MD03G1162300.v1.1

microtubule nucleation by microtubule organizing center

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
Physical Location & Seq
Reverse (-)
19660558 .. 19671849
11292 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1162300.v1.1.491

Sequence Viewer

Length: 1434 bp
ATGGATTCTGCCTCAAAGGTGAATGAGAGAATCATAGGGGCCTTAAAGGAAGCTACATTTAGAAAAAGAATTGAGACTAATAATTCTTTAATTGAAGAAGCCTCTGCAAAGAACCAACCTCTAAATGCAACATATACTTCTTCAGATTTATTGACATTACAACATTTGAAGGTTAACTCCCATAACAATTTTCTGAGCATGATCCCAATTCTGACAAAAACTAACATAATTCACATGATAACCAAGCCAGGAGAGAGAGACAGAACAGACTTTGGGGGTGCTTTACCTTACTTTGACTTTTCTTTCATAAAAGACCCTTTTAAGGTGTGTCTCCAAAAGCCACCTGCAGGGCTTTTGGACTCCAGTGCCTCAGCTTCCAGTGTCTGGAGGGATCACCTTGGAAAACAATGTTCTGGTGGAGATAATGTCTTGATTGATAAGACCAATGTATCTGATGTTCTTCCATATTCAGACTCAAAGGACCACAACCAGGCAGATGCAAATTTAACAAATGTTACTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCGTTAGTAGAGTTGAAGATCACAGACAAGGCACGGGAGACAGTTTTGAGATACCACTTGATTTTATTATTGACAAATGCCTTCTGCAAGATGGTAACCTTAAACATGCTAGATATAAGTATGTCAGCAAGCTAACTATTAAGTTGCTTGAAGAAGGATTTGAATTGCAAGAACATTTACTGGCTCTACGGCGATACCACTTTATGGAACTAGCGGACTGGGCAGATTTGTTTATTATGTCTCTTTGGCAGCATAAATGGTGCGTTACAGAGGCAGATCATAGACTTTCAGAAATTCAAGGTTTCCTTGAGTCATCAGTTCAGAGGTCATCATGTGAACGCGACCCTCATAAGGACAGGTTATTTGTATACATGAAAGGACATGATGCAATGACTCTTTCTGCATCTGTTATTGATGTCCATTCCTTCAACTTTCTTGGTTTGGGTTACCGAGTGGACTGGCCCATAAGTATTGTTTTGAGTCCTGTGAAGCTTGCTATATTCTCATTGATTAATGTATGGCGCCCATTAAAGGATTTGGTATGCTCAATTAGTCAGGATATTGACTCTGAACAATATGATATGGGAGCAAGCCATTTTAATGCATTAGTGAAGATGAGGCACCAGGTCAATCATTTTGTATCTACATTACAGCAATATGTGGAATCACAGTTATCACATGTTTTATGGTGCAGGTTTCTGTACTCACTTAAACATCAGGTCAAAGATACGATGGATCTTCAGTCTGTACATATGAAATATTTAACAGATTCGCTTGACATTAAACAACCGAGAAAAAAGTTTGCACCAAGTGTGTACTTGCTGTCGGCTGCAAGATTTCTGGAAGCAATGCACAAGAAACTACACTGA

Protein Analysis

478

Amino Acids

54.45

Weight (kDa)

6.74

Isoelectric Point (pI)

