1811, 2216
BslFI	GGGAC	3 cut(s)	1364, 2665, 3233
BslI	CCNNNNNNNGG	6 cut(s)	944, 2268, 2536, 2644, 3016, 3575
BsmAI	GTCTC	4 cut(s)	163, 593, 1470, 3428
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	3 cut(s)	1364, 2665, 3233
BsmI	GAATGC	4 cut(s)	196, 1732, 3390, 3448
BsnI	GGCC	9 cut(s)	105, 867, 1304, 1810, 2015, 2131, 2367, 2489, 2902
Bsp119I	TTCGAA	1 cut(s)	2360
Bsp1286I	GDGCHC	4 cut(s)	569, 2238, 3162, 3406
Bsp19I	CCATGG	2 cut(s)	1305, 1663
BspACI	CCGC	6 cut(s)	102, 178, 482, 550, 578, 2486
BspANI	GGCC	9 cut(s)	105, 867, 1304, 1810, 2015, 2131, 2367, 2489, 2902
BspFNI	CGCG	1 cut(s)	3323
BspLI	GGNNCC	4 cut(s)	285, 2226, 2251, 3008
BspMAI	CTGCAG	5 cut(s)	1498, 1675, 2302, 2538, 3399
BspPI	GGATC	9 cut(s)	50, 251, 881, 980, 1675, 1927, 2192, 3027, 3153
BspQI	GCTCTTC	2 cut(s)	562, 1536
BspT104I	TTCGAA	1 cut(s)	2360
BspT107I	GGYRCC	2 cut(s)	2249, 3006
BspTI	CTTAAG	1 cut(s)	3119
BsrDI	GCAATG	3 cut(s)	29, 59, 3096
BssECI	CCNNGG	5 cut(s)	162, 1305, 1663, 2155, 3498
BssNAI	GTATAC	1 cut(s)	800
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	3 cut(s)	1305, 1663, 2155
Bst1107I	GTATAC	1 cut(s)	800
Bst2UI	CCWGG	4 cut(s)	2133, 2925, 3329, 3500
Bst4CI	ACNGT	7 cut(s)	157, 441, 596, 1394, 2049, 2449, 3269
Bst6I	CTCTTC	3 cut(s)	562, 1536, 2349
BstACI	GRCGYC	1 cut(s)	716
BstAFI	CTTAAG	1 cut(s)	3119
BstBAI	YACGTR	1 cut(s)	791
BstBI	TTCGAA	1 cut(s)	2360
BstC8I	GCNNGC	5 cut(s)	183, 569, 2622, 2712, 3376
BstDSI	CCRYGG	2 cut(s)	1305, 1663
BstEII	GGTNACC	1 cut(s)	778
BstENI	CCTNNNNNAGG	1 cut(s)	2534
BstF5I	GGATG	6 cut(s)	23, 87, 590, 1365, 1393, 1777
BstFNI	CGCG	1 cut(s)	3323
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	3 cut(s)	446, 555, 3325
BstMAI	GTCTC	4 cut(s)	163, 593, 1470, 3428
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 634, 890, 2626, 2660, 3647
BstNI	CCWGG	4 cut(s)	2133, 2925, 3329, 3500
BstNSI	RCATGY	4 cut(s)	511, 933, 2529, 3193
BstPI	GGTNACC	1 cut(s)	778
BstSCI	CCNGG	4 cut(s)	2131, 2923, 3327, 3498
BstSFI	CTRYAG	8 cut(s)	769, 1494, 1671, 2229, 2298, 2534, 3369, 3395
BstSLI	GKGCMC	1 cut(s)	3162
BstUI	CGCG	1 cut(s)	3323
BstV1I	GCAGC	5 cut(s)	229, 335, 1140, 1162, 3625
BstV2I	GAAGAC	3 cut(s)	297, 711, 2343
BstX2I	RGATCY	5 cut(s)	55, 1667, 2197, 3019, 3145
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	5 cut(s)	55, 1667, 2197, 3019, 3145
BstZ17I	GTATAC	1 cut(s)	800
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	9 cut(s)	105, 867, 1304, 1810, 2015, 2131, 2367, 2489, 2902
