Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG348800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3666 bp

ATGGCTGTGGACACCAATTTCGCATCCTCATTGCTCCAGAATTTGAACCTCGAAGATCCACTGCTTCATCCAACCACATGGGAATCCATCCCTTCCGAAAGCGGCCATTTCCATCTTCCAACCTCCACCTCTCACTCCCTCTACCACGCCTCCACCGTCTCCGAGGCGAGTCTGGTGCGGCTGGCGATGAATGCACTGCAAGGAGTTGAATCCTCCCTTATTAGTGTCCAAAAGCTTTCTGCTGCGTTTCGCTCCGATCCGGCTGATAGGACCTTCCATCAGGTTCCGAGTCTGTGGAGTAGGTCTTCCAGCACTCATGCTCTGGGGAATGTTCTCCACCCCATAGGCTGCTCAGGTTTGCTGGTCTTTCTTCTCGGAAAATTCGTCGATTACTTTACCGATTTGAATGTGGATGGTCAAAATGAAGCTCCACCAAAACAGTGCGCTCCGTATAGTCTTGTTAATCATGCTTTTGCTGTTGCGGTGGGGAAGGTTGTGGAGGGTTACATGTGTGCTTTGGATACCTTGTATGCATCTGTGGGTGTGAGGCGGCGCTCTTCTTCGGGCTCGCCTTCTGCCGTGGGATGTCTCAACAGTGTAGTCCATTCGGAGCTTACTTTGTTGGAGCTGTATCTGCACACAAAGGAATTGAGGACTCAGATTGAATCCCTTACAAACACATGCAACTTATATCAGTTTTCTGATTGCTTCTCGGCGTCTTCTTTTGATGAGTTACTTACGAAAGCCAAAGCTGAGTTTTGTAATTTCTATAGAGGGGGTGACCTACTCACGTATTTGTATACTCAGTTACAGGTTGCTGATCCTGCTCATCGTCCTGTACTAAAATTTCTTTTTCTTCGTACATGTGAACCGTACTTCGGATTCATAAGATCATGGATATTCAAAGCTGAGATTAGCGATCCTTATGAGGAGTTTTTGGTTGAATATGTTTACTCTCCTAATCCATCTGTTGAAGCTGGTATCTCTATTGACTTCCCATTGGCAACTATTAGGGAACGAGATGGAGTTCCTGTTCCTTGTTTTTTGAAGGACTGCTTGATTCCACTTTTCAGAGCTGGTCAGCAGCTGCAAGTTCTAGCGAAATTGCTTGAATTGTGTACTTTTGTTGCCCCTAAGAACCATACTTATGAGAGTTTTCTTCCCTGCTGGAGTGGGTTTTCAAGCAATTGTCCATCTTATGCATCTCCATTGACGTTCAGCAAAGGAAATATAGAGTCCATGGTACTTTCAAGGGAATGTTATTACAAAAGGATGCAGGACCAACTCCAGAATGTTTTGATGGAATTAGAGTTCAGATTTCAACAGGTGGTTTGTCGTGGTAGTTTAGTTTTTTCAGATGGAACTTGTGCTTTCTCCTATTTTATTAAAAATGTAATTTCACAAGACACACTGCCTGTTCTCTTGGATAATAGTGGAAGGAGTTCAACCATCCCAGTTTTAGTCCCACTGGATGACAGTTTTATTGCTCCTTCAACAGATGATGAAAGGGAGTCAAATGTGGTGGCTGATGATTTGGATTCAGACGAGTTAAGTACAAGAGACGATGTATGTTACACTGCAGATGCATACGAGTCATCTGAATGTTCAAGCTCCACTATATCTGAAGAGCAAAATGTGTTTGAGCAGATGACTGAGTTCCCTAATCACATTGTAGGGGAAGAAGAAAAGTATTTATCTGCTTTAAGCTTCTCAATGAGTATTCCAGTTGATACTTTGCAAAAGCCCCATGGATCTGCAGATTCATGTCATATAGACAAGATTAGTAGAAGTTGTGAAAGAAAAGATGCCTTTGGGCATTCTCATTATAAAGGCATACTTACGAGTCAGATATTGGATGTTCAATTTTCAGATTGTCTCTCTGATAAGGATTGGCCGGAAAGAGATTATTTTGAGAATCAGTCTGTCATTGATATAGAGTACAAAGAAGGTCTGAAGTCACGTCCAACGGACTTTGCCTCAAAGGTGAATGAAAGAATAATGGGATCATTAAAGGAAGGTTCATCATATTTTAGAAAAAGAATCATGGATAGTAATGCTTTAATAGAAGAAGCCTTTGGCAAGGTTGAACCTCAAAAGGCCAGTTATACTTCTGATACATTTGCATTACAACAGTGGAAGGTTAATTACCATAACAATTTTCTCAGCATGAACCCAATGTTGACAAAAAATAATTTCCTTCACCTAACATCCAGGCCTGGAGAGAGATGCAAGACAGACCTTGGGGATTCTTTGGCTTACTTTGATTTCTCTCACGTAAAAGATCCTTGTAAGGGGTTTCCGGTAAAGGTTCCTGTAGGGCTCATGGACTCTGGTGCCTCTACTACCAGTGTTAGGAGTGATCACCATCTGAAACAATGTTCTGCAGAAGCTGATGTTCTGATTGGAAGAACAATAGTATCTGACTCTCTTCCGTCTTCAGATTCGAAGGGCCACACCAAAGGAGATGCTACTTTAAAAAATGTTTCTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCATTAATAGAGTTGAAGATCACAGAGAAGGCTTGGCGGCCACTTTTGACATACCACTTGATTTTATTATCGACACATGCCTTCTGCAGGAAATCATGCTCCAATATAAGTATGTCAGCAAGTTAACTATTAAGTTGCTTGAAGAAGGATTTGATTTGCAAGAACATTTGCTGGCTCTGCGACGGTACCACTTCATGGAATTAGCAGACTGGGCAGATTTGTTTATTATGTCCCTTTGGCATCATAAATGGAGTATTACGCAGGCAGATCATAGACTTTCCGAAATTCAAAGTTTTCTTGAGTCGTCAGTTCAGAGGTCATCATGTGAACGTGATCATAATAAGGACAGGTTATTTGTGTACCTGAAAGGACATGATGCAGTGCCTCTTTCAGCATCTGCTATTGGAGTCCATTCCTTCAACTTTCTAGGTTTGGGATATCGAGTGGACTGGCCCATCAGCATTGTTTTGACTCCTGGTGCATTGAAAATATATGCCGAGATATTCAGTTTCTTGATACAAGTGAAACTTGCTCTGTTTTCATTGACTGACGTGTGGTGCCAATTGAAGGATCTGGTCCAGTTGATTAGTCGGAATAACCACTCTGAGCAACATGAAAAGGAAGTGAGTCATTTCAATGCAATGGTGAAAATGAGGCATCAGGTCAATCACTTTGTATCTACATTACAGCAATATGTGGAGTCACAGCTATCACATGTATCATGGTGCAGGTTTCTATATTCACTTAAGCATAAGGTCAAAGATATGATGGATCTTCAGTCAGTGCACATGGCATATCTCTCAGATTCACTTCACATATGTTTCCTCTCTGATGAAACAAGACCTATAGCTTGCATCATTGAGAGCATTCTGCAGTGTGCTCTGGACTTCAGGTCTTGTCTCACTGGGGAAGTATGGAATGCAGGAACAGGTCAAGGGAATTTAATTGCAAGACACTCTGGAATCAATATATCCCAGGTTCTTTCCATAAAGCAAACGTTTGACACAAATATGAAAGAATTGCACTTGTGTTACCTCAGATCACCTAAACATGGCGAGTTTGGACTCTCTCACTTCTGGGAATACCTGAACTACAACAAGTATTACTCAGATGCTGCTTCCAAAGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

1221

Amino Acids

137.64

Weight (kDa)

5.55

Isoelectric Point (pI)

45.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	63 - 369	2.3e-21	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	897 - 1213	1e-61	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1827
Acc36I	ACCTGC	1 cut(s)	3252
Acc65I	GGTACC	1 cut(s)	2718
AccB1I	GGYRCC	3 cut(s)	2333, 2718, 3090
AccB7I	CCANNNNNTGG	1 cut(s)	2728
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	5 cut(s)	102, 178, 482, 550, 2570
AclI	AACGTT	1 cut(s)	3530
AclWI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2276, 3111, 3312
AcoI	YGGCCR	3 cut(s)	103, 1892, 2571
AcsI	RAATTY	5 cut(s)	40, 380, 845, 2817, 3472
AcuI	CTGAAG	5 cut(s)	1644, 1973, 2421, 3293, 3406
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	9 cut(s)	840, 862, 875, 1120, 1245, 1555, 1940, 2720, 2894
AfiI	CCNNNNNNNGG	7 cut(s)	878, 2291, 2352, 2620, 2728, 3100, 3584
AflII	CTTAAG	1 cut(s)	3278
AflIII	ACRYGT	4 cut(s)	507, 863, 3084, 3247
AhdI	GACNNNNNGTC	1 cut(s)	3424
AjiI	CACGTC	2 cut(s)	1961, 3085
AjnI	CCWGG	4 cut(s)	2210, 2215, 3007, 3507
AjuI	GAANNNNNNNTTGG	2 cut(s)	2058, 2090
AloI	GAACNNNNNNTCC	4 cut(s)	1017, 1049, 1295, 1327
