Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

47026366 .. 47038262

Gene Structure 11897 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG336700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3210 bp

ATGGCTGTGGACACCAATTTCGCATCCTCATTGCTCCAGAATTTGAACCTCGAAGATCCACTGCTTCATCCAACCACATGGGAATCCATCCCTTCCGAAAGCGGCCATTTCCATCTTCCAACCTCCACCTCTCACTCCCTCTACCACGCCTCCACCGTCTCCGAGGCGAGTCTGGTGCGGCTGGCGATGAATGCACTGCAAGGAGTTGAATCCTCCCTTATTAGTGTCCAAAAGCTTTCTGCTGCGTTTCGCTCCGATCCGGCTGATAGGACCTTCCATCAGGTTCCGAGTCTGTGGAGTAGGTCTTCCAGCACTCATGCTCTGGGGAATGTTCTCCACCCCATAGGCTGCTCAGGTTTGCTGGTCTTTCTTCTCGGAAAATTCGTCGATTACTTTACCGATTTGAATGTGGATGGTCAAAATGAAGCTCCACCAAAACAGTGCGCTCCGTATAGTCTTGTTAATCATGCTTTTGCTGTTGCGGTGGGGAAGGTTGTGGAGGGTTACATGTGTGCTTTGGATACCTTGTATGCATCTGTGGGTGTGAGGCGGCGCTCTTCTTCGGGCTCGCCTTCTGCCGTGGGATGTCTCAACAGTGTAGTCCATTCGGAGCTTACTTTGTTGGAGCTGTATCTGCACACAAAGGAATTGAGGACTCAGATTGAATCCCTTACAAACACATGCAACTTATATCAGTTTTCTGATTGCTTCTCGGCGTCTTCTTTTGATGAGTTACTTACGAAAGCCAAAGCTGAGTTTTGTAATTTCTATAGAGGGGGTGACCTACTCACGTATTTGTATACTCAGTTACAGGTTGCTGATCCTGCTCATCGTCCTGTACTAAAATTTCTTTTTCTTCGTACATGTGAACCGTACTTCGGATTCATAAGATCATGGATATTCAAAGCTGAGATTAGCGATCCTTATGAGGAGTTTTTGGTTGAATATGTTTACTCTCCTAATCCATCTGTTGAAGCTGGTATCTCTATTGACTTCCCATTGGCAACTATTAGGGAACGAGATGGAGTTCCTGTTCCTTGTTTTTTGAAGGACTGCTTGATTCCACTTTTCAGAGCTGGTCAGCAGCTGCAAGTTCTAGCGAAATTGCTTGAATTGTGTACTTTTGTTGCCCCTAAGAACCATACTTATGAGAGTTTTCTTCCCTGCTGGAGTGGGTTTTCAAGCAATTGTCCATCTTATGCATCTCCATTGACGTTCAGCAAAGGAAATATAGAGTCCATGGTACTTTCAAGGGAATGTTATTACAAAAGGATGCAGGACCAACTCCAGAATGTTTTGATGGAATTAGAGTTCAGATTTCAACAGGTAATTTCACAAGACACACTGCCTGTTCTCTTGGATAATAGTGGAAGGAGTTCAACCATCCCAGTTTTAGTCCCACTGGATGACAGTTTTATTGCTCCTTCAACAGATGATGAAAGGGAGTCAAATGTGGTGGCTGATGATTTGGATTCAGACGAGTTAAGTACAAGAGACGATGTATGTTACACTGCAGATGCATACGAGTCATCTGAATGTTCAAGCTCCACTATATCTGAAGAGCAAAATGTGTTTGAGCAGATGACTGAGTTCCCTAATCACATTGTAGGGGAAGAAGAAAAGTATTTATCTGCTTTAAGCTTCTCAATGAGTATTCCAGTTGATACTTTGCAAAAGCCCCATGGATCTGCAGATTCATGTCATATAGACAAGATTAGTAGAAGTTGTGAAAGAAAAGATGCCTTTGGGCATTCTCATTATAAAGGCATACTTACGAGTCAGATATTGGATGTTCAATTTTCAGATTGTCTCTCTGATAAGGATTGGCCGGAAAGAGATTATTTTGAGAATCAGTCTGTCATTGATATAGAGTACAAAGAAGGTCTGAAGTCACGTCCAACGGACTTTGCCTCAAAGGTGAATGAAAGAATAATGGGATCATTAAAGGAAGGTTCATCATATTTTAGAAAAAGAATCATGGATAGTAATGCTTTAATAGAAGAAGCCTTTGGCAAGGTTGAACCTCAAAAGGCCAGTTATACTTCTGATACATTTGCATTACAACAGTGGAAGGTTAATTACCATAACAATTTTCTCAGCATGAACCCAATGTTGACAAAAAATAATTTCCTTCACCTAACATCCAGGCCTGGAGAGAGATGCAAGACAGACCTTGGGGATTCTTTGGCTTACTTTGATTTCTCTCACGTAAAAGATCCTTGTAAGGGGTTTCCGGTAAAGGTTCCTGTAGGGCTCATGGACTCTGGTGCCTCTACTACCAGTGTTAGGAGTGATCACCATCTGAAACAATGTTCTGCAGAAGCTGATGTTCTGATTGGAAGAACAATAGTATCTGACTCTCTTCCGTCTTCAGATTCGAAGGGCCACACCAAAGGAGATGCTACTTTAAAAAATGTTTCTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCATTAATAGAGTTGAAGATCACAGAGAAGGCTTGGCGGCCACTTTTGACATACCACTTGATTTTATTATCGACACATGCCTTCTGCAGGAAATCATGCTCCAATATAAGTATGTCAGCAAGTTAACTATTAAGTTGCTTGAAGAAGGATTTGATTTGCAAGAACATTTGCTGGCTCTGCGACGGTACCACTTCATGGAATTAGCAGACTGGGCAGATTTGTTTATTATGTCCCTTTGGCATCATAAATGGAGTATTACGCAGGCAGATCATAGACTTTCCGAAATTCAAAGTTTTCTTGAGTCGTCAGTTCAGAGGTCATCATGTGAACGTGATCATAATAAGGACAGGTTATTTGTGTACCTGAAAGGACATGATGCAGTGCCTCTTTCAGCATCTGCTATTGGAGTCCATTCCTTCAACTTTCTAGGTTTGGGATATCGAGTGGACTGGCCCATCAGCATTGTTTTGACTCCTGGTGCATTGAAAATATATGCCGAGATATTCAGTTTCTTGATACAAGTGAAACTTGCTCTGTTTTCATTGACTGACGTGTGGTGCCAATTGAAGGATCTGGTCCAGTTGATTAGTCGGAATAACCACTCTGAGCAACATGAAAAGGAAGTGAGTCATTTCAATGCAATGGTGAAAATGAGGCATCAGGTCAATCACTTTGTATCTACATTACAGCAATATGTGGAGTCACAGCTATCACATGTATCATGGTGCAGGTCAAAGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