38.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCP_C_terminal PF04130 244 - 447 5.6e-34 Gamma tubulin complex component C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 352
Acc36I ACCTGC 2 cut(s) 352, 1248
AccB1I GGYRCC 2 cut(s) 1086, 1185
AccB7I CCANNNNNTGG 2 cut(s) 384, 769
AccI GTMKAC 1 cut(s) 933
AccII CGCG 1 cut(s) 906
AciI CCGC 1 cut(s) 779
AclWI GGATC 3 cut(s) 196, 399, 1308
AcsI RAATTY 2 cut(s) 502, 858
AcuI CTGAAG 2 cut(s) 126, 1289
AcyI GRCGYC 1 cut(s) 1087
AdeI CACNNNGTG 1 cut(s) 1376
AfaI GTAC 3 cut(s) 1268, 1314, 1382
AfiI CCNNNNNNNGG 7 cut(s) 322, 347, 384, 490, 769, 916, 1096
AflIII ACRYGT 1 cut(s) 1243
AgsI TTSAA 7 cut(s) 95, 169, 581, 716, 728, 863, 994
AjnI CCWGG 3 cut(s) 247, 489, 1188
AluBI AGCT 4 cut(s) 53, 374, 697, 1057
AluI AGCT 4 cut(s) 53, 374, 697, 1057
Alw26I GTCTC 5 cut(s) 68, 252, 335, 597, 810
AlwI GGATC 3 cut(s) 196, 399, 1308
AlwNI CAGNNNCTG 1 cut(s) 384
AoxI GGCC 2 cut(s) 39, 1025
ApeKI GCWGC 2 cut(s) 814, 1394
ApoI RAATTY 2 cut(s) 502, 858
ArsI GACNNNNNNTTYG 2 cut(s) 911, 943
AseI ATTAAT 1 cut(s) 1077
AspLEI GCGC 1 cut(s) 1089
AspS9I GGNCC 3 cut(s) 39, 481, 1026
AsuHPI GGTGA 2 cut(s) 31, 386
AvaII GGWCC 1 cut(s) 481
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BanI GGYRCC 2 cut(s) 1086, 1185
BbvCI CCTCAGC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 826, 1381
BccI CCATC 2 cut(s) 650, 1291
BceAI ACGGC 1 cut(s) 770
BciT130I CCWGG 3 cut(s) 249, 491, 1190
BcoDI GTCTC 5 cut(s) 68, 252, 335, 597, 810
BfaI CTAG 2 cut(s) 675, 776
BfmI CTRYAG 1 cut(s) 345
BfoI RGCGCY 1 cut(s) 1090
BfuAI ACCTGC 2 cut(s) 352, 1248
BisI GCNGC 2 cut(s) 815, 1395
BlsI GCNGC 2 cut(s) 816, 1396
Bme1390I CCNGG 3 cut(s) 249, 491, 1190
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 3 cut(s) 39, 481, 1026
BmiI GGNNCC 3 cut(s) 40, 1088, 1187
BmrFI CCNGG 3 cut(s) 249, 491, 1190
BmrI ACTGGG 1 cut(s) 793
BmsI GCATC 3 cut(s) 487, 940, 977
BmuI ACTGGG 1 cut(s) 793
BpmI CTGGAG 2 cut(s) 346, 406
Bpu10I CCTNAGC 1 cut(s) 370
BpuEI CTTGAG 1 cut(s) 893
BsaHI GRCGYC 1 cut(s) 1087
BsaJI CCNNGG 1 cut(s) 397
BsaXI ACNNNNNCTCC 2 cut(s) 411, 441
Bsc4I CCNNNNNNNGG 7 cut(s) 322, 347, 384, 490, 769, 916, 1096
Bse1I ACTGG 6 cut(s) 363, 378, 523, 750, 788, 1028
Bse3DI GCAATG 2 cut(s) 960, 1419
BseBI CCWGG 3 cut(s) 249, 491, 1190
BseDI CCNNGG 1 cut(s) 397
BseLI CCNNNNNNNGG 7 cut(s) 322, 347, 384, 490, 769, 916, 1096