BtgI	CCRYGG	2 cut(s)	1305, 1663
BtgZI	GCGATG	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	1877, 3001
BtsCI	GGATG	6 cut(s)	23, 87, 590, 1365, 1393, 1777
BtsI	GCAGTG	5 cut(s)	194, 1325, 1491, 2835, 3404
Cac8I	GCNNGC	5 cut(s)	183, 569, 2622, 2712, 3376
CaiI	CAGNNNCTG	5 cut(s)	43, 1153, 2306, 2846, 3638
CfoI	GCGC	3 cut(s)	446, 555, 3325
Cfr13I	GGNCC	4 cut(s)	270, 2365, 2901, 3025
CseI	GACGC	1 cut(s)	705
CsiI	ACCWGGT	1 cut(s)	3327
Csp6I	GTAC	7 cut(s)	905, 927, 1185, 1470, 1855, 2022, 2809
CspCI	CAANNNNNGTGG	2 cut(s)	1419, 1454
CviQI	GTAC	7 cut(s)	905, 927, 1185, 1470, 1855, 2022, 2809
DraIII	CACNNNGTG	1 cut(s)	3331
DriI	GACNNNNNGTC	1 cut(s)	3415
EaeI	YGGCCR	3 cut(s)	103, 1808, 2487
Eam1104I	CTCTTC	3 cut(s)	562, 1536, 2349
Eam1105I	GACNNNNNGTC	1 cut(s)	3415
EarI	CTCTTC	3 cut(s)	562, 1536, 2349
Eco130I	CCWWGG	3 cut(s)	1305, 1663, 2155
Eco147I	AGGCCT	1 cut(s)	2131
Eco24I	GRGCYC	2 cut(s)	569, 2238
Eco32I	GATATC	1 cut(s)	2888
Eco47I	GGWCC	2 cut(s)	270, 3025
Eco57I	CTGAAG	5 cut(s)	1560, 1889, 2337, 3134, 3397
Eco91I	GGTNACC	1 cut(s)	778
EcoNI	CCTNNNNNAGG	1 cut(s)	2534
EcoO109I	RGGNCCY	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	778
EcoRII	CCWGG	4 cut(s)	2131, 2923, 3327, 3498
EcoRV	GATATC	1 cut(s)	2888
EcoT14I	CCWWGG	3 cut(s)	1305, 1663, 2155
EcoT22I	ATGCAT	3 cut(s)	535, 1270, 1504
EcoT38I	GRGCYC	2 cut(s)	569, 2238
ErhI	CCWWGG	3 cut(s)	1305, 1663, 2155
Esp3I	CGTCTC	1 cut(s)	163
FalI	AAGNNNNNCTT	4 cut(s)	1106, 1138, 2961, 2993
FaqI	GGGAC	3 cut(s)	1364, 2665, 3233
FauNDI	CATATG	1 cut(s)	680
FbaI	TGATCA	2 cut(s)	2275, 2782
FblI	GTMKAC	1 cut(s)	799
Fnu4HI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1151, 1154, 2487, 3639
FokI	GGATG	6 cut(s)	10, 74, 597, 1352, 1400, 1784
FriOI	GRGCYC	2 cut(s)	569, 2238
Fsp4HI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1151, 1154, 2487, 3639
FspBI	CTAG	3 cut(s)	1163, 2127, 2876
GlaI	GCGC	3 cut(s)	445, 554, 3324
GluI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1151, 1154, 2487, 3639
GsuI	CTGGAG	4 cut(s)	20, 414, 1255, 2154
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	9 cut(s)	105, 867, 1304, 1810, 2015, 2131, 2367, 2489, 2902
HapII	CCGG	3 cut(s)	260, 1811, 2216
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	3 cut(s)	446, 555, 3325
Hin1I	GRCGYC	1 cut(s)	716
Hin6I	GCGC	3 cut(s)	444, 553, 3323
HinP1I	GCGC	3 cut(s)	444, 553, 3323
HincII	GTYRAC	2 cut(s)	2097, 2574
HindII	GTYRAC	2 cut(s)	2097, 2574