Alw21I	GWGCWC	2 cut(s)	3321, 3415
Alw26I	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3437
Alw44I	GTGCAC	1 cut(s)	3317
AlwI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2276, 3111, 3312
AlwNI	CAGNNNCTG	4 cut(s)	1087, 2390, 2930, 3647
AoxI	GGCC	7 cut(s)	103, 1892, 2097, 2213, 2449, 2571, 2984
ApaLI	GTGCAC	1 cut(s)	3317
ApeKI	GCWGC	5 cut(s)	242, 348, 1084, 1087, 3647
ApoI	RAATTY	5 cut(s)	40, 380, 845, 2817, 3472
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 2870, 2902
AseI	ATTAAT	1 cut(s)	2538
Asp700I	GAANNNNTTC	1 cut(s)	1441
Asp718I	GGTACC	1 cut(s)	2718
AspLEI	GCGC	2 cut(s)	446, 555
AspS9I	GGNCC	5 cut(s)	270, 1279, 2449, 2985, 3109
AsuHPI	GGTGA	6 cut(s)	791, 1996, 2192, 2354, 3190, 3567
AsuII	TTCGAA	1 cut(s)	2444
AvaII	GGWCC	3 cut(s)	270, 1279, 3109
BaeGI	GKGCMC	1 cut(s)	3321
BaeI	ACNNNNGTAYC	2 cut(s)	2400, 2433
BanI	GGYRCC	3 cut(s)	2333, 2718, 3090
BanII	GRGCYC	2 cut(s)	569, 2322
BarI	GAAGNNNNNNTAC	2 cut(s)	2129, 2161
BbsI	GAAGAC	3 cut(s)	297, 711, 2427
Bbv12I	GWGCWC	2 cut(s)	3321, 3415
BbvI	GCAGC	5 cut(s)	229, 335, 1074, 1096, 3634
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	4 cut(s)	2212, 2217, 3009, 3509
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	2359, 2866
BcoDI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3437
BfaI	CTAG	2 cut(s)	1097, 2960
BfmI	CTRYAG	8 cut(s)	769, 1578, 1755, 2313, 2382, 2618, 3378, 3404
BfoI	RGCGCY	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	3278
BfuAI	ACCTGC	1 cut(s)	3252
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2571, 3648
BlsI	GCNGC	9 cut(s)	104, 180, 244, 350, 552, 1086, 1089, 2572, 3649
Bme1390I	CCNGG	4 cut(s)	2212, 2217, 3009, 3509
Bme18I	GGWCC	3 cut(s)	270, 1279, 3109
BmeRI	GACNNNNNGTC	1 cut(s)	3424
BmgBI	CACGTC	2 cut(s)	1961, 3085
BmgT120I	GGNCC	5 cut(s)	270, 1279, 2449, 2985, 3109
BmiI	GGNNCC	5 cut(s)	285, 2310, 2335, 2720, 3092
BmrFI	CCNGG	4 cut(s)	2212, 2217, 3009, 3509
BmrI	ACTGGG	3 cut(s)	1448, 2752, 3447
BmuI	ACTGGG	3 cut(s)	1448, 2752, 3447
BpiI	GAAGAC	3 cut(s)	297, 711, 2427
BpmI	CTGGAG	4 cut(s)	20, 1189, 1271, 2238
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	2444
BpuEI	CTTGAG	1 cut(s)	2852
BsaAI	YACGTR	2 cut(s)	792, 2275
BsaBI	GATNNNNATC	1 cut(s)	2364
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2239, 3507
BsaWI	WCCGGW	1 cut(s)	2299
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 1017, 1047
Bsc4I	CCNNNNNNNGG	7 cut(s)	878, 2291, 2352, 2620, 2728, 3100, 3584
Bse1I	ACTGG	9 cut(s)	1454, 1473, 1724, 2100, 2346, 2747, 2987, 3112, 3442