1069

Amino Acids

120.4

Weight (kDa)

5.41

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	63 - 369	1.6e-21	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	875 - 1066	2.1e-37	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1761
Acc36I	ACCTGC	1 cut(s)	3186
Acc65I	GGTACC	1 cut(s)	2652
AccB1I	GGYRCC	3 cut(s)	2267, 2652, 3024
AccB7I	CCANNNNNTGG	1 cut(s)	2662
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	5 cut(s)	102, 178, 482, 550, 2504
AclWI	GGATC	8 cut(s)	50, 251, 815, 914, 1693, 1945, 2210, 3045
AcoI	YGGCCR	3 cut(s)	103, 1826, 2505
AcsI	RAATTY	4 cut(s)	40, 380, 845, 2751
AcuI	CTGAAG	3 cut(s)	1578, 1907, 2355
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	9 cut(s)	840, 862, 875, 1120, 1245, 1489, 1874, 2654, 2828
AfiI	CCNNNNNNNGG	6 cut(s)	878, 2225, 2286, 2554, 2662, 3034
AflIII	ACRYGT	4 cut(s)	507, 863, 3018, 3181
AjiI	CACGTC	2 cut(s)	1895, 3019
AjnI	CCWGG	3 cut(s)	2144, 2149, 2941
AjuI	GAANNNNNNNTTGG	2 cut(s)	1992, 2024
AloI	GAACNNNNNNTCC	4 cut(s)	1017, 1049, 1295, 1327
Alw26I	GTCTC	4 cut(s)	163, 593, 1488, 1814
AlwI	GGATC	8 cut(s)	50, 251, 815, 914, 1693, 1945, 2210, 3045
AlwNI	CAGNNNCTG	3 cut(s)	1087, 2324, 2864
AoxI	GGCC	7 cut(s)	103, 1826, 2031, 2147, 2383, 2505, 2918
ApeKI	GCWGC	4 cut(s)	242, 348, 1084, 1087
ApoI	RAATTY	4 cut(s)	40, 380, 845, 2751
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 2804, 2836
AseI	ATTAAT	1 cut(s)	2472
Asp700I	GAANNNNTTC	1 cut(s)	1375
Asp718I	GGTACC	1 cut(s)	2652
AspLEI	GCGC	2 cut(s)	446, 555
AspS9I	GGNCC	5 cut(s)	270, 1279, 2383, 2919, 3043
AsuHPI	GGTGA	5 cut(s)	791, 1930, 2126, 2288, 3124
AsuII	TTCGAA	1 cut(s)	2378
AvaII	GGWCC	3 cut(s)	270, 1279, 3043
BaeI	ACNNNNGTAYC	2 cut(s)	2334, 2367
BanI	GGYRCC	3 cut(s)	2267, 2652, 3024
BanII	GRGCYC	2 cut(s)	569, 2256
BarI	GAAGNNNNNNTAC	2 cut(s)	2063, 2095
BbsI	GAAGAC	3 cut(s)	297, 711, 2361
BbvI	GCAGC	4 cut(s)	229, 335, 1074, 1096
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	3 cut(s)	2146, 2151, 2943
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	2293, 2800
BcoDI	GTCTC	4 cut(s)	163, 593, 1488, 1814
BfaI	CTAG	2 cut(s)	1097, 2894
BfmI	CTRYAG	6 cut(s)	769, 1512, 1689, 2247, 2316, 2552
BfoI	RGCGCY	1 cut(s)	556
BfuAI	ACCTGC	1 cut(s)	3186
BfuI	GTATCC	1 cut(s)	514
BisI	GCNGC	8 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2505
BlsI	GCNGC	8 cut(s)	104, 180, 244, 350, 552, 1086, 1089, 2506
Bme1390I	CCNGG	3 cut(s)	2146, 2151, 2943