HindIII	AAGCTT	3 cut(s)	233, 1621, 2479
HpaI	GTTAAC	1 cut(s)	2574
HpaII	CCGG	3 cut(s)	260, 1811, 2216
HphI	GGTGA	6 cut(s)	790, 1912, 2108, 2270, 3106, 3558
Hpy188III	TCNNGA	8 cut(s)	37, 848, 1123, 2747, 2962, 3255, 3407, 3483
Hpy99I	CGWCG	3 cut(s)	389, 1881, 2634
HpyCH4III	ACNGT	7 cut(s)	157, 441, 596, 1394, 2049, 2449, 3269
HpyCH4IV	ACGT	7 cut(s)	790, 1280, 1584, 1876, 2779, 3000, 3521
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 634, 890, 2626, 2660, 3647
HpySE526I	ACGT	7 cut(s)	790, 1280, 1584, 1876, 2779, 3000, 3521
Hsp92I	GRCGYC	1 cut(s)	716
HspAI	GCGC	3 cut(s)	444, 553, 3323
Ksp22I	TGATCA	2 cut(s)	2275, 2782
KspAI	GTTAAC	1 cut(s)	2574
LguI	GCTCTTC	2 cut(s)	562, 1536
LmnI	GCTCC	8 cut(s)	39, 257, 433, 451, 625, 1408, 1532, 2553
Lsp1109I	GCAGC	5 cut(s)	229, 335, 1140, 1162, 3625
MabI	ACCWGGT	1 cut(s)	3327
MaeI	CTAG	3 cut(s)	1163, 2127, 2876
MaeII	ACGT	7 cut(s)	790, 1280, 1584, 1876, 2779, 3000, 3521
MaeIII	GTNAC	8 cut(s)	503, 732, 778, 806, 1487, 1872, 2441, 3554
MfeI	CAATTG	3 cut(s)	1252, 3011, 3282
MflI	RGATCY	5 cut(s)	55, 1667, 2197, 3019, 3145
MhlI	GDGCHC	4 cut(s)	569, 2238, 3162, 3406
MmeI	TCCRAC	5 cut(s)	95, 143, 603, 3020, 3288
Mph1103I	ATGCAT	3 cut(s)	535, 1270, 1504
MroXI	GAANNNNTTC	3 cut(s)	1014, 1118, 1357
MslI	CAYNNNNRTG	3 cut(s)	1212, 1516, 3084
MspA1I	CMGCKG	1 cut(s)	1153
MspCI	CTTAAG	1 cut(s)	3119
MspI	CCGG	3 cut(s)	260, 1811, 2216
MspR9I	CCNGG	4 cut(s)	2133, 2925, 3329, 3500
MunI	CAATTG	3 cut(s)	1252, 3011, 3282
Mva1269I	GAATGC	4 cut(s)	196, 1732, 3390, 3448
MvaI	CCWGG	4 cut(s)	2133, 2925, 3329, 3500
MvnI	CGCG	1 cut(s)	3323
MwoI	GCNNNNNNNGC	6 cut(s)	191, 634, 890, 2626, 2660, 3647
NcoI	CCATGG	2 cut(s)	1305, 1663
NdeI	CATATG	1 cut(s)	680
NlaIV	GGNNCC	4 cut(s)	285, 2226, 2251, 3008
NmeAIII	GCCGAG	2 cut(s)	692, 2971
NmuCI	GTSAC	3 cut(s)	778, 1872, 2441
NsiI	ATGCAT	3 cut(s)	535, 1270, 1504
NspI	RCATGY	4 cut(s)	511, 933, 2529, 3193
NspV	TTCGAA	1 cut(s)	2360
PceI	AGGCCT	1 cut(s)	2131
PciI	ACATGT	3 cut(s)	507, 929, 3189
PciSI	GCTCTTC	2 cut(s)	562, 1536
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 381
PctI	GAATGC	4 cut(s)	196, 1732, 3390, 3448
PdmI	GAANNNNTTC	3 cut(s)	1014, 1118, 1357
PflFI	GACNNNGTC	1 cut(s)	2447
PflMI	CCANNNNNTGG	1 cut(s)	2644
PkrI	GCNGC	9 cut(s)	104, 180, 244, 350, 552, 1152, 1155, 2488, 3640
Ppu21I	YACGTR	1 cut(s)	791
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	3 cut(s)	507, 929, 3189
PshBI	ATTAAT	1 cut(s)	2454
PsiI	TTATAA	1 cut(s)	953