Bse3DI	GCAATG	2 cut(s)	29, 3180
Bse8I	GATNNNNATC	1 cut(s)	2364
BseBI	CCWGG	4 cut(s)	2212, 2217, 3009, 3509
BseDI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2239, 3507
BseJI	GATNNNNATC	1 cut(s)	2364
BseLI	CCNNNNNNNGG	7 cut(s)	878, 2291, 2352, 2620, 2728, 3100, 3584
BseMI	GCAATG	2 cut(s)	29, 3180
BseNI	ACTGG	9 cut(s)	1454, 1473, 1724, 2100, 2346, 2747, 2987, 3112, 3442
BseRI	GAGGAG	1 cut(s)	944
BseSI	GKGCMC	1 cut(s)	3321
BseXI	GCAGC	5 cut(s)	229, 335, 1074, 1096, 3634
BsgI	GTGCAG	2 cut(s)	620, 3280
BshFI	GGCC	7 cut(s)	105, 1894, 2099, 2215, 2451, 2573, 2986
BshNI	GGYRCC	3 cut(s)	2333, 2718, 3090
BsiHKAI	GWGCWC	2 cut(s)	3321, 3415
BsiSI	CCGG	3 cut(s)	260, 1895, 2300
BslFI	GGGAC	2 cut(s)	1448, 2749
BslI	CCNNNNNNNGG	7 cut(s)	878, 2291, 2352, 2620, 2728, 3100, 3584
BsmAI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3437
BsmBI	CGTCTC	2 cut(s)	163, 1554
BsmFI	GGGAC	2 cut(s)	1448, 2749
BsmI	GAATGC	4 cut(s)	196, 1816, 3399, 3457
BsnI	GGCC	7 cut(s)	105, 1894, 2099, 2215, 2451, 2573, 2986
Bsp119I	TTCGAA	1 cut(s)	2444
Bsp1286I	GDGCHC	4 cut(s)	569, 2322, 3321, 3415
Bsp19I	CCATGG	2 cut(s)	1239, 1747
BspACI	CCGC	5 cut(s)	102, 178, 482, 550, 2570
BspANI	GGCC	7 cut(s)	105, 1894, 2099, 2215, 2451, 2573, 2986
BspLI	GGNNCC	5 cut(s)	285, 2310, 2335, 2720, 3092
BspMAI	CTGCAG	5 cut(s)	1582, 1759, 2386, 2622, 3408
BspMI	ACCTGC	1 cut(s)	3252
BspPI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2276, 3111, 3312
BspQI	GCTCTTC	2 cut(s)	562, 1620
BspT104I	TTCGAA	1 cut(s)	2444
BspT107I	GGYRCC	3 cut(s)	2333, 2718, 3090
BspTI	CTTAAG	1 cut(s)	3278
BsrDI	GCAATG	2 cut(s)	29, 3180
BsrI	ACTGG	9 cut(s)	1454, 1473, 1724, 2100, 2346, 2747, 2987, 3112, 3442
BssECI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2239, 3507
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	3 cut(s)	1239, 1747, 2239
Bst1107I	GTATAC	1 cut(s)	801
Bst2UI	CCWGG	4 cut(s)	2212, 2217, 3009, 3509
Bst4CI	ACNGT	8 cut(s)	157, 441, 596, 873, 1478, 2133, 2533, 2718
Bst6I	CTCTTC	3 cut(s)	562, 1620, 2433
BstACI	GRCGYC	1 cut(s)	716
BstAFI	CTTAAG	1 cut(s)	3278
BstBAI	YACGTR	2 cut(s)	792, 2275
BstBI	TTCGAA	1 cut(s)	2444
BstC8I	GCNNGC	5 cut(s)	183, 569, 2706, 2796, 3385
BstDSI	CCRYGG	3 cut(s)	579, 1239, 1747
BstEII	GGTNACC	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	2618
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	446, 555
BstMAI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3437
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2710, 2744, 3656
BstNI	CCWGG	4 cut(s)	2212, 2217, 3009, 3509