BseMI GCAATG 2 cut(s) 960, 1419
BseMII CTCAG 2 cut(s) 185, 384
BseNI ACTGG 6 cut(s) 363, 378, 523, 750, 788, 1028
BseXI GCAGC 2 cut(s) 826, 1381
BsgI GTGCAG 1 cut(s) 1276
Bsh1236I CGCG 1 cut(s) 906
BshFI GGCC 2 cut(s) 41, 1027
BshNI GGYRCC 2 cut(s) 1086, 1185
BslI CCNNNNNNNGG 7 cut(s) 322, 347, 384, 490, 769, 916, 1096
BsmAI GTCTC 5 cut(s) 68, 252, 335, 597, 810
BsnI GGCC 2 cut(s) 41, 1027
Bsp1407I TGTACA 1 cut(s) 1312
Bsp143I GATC 5 cut(s) 201, 391, 583, 841, 1300
BspACI CCGC 1 cut(s) 779
BspANI GGCC 2 cut(s) 41, 1027
BspCNI CTCAG 2 cut(s) 186, 383
BspFNI CGCG 1 cut(s) 906
BspLI GGNNCC 3 cut(s) 40, 1088, 1187
BspMAI CTGCAG 1 cut(s) 349
BspMI ACCTGC 2 cut(s) 352, 1248
BspPI GGATC 3 cut(s) 196, 399, 1308
BspT107I GGYRCC 2 cut(s) 1086, 1185
BsrDI GCAATG 2 cut(s) 960, 1419
BsrGI TGTACA 1 cut(s) 1312
BsrI ACTGG 6 cut(s) 363, 378, 523, 750, 788, 1028
BssECI CCNNGG 1 cut(s) 397
BssMI GATC 5 cut(s) 201, 391, 583, 841, 1300
BssNAI GTATAC 1 cut(s) 934
BssNI GRCGYC 1 cut(s) 1087
BssT1I CCWWGG 1 cut(s) 397
Bst1107I GTATAC 1 cut(s) 934
Bst2UI CCWGG 3 cut(s) 249, 491, 1190
Bst4CI ACNGT 3 cut(s) 565, 608, 1236
BstACI GRCGYC 1 cut(s) 1087
BstAUI TGTACA 1 cut(s) 1312
BstC8I GCNNGC 3 cut(s) 695, 1059, 1156
BstDEI CTNAG 2 cut(s) 194, 370
BstEII GGTNACC 2 cut(s) 659, 1010
BstFNI CGCG 1 cut(s) 906
BstH2I RGCGCY 1 cut(s) 1090
BstHHI GCGC 1 cut(s) 1089
BstKTI GATC 5 cut(s) 204, 394, 586, 844, 1303
BstMAI GTCTC 5 cut(s) 68, 252, 335, 597, 810
BstMBI GATC 5 cut(s) 201, 391, 583, 841, 1300
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 3 cut(s) 249, 491, 1190
BstNSI RCATGY 2 cut(s) 674, 1247
BstPI GGTNACC 2 cut(s) 659, 1010
BstSCI CCNGG 3 cut(s) 247, 489, 1188
BstSFI CTRYAG 1 cut(s) 345
BstUI CGCG 1 cut(s) 906
BstV1I GCAGC 2 cut(s) 826, 1381
BstX2I RGATCY 1 cut(s) 1300
BstYI RGATCY 1 cut(s) 1300
BstZ17I GTATAC 1 cut(s) 934
BsuRI GGCC 2 cut(s) 41, 1027
BtsIMutI CAGTG 4 cut(s) 370, 385, 561, 1429
BveI ACCTGC 2 cut(s) 352, 1248
Cac8I GCNNGC 3 cut(s) 695, 1059, 1156
CaiI CAGNNNCTG 1 cut(s) 384
CfoI GCGC 1 cut(s) 1089
Cfr13I GGNCC 3 cut(s) 39, 481, 1026
CsiI ACCWGGT 1 cut(s) 1188
Csp6I GTAC 3 cut(s) 1267, 1313, 1381
CviAII CATG 7 cut(s) 199, 235, 671, 897, 937, 947, 1244
CviQI GTAC 3 cut(s) 1267, 1313, 1381
DdeI CTNAG 2 cut(s) 194, 370
DinI GGCGCC 1 cut(s) 1088
DpnI GATC 5 cut(s) 203, 393, 585, 843, 1302
DpnII GATC 5 cut(s) 201, 391, 583, 841, 1300