Psp1406I	AACGTT	1 cut(s)	3521
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	2131, 2923, 3327, 3498
PspEI	GGTNACC	1 cut(s)	778
PspGI	CCWGG	4 cut(s)	2131, 2923, 3327, 3498
PspN4I	GGNNCC	4 cut(s)	285, 2226, 2251, 3008
PspPI	GGNCC	4 cut(s)	270, 2365, 2901, 3025
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	5 cut(s)	1498, 1675, 2302, 2538, 3399
PstNI	CAGNNNCTG	5 cut(s)	43, 1153, 2306, 2846, 3638
PsuI	RGATCY	5 cut(s)	55, 1667, 2197, 3019, 3145
PsyI	GACNNNGTC	1 cut(s)	2447
PvuII	CAGCTG	1 cut(s)	1153
RsaI	GTAC	7 cut(s)	906, 928, 1186, 1471, 1856, 2023, 2810
RsaNI	GTAC	7 cut(s)	905, 927, 1185, 1470, 1855, 2022, 2809
RseI	CAYNNNNRTG	3 cut(s)	1212, 1516, 3084
SapI	GCTCTTC	2 cut(s)	562, 1536
SatI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1151, 1154, 2487, 3639
Sau96I	GGNCC	4 cut(s)	270, 2365, 2901, 3025
ScrFI	CCNGG	4 cut(s)	2133, 2925, 3329, 3500
SduI	GDGCHC	4 cut(s)	569, 2238, 3162, 3406
SexAI	ACCWGGT	1 cut(s)	3327
SfcI	CTRYAG	8 cut(s)	769, 1494, 1671, 2229, 2298, 2534, 3369, 3395
SfuI	TTCGAA	1 cut(s)	2360
SinI	GGWCC	2 cut(s)	270, 3025
SmiMI	CAYNNNNRTG	3 cut(s)	1212, 1516, 3084
SmlI	CTYRAG	2 cut(s)	2747, 3119
SmoI	CTYRAG	2 cut(s)	2747, 3119
SseBI	AGGCCT	1 cut(s)	2131
SsiI	CCGC	6 cut(s)	102, 178, 482, 550, 578, 2486
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	3 cut(s)	1163, 2127, 2876
StuI	AGGCCT	1 cut(s)	2131
StyD4I	CCNGG	4 cut(s)	2131, 2923, 3327, 3498
StyI	CCWWGG	3 cut(s)	1305, 1663, 2155
TaaI	ACNGT	7 cut(s)	157, 441, 596, 1394, 2049, 2449, 3269
TaiI	ACGT	7 cut(s)	793, 1283, 1587, 1879, 2782, 3003, 3524
TaqI	TCGA	9 cut(s)	51, 387, 418, 838, 1557, 1879, 2360, 2520, 2890
TatI	WGTACW	5 cut(s)	904, 1184, 1469, 1854, 2021
TauI	GCSGC	4 cut(s)	105, 181, 553, 2489
TseFI	GTSAC	3 cut(s)	778, 1872, 2441
TseI	GCWGC	5 cut(s)	242, 348, 1150, 1153, 3638
Tsp45I	GTSAC	3 cut(s)	778, 1872, 2441
TspGWI	ACGGA	2 cut(s)	438, 1898
Tth111I	GACNNNGTC	1 cut(s)	2447
Van91I	CCANNNNNTGG	1 cut(s)	2644
Vha464I	CTTAAG	1 cut(s)	3119
VneI	GTGCAC	1 cut(s)	3158
VpaK11BI	GGWCC	2 cut(s)	270, 3025
VspI	ATTAAT	1 cut(s)	2454
XagI	CCTNNNNNAGG	1 cut(s)	2534
XapI	RAATTY	4 cut(s)	380, 911, 2733, 3463
XceI	RCATGY	4 cut(s)	511, 933, 2529, 3193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	406, 2584
XmiI	GTMKAC	1 cut(s)	799
XmnI	GAANNNNTTC	3 cut(s)	1014, 1118, 1357
XspI	CTAG	3 cut(s)	1163, 2127, 2876
Zsp2I	ATGCAT	3 cut(s)	535, 1270, 1504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.