BstNSI	RCATGY	5 cut(s)	511, 684, 867, 2613, 3251
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	4 cut(s)	2210, 2215, 3007, 3507
BstSFI	CTRYAG	8 cut(s)	769, 1578, 1755, 2313, 2382, 2618, 3378, 3404
BstSLI	GKGCMC	1 cut(s)	3321
BstV1I	GCAGC	5 cut(s)	229, 335, 1074, 1096, 3634
BstV2I	GAAGAC	3 cut(s)	297, 711, 2427
BstX2I	RGATCY	5 cut(s)	55, 1751, 2281, 3103, 3304
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	5 cut(s)	55, 1751, 2281, 3103, 3304
BstZ17I	GTATAC	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	7 cut(s)	105, 1894, 2099, 2215, 2451, 2573, 2986
BtgI	CCRYGG	3 cut(s)	579, 1239, 1747
BtgZI	GCGATG	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	1961, 3085
BtsI	GCAGTG	6 cut(s)	59, 194, 1409, 1575, 2919, 3413
BveI	ACCTGC	1 cut(s)	3252
Cac8I	GCNNGC	5 cut(s)	183, 569, 2706, 2796, 3385
CaiI	CAGNNNCTG	4 cut(s)	1087, 2390, 2930, 3647
CfoI	GCGC	2 cut(s)	446, 555
Cfr13I	GGNCC	5 cut(s)	270, 1279, 2449, 2985, 3109
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1554, 1939, 2719, 2893
CspCI	CAANNNNNGTGG	2 cut(s)	1503, 1538
CviQI	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1554, 1939, 2719, 2893
DraI	TTTAAA	1 cut(s)	2475
DriI	GACNNNNNGTC	1 cut(s)	3424
EaeI	YGGCCR	3 cut(s)	103, 1892, 2571
Eam1104I	CTCTTC	3 cut(s)	562, 1620, 2433
Eam1105I	GACNNNNNGTC	1 cut(s)	3424
EarI	CTCTTC	3 cut(s)	562, 1620, 2433
Eco130I	CCWWGG	3 cut(s)	1239, 1747, 2239
Eco147I	AGGCCT	1 cut(s)	2215
Eco24I	GRGCYC	2 cut(s)	569, 2322
Eco32I	GATATC	1 cut(s)	2972
Eco47I	GGWCC	3 cut(s)	270, 1279, 3109
Eco57I	CTGAAG	5 cut(s)	1644, 1973, 2421, 3293, 3406
Eco91I	GGTNACC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	2618
EcoO109I	RGGNCCY	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	4 cut(s)	2210, 2215, 3007, 3507
EcoRV	GATATC	1 cut(s)	2972
EcoT14I	CCWWGG	3 cut(s)	1239, 1747, 2239
EcoT22I	ATGCAT	3 cut(s)	535, 1204, 1588
EcoT38I	GRGCYC	2 cut(s)	569, 2322
ErhI	CCWWGG	3 cut(s)	1239, 1747, 2239
Esp3I	CGTCTC	2 cut(s)	163, 1554
FalI	AAGNNNNNCTT	6 cut(s)	1040, 1072, 1821, 1853, 3045, 3077
FaqI	GGGAC	2 cut(s)	1448, 2749
FauNDI	CATATG	1 cut(s)	3350
FbaI	TGATCA	2 cut(s)	2359, 2866
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2571, 3648
FriOI	GRGCYC	2 cut(s)	569, 2322
Fsp4HI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2571, 3648
FspBI	CTAG	2 cut(s)	1097, 2960
GlaI	GCGC	2 cut(s)	445, 554
GluI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2571, 3648
GsuI	CTGGAG	4 cut(s)	20, 1189, 1271, 2238
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	7 cut(s)	105, 1894, 2099, 2215, 2451, 2573, 2986