DraIII CACNNNGTG 1 cut(s) 1376
Eco130I CCWWGG 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 126, 1289
Eco91I GGTNACC 2 cut(s) 659, 1010
EcoO109I RGGNCCY 1 cut(s) 39
EcoO65I GGTNACC 2 cut(s) 659, 1010
EcoRII CCWGG 3 cut(s) 247, 489, 1188
EcoT14I CCWWGG 1 cut(s) 397
EcoT22I ATGCAT 1 cut(s) 1171
EgeI GGCGCC 1 cut(s) 1088
EheI GGCGCC 1 cut(s) 1088
ErhI CCWWGG 1 cut(s) 397
FaeI CATG 7 cut(s) 202, 238, 674, 900, 940, 950, 1247
FalI AAGNNNNNCTT 2 cut(s) 855, 887
FatI CATG 7 cut(s) 198, 234, 670, 896, 936, 946, 1243
FauNDI CATATG 1 cut(s) 1317
FblI GTMKAC 1 cut(s) 933
Fnu4HI GCNGC 2 cut(s) 815, 1395
Fsp4HI GCNGC 2 cut(s) 815, 1395
FspBI CTAG 2 cut(s) 675, 776
GlaI GCGC 1 cut(s) 1088
GluI GCNGC 2 cut(s) 815, 1395
GsuI CTGGAG 2 cut(s) 346, 406
HaeII RGCGCY 1 cut(s) 1090
HaeIII GGCC 2 cut(s) 41, 1027
HhaI GCGC 1 cut(s) 1089
Hin1I GRCGYC 1 cut(s) 1087
Hin1II CATG 7 cut(s) 202, 238, 674, 900, 940, 950, 1247
Hin6I GCGC 1 cut(s) 1087
HinP1I GCGC 1 cut(s) 1087
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HindIII AAGCTT 1 cut(s) 1055
HpaI GTTAAC 1 cut(s) 175
HphI GGTGA 2 cut(s) 31, 386
Hpy166II GTNNAC 5 cut(s) 175, 902, 934, 1021, 1381
Hpy188I TCNGA 8 cut(s) 145, 195, 213, 454, 472, 856, 888, 1135
Hpy188III TCNNGA 4 cut(s) 385, 430, 1121, 1406
Hpy8I GTNNAC 5 cut(s) 175, 902, 934, 1021, 1381
HpyAV CCTTC 4 cut(s) 163, 656, 713, 1000
HpyCH4III ACNGT 3 cut(s) 565, 608, 1236
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 2 cut(s) 194, 370
Hsp92I GRCGYC 1 cut(s) 1087
Hsp92II CATG 7 cut(s) 202, 238, 674, 900, 940, 950, 1247
HspAI GCGC 1 cut(s) 1087
KasI GGCGCC 1 cut(s) 1086
KspAI GTTAAC 1 cut(s) 175
Kzo9I GATC 5 cut(s) 201, 391, 583, 841, 1300
LmnI GCTCC 1 cut(s) 1151
Lsp1109I GCAGC 2 cut(s) 826, 1381
LweI GCATC 3 cut(s) 487, 940, 977
MabI ACCWGGT 1 cut(s) 1188
MaeI CTAG 2 cut(s) 675, 776
MaeIII GTNAC 5 cut(s) 514, 557, 659, 829, 1010
MalI GATC 5 cut(s) 203, 393, 585, 843, 1302
MboI GATC 5 cut(s) 201, 391, 583, 841, 1300
MboII GAAGA 7 cut(s) 107, 132, 452, 593, 728, 1189, 1295
MflI RGATCY 1 cut(s) 1300
Mly113I GGCGCC 1 cut(s) 1087
MlyI GAGTC 6 cut(s) 353, 467, 884, 952, 1054, 1124
MnlI CCTC 9 cut(s) 22, 112, 129, 379, 381, 829, 882, 921, 1176
Mph1103I ATGCAT 1 cut(s) 1171
MslI CAYNNNNRTG 1 cut(s) 1164
MspR9I CCNGG 3 cut(s) 249, 491, 1190
MvaI CCWGG 3 cut(s) 249, 491, 1190
MvnI CGCG 1 cut(s) 906
MwoI GCNNNNNNNGC 1 cut(s) 785