HapII	CCGG	3 cut(s)	260, 1895, 2300
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	446, 555
Hin1I	GRCGYC	1 cut(s)	716
Hin6I	GCGC	2 cut(s)	444, 553
HinP1I	GCGC	2 cut(s)	444, 553
HincII	GTYRAC	2 cut(s)	2181, 2658
HindII	GTYRAC	2 cut(s)	2181, 2658
HindIII	AAGCTT	2 cut(s)	233, 1705
HpaI	GTTAAC	1 cut(s)	2658
HpaII	CCGG	3 cut(s)	260, 1895, 2300
HphI	GGTGA	6 cut(s)	791, 1996, 2192, 2354, 3190, 3567
Hpy188III	TCNNGA	6 cut(s)	37, 1288, 2831, 3046, 3416, 3492
Hpy99I	CGWCG	2 cut(s)	389, 2718
HpyCH4III	ACNGT	8 cut(s)	157, 441, 596, 873, 1478, 2133, 2533, 2718
HpyCH4IV	ACGT	7 cut(s)	791, 1214, 1960, 2274, 2863, 3084, 3530
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2710, 2744, 3656
HpySE526I	ACGT	7 cut(s)	791, 1214, 1960, 2274, 2863, 3084, 3530
Hsp92I	GRCGYC	1 cut(s)	716
HspAI	GCGC	2 cut(s)	444, 553
KpnI	GGTACC	1 cut(s)	2722
Ksp22I	TGATCA	2 cut(s)	2359, 2866
KspAI	GTTAAC	1 cut(s)	2658
LguI	GCTCTTC	2 cut(s)	562, 1620
LmnI	GCTCC	9 cut(s)	39, 257, 433, 451, 610, 625, 1492, 1616, 2637
Lsp1109I	GCAGC	5 cut(s)	229, 335, 1074, 1096, 3634
MaeI	CTAG	2 cut(s)	1097, 2960
MaeII	ACGT	7 cut(s)	791, 1214, 1960, 2274, 2863, 3084, 3530
MaeIII	GTNAC	9 cut(s)	503, 732, 779, 807, 1571, 1956, 2525, 3234, 3563
MfeI	CAATTG	2 cut(s)	1186, 3095
MflI	RGATCY	5 cut(s)	55, 1751, 2281, 3103, 3304
MhlI	GDGCHC	4 cut(s)	569, 2322, 3321, 3415
MmeI	TCCRAC	5 cut(s)	95, 143, 603, 1988, 3104
Mph1103I	ATGCAT	3 cut(s)	535, 1204, 1588
MroXI	GAANNNNTTC	1 cut(s)	1441
MslI	CAYNNNNRTG	4 cut(s)	1146, 1600, 3168, 3542
MspA1I	CMGCKG	1 cut(s)	1087
MspCI	CTTAAG	1 cut(s)	3278
MspI	CCGG	3 cut(s)	260, 1895, 2300
MspR9I	CCNGG	4 cut(s)	2212, 2217, 3009, 3509
MunI	CAATTG	2 cut(s)	1186, 3095
Mva1269I	GAATGC	4 cut(s)	196, 1816, 3399, 3457
MvaI	CCWGG	4 cut(s)	2212, 2217, 3009, 3509
MwoI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2710, 2744, 3656
NcoI	CCATGG	2 cut(s)	1239, 1747
NdeI	CATATG	1 cut(s)	3350
NlaIV	GGNNCC	5 cut(s)	285, 2310, 2335, 2720, 3092
NmeAIII	GCCGAG	2 cut(s)	692, 3055
NmuCI	GTSAC	4 cut(s)	779, 1956, 2525, 3234
NsiI	ATGCAT	3 cut(s)	535, 1204, 1588
NspI	RCATGY	5 cut(s)	511, 684, 867, 2613, 3251
NspV	TTCGAA	1 cut(s)	2444
PceI	AGGCCT	1 cut(s)	2215
PciI	ACATGT	3 cut(s)	507, 863, 3247
PciSI	GCTCTTC	2 cut(s)	562, 1620
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 381
PctI	GAATGC	4 cut(s)	196, 1816, 3399, 3457
PdmI	GAANNNNTTC	1 cut(s)	1441
PflFI	GACNNNGTC	1 cut(s)	2531
PflMI	CCANNNNNTGG	1 cut(s)	2728
PkrI	GCNGC	9 cut(s)	104, 180, 244, 350, 552, 1086, 1089, 2572, 3649