NarI GGCGCC 1 cut(s) 1087
NdeI CATATG 1 cut(s) 1317
NdeII GATC 5 cut(s) 201, 391, 583, 841, 1300
NlaIII CATG 7 cut(s) 202, 238, 674, 900, 940, 950, 1247
NlaIV GGNNCC 3 cut(s) 40, 1088, 1187
NmuCI GTSAC 1 cut(s) 557
NsiI ATGCAT 1 cut(s) 1171
NspI RCATGY 2 cut(s) 674, 1247
PaqCI CACCTGC 1 cut(s) 352
PciI ACATGT 1 cut(s) 1243
PfeI GAWTC 4 cut(s) 5, 30, 1229, 1334
PflFI GACNNNGTC 1 cut(s) 563
PflMI CCANNNNNTGG 2 cut(s) 384, 769
PkrI GCNGC 2 cut(s) 816, 1396
PleI GAGTC 6 cut(s) 353, 467, 883, 952, 1053, 1124
PluTI GGCGCC 1 cut(s) 1090
PpsI GAGTC 6 cut(s) 353, 467, 883, 952, 1053, 1124
PscI ACATGT 1 cut(s) 1243
PshBI ATTAAT 1 cut(s) 1077
Psp6I CCWGG 3 cut(s) 247, 489, 1188
PspEI GGTNACC 2 cut(s) 659, 1010
PspGI CCWGG 3 cut(s) 247, 489, 1188
PspN4I GGNNCC 3 cut(s) 40, 1088, 1187
PspPI GGNCC 3 cut(s) 39, 481, 1026
PsrI GAACNNNNNNTAC 2 cut(s) 441, 473
PstI CTGCAG 1 cut(s) 349
PstNI CAGNNNCTG 1 cut(s) 384
PsuI RGATCY 1 cut(s) 1300
PsyI GACNNNGTC 1 cut(s) 563
RsaI GTAC 3 cut(s) 1268, 1314, 1382
RsaNI GTAC 3 cut(s) 1267, 1313, 1381
RseI CAYNNNNRTG 1 cut(s) 1164
SatI GCNGC 2 cut(s) 815, 1395
Sau3AI GATC 5 cut(s) 201, 391, 583, 841, 1300
Sau96I GGNCC 3 cut(s) 39, 481, 1026
SbfI CCTGCAGG 1 cut(s) 349
SchI GAGTC 6 cut(s) 353, 467, 884, 952, 1054, 1124
ScrFI CCNGG 3 cut(s) 249, 491, 1190
SdaI CCTGCAGG 1 cut(s) 349
SexAI ACCWGGT 1 cut(s) 1188
SfaNI GCATC 3 cut(s) 487, 940, 977
SfcI CTRYAG 1 cut(s) 345
SfoI GGCGCC 1 cut(s) 1088
SinI GGWCC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 1164
SmlI CTYRAG 1 cut(s) 872
SmoI CTYRAG 1 cut(s) 872
Sse8387I CCTGCAGG 1 cut(s) 349
SsiI CCGC 1 cut(s) 779
SspDI GGCGCC 1 cut(s) 1086
SspI AATATT 1 cut(s) 1325
SspMI CTAG 2 cut(s) 675, 776
StyD4I CCNGG 3 cut(s) 247, 489, 1188
StyI CCWWGG 1 cut(s) 397
TaaI ACNGT 3 cut(s) 565, 608, 1236
TatI WGTACW 3 cut(s) 1266, 1312, 1380
TfiI GAWTC 4 cut(s) 5, 30, 1229, 1334
TscAI CASTG 3 cut(s) 370, 385, 568
TseFI GTSAC 1 cut(s) 557
TseI GCWGC 2 cut(s) 814, 1394
Tsp45I GTSAC 1 cut(s) 557
TspDTI ATGAA 3 cut(s) 295, 953, 1334
TspRI CASTG 3 cut(s) 370, 385, 568
Tth111I GACNNNGTC 1 cut(s) 563
Van91I CCANNNNNTGG 2 cut(s) 384, 769
VpaK11BI GGWCC 1 cut(s) 481
VspI ATTAAT 1 cut(s) 1077
XapI RAATTY 2 cut(s) 502, 858
XceI RCATGY 2 cut(s) 674, 1247
XmiI GTMKAC 1 cut(s) 933
XspI CTAG 2 cut(s) 675, 776
Zsp2I ATGCAT 1 cut(s) 1171
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.