Ppu21I	YACGTR	2 cut(s)	792, 2275
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	3 cut(s)	507, 863, 3247
PshBI	ATTAAT	1 cut(s)	2538
PsiI	TTATAA	1 cut(s)	1827
Psp1406I	AACGTT	1 cut(s)	3530
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	4 cut(s)	2210, 2215, 3007, 3507
PspEI	GGTNACC	1 cut(s)	779
PspGI	CCWGG	4 cut(s)	2210, 2215, 3007, 3507
PspN4I	GGNNCC	5 cut(s)	285, 2310, 2335, 2720, 3092
PspPI	GGNCC	5 cut(s)	270, 1279, 2449, 2985, 3109
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	5 cut(s)	1582, 1759, 2386, 2622, 3408
PstNI	CAGNNNCTG	4 cut(s)	1087, 2390, 2930, 3647
PsuI	RGATCY	5 cut(s)	55, 1751, 2281, 3103, 3304
PsyI	GACNNNGTC	1 cut(s)	2531
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	9 cut(s)	840, 862, 875, 1120, 1245, 1555, 1940, 2720, 2894
RsaNI	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1554, 1939, 2719, 2893
RseI	CAYNNNNRTG	4 cut(s)	1146, 1600, 3168, 3542
SapI	GCTCTTC	2 cut(s)	562, 1620
SatI	GCNGC	9 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2571, 3648
Sau96I	GGNCC	5 cut(s)	270, 1279, 2449, 2985, 3109
ScrFI	CCNGG	4 cut(s)	2212, 2217, 3009, 3509
SduI	GDGCHC	4 cut(s)	569, 2322, 3321, 3415
SfcI	CTRYAG	8 cut(s)	769, 1578, 1755, 2313, 2382, 2618, 3378, 3404
SfuI	TTCGAA	1 cut(s)	2444
SinI	GGWCC	3 cut(s)	270, 1279, 3109
SmiMI	CAYNNNNRTG	4 cut(s)	1146, 1600, 3168, 3542
SmlI	CTYRAG	2 cut(s)	2831, 3278
SmoI	CTYRAG	2 cut(s)	2831, 3278
SseBI	AGGCCT	1 cut(s)	2215
SsiI	CCGC	5 cut(s)	102, 178, 482, 550, 2570
SspMI	CTAG	2 cut(s)	1097, 2960
StuI	AGGCCT	1 cut(s)	2215
StyD4I	CCNGG	4 cut(s)	2210, 2215, 3007, 3507
StyI	CCWWGG	3 cut(s)	1239, 1747, 2239
TaaI	ACNGT	8 cut(s)	157, 441, 596, 873, 1478, 2133, 2533, 2718
TaiI	ACGT	7 cut(s)	794, 1217, 1963, 2277, 2866, 3087, 3533
TaqI	TCGA	5 cut(s)	51, 387, 2444, 2604, 2974
TatI	WGTACW	4 cut(s)	838, 1118, 1553, 1938
TauI	GCSGC	4 cut(s)	105, 181, 553, 2573
TseFI	GTSAC	4 cut(s)	779, 1956, 2525, 3234
TseI	GCWGC	5 cut(s)	242, 348, 1084, 1087, 3647
Tsp45I	GTSAC	4 cut(s)	779, 1956, 2525, 3234
TspGWI	ACGGA	3 cut(s)	438, 1982, 2421
Tth111I	GACNNNGTC	1 cut(s)	2531
Van91I	CCANNNNNTGG	1 cut(s)	2728
Vha464I	CTTAAG	1 cut(s)	3278
VneI	GTGCAC	1 cut(s)	3317
VpaK11BI	GGWCC	3 cut(s)	270, 1279, 3109
VspI	ATTAAT	1 cut(s)	2538
XagI	CCTNNNNNAGG	1 cut(s)	2618
XapI	RAATTY	5 cut(s)	40, 380, 845, 2817, 3472
XceI	RCATGY	5 cut(s)	511, 684, 867, 2613, 3251
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	1441
XspI	CTAG	2 cut(s)	1097, 2960
Zsp2I	ATGCAT	3 cut(s)	535, 1204, 1588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.