Bme18I	GGWCC	3 cut(s)	270, 1279, 3043
BmgBI	CACGTC	2 cut(s)	1895, 3019
BmgT120I	GGNCC	5 cut(s)	270, 1279, 2383, 2919, 3043
BmiI	GGNNCC	5 cut(s)	285, 2244, 2269, 2654, 3026
BmrFI	CCNGG	3 cut(s)	2146, 2151, 2943
BmrI	ACTGGG	2 cut(s)	1382, 2686
BmuI	ACTGGG	2 cut(s)	1382, 2686
BpiI	GAAGAC	3 cut(s)	297, 711, 2361
BpmI	CTGGAG	4 cut(s)	20, 1189, 1271, 2172
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	2378
BpuEI	CTTGAG	1 cut(s)	2786
BsaAI	YACGTR	2 cut(s)	792, 2209
BsaBI	GATNNNNATC	1 cut(s)	2298
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	5 cut(s)	162, 579, 1239, 1681, 2173
BsaWI	WCCGGW	1 cut(s)	2233
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 164, 1017, 1047
Bsc4I	CCNNNNNNNGG	6 cut(s)	878, 2225, 2286, 2554, 2662, 3034
Bse1I	ACTGG	8 cut(s)	1388, 1407, 1658, 2034, 2280, 2681, 2921, 3046
Bse3DI	GCAATG	2 cut(s)	29, 3114
Bse8I	GATNNNNATC	1 cut(s)	2298
BseBI	CCWGG	3 cut(s)	2146, 2151, 2943
BseDI	CCNNGG	5 cut(s)	162, 579, 1239, 1681, 2173
BseJI	GATNNNNATC	1 cut(s)	2298
BseLI	CCNNNNNNNGG	6 cut(s)	878, 2225, 2286, 2554, 2662, 3034
BseMI	GCAATG	2 cut(s)	29, 3114
BseMII	CTCAG	8 cut(s)	366, 671, 744, 818, 900, 1578, 2110, 3063
BseNI	ACTGG	8 cut(s)	1388, 1407, 1658, 2034, 2280, 2681, 2921, 3046
BseRI	GAGGAG	1 cut(s)	944
BseXI	GCAGC	4 cut(s)	229, 335, 1074, 1096
BsgI	GTGCAG	1 cut(s)	620
BshFI	GGCC	7 cut(s)	105, 1828, 2033, 2149, 2385, 2507, 2920
BshNI	GGYRCC	3 cut(s)	2267, 2652, 3024
BsiSI	CCGG	3 cut(s)	260, 1829, 2234
BslFI	GGGAC	2 cut(s)	1382, 2683
BslI	CCNNNNNNNGG	6 cut(s)	878, 2225, 2286, 2554, 2662, 3034
BsmAI	GTCTC	4 cut(s)	163, 593, 1488, 1814
BsmBI	CGTCTC	2 cut(s)	163, 1488
BsmFI	GGGAC	2 cut(s)	1382, 2683
BsmI	GAATGC	2 cut(s)	196, 1750
BsnI	GGCC	7 cut(s)	105, 1828, 2033, 2149, 2385, 2507, 2920
Bsp119I	TTCGAA	1 cut(s)	2378
Bsp1286I	GDGCHC	2 cut(s)	569, 2256
Bsp19I	CCATGG	2 cut(s)	1239, 1681
BspACI	CCGC	5 cut(s)	102, 178, 482, 550, 2504
BspANI	GGCC	7 cut(s)	105, 1828, 2033, 2149, 2385, 2507, 2920
BspCNI	CTCAG	8 cut(s)	365, 670, 745, 817, 901, 1579, 2109, 3064
BspLI	GGNNCC	5 cut(s)	285, 2244, 2269, 2654, 3026
BspMAI	CTGCAG	4 cut(s)	1516, 1693, 2320, 2556
BspMI	ACCTGC	1 cut(s)	3186
BspPI	GGATC	8 cut(s)	50, 251, 815, 914, 1693, 1945, 2210, 3045
BspQI	GCTCTTC	2 cut(s)	562, 1554
BspT104I	TTCGAA	1 cut(s)	2378
BspT107I	GGYRCC	3 cut(s)	2267, 2652, 3024
BsrDI	GCAATG	2 cut(s)	29, 3114
BsrI	ACTGG	8 cut(s)	1388, 1407, 1658, 2034, 2280, 2681, 2921, 3046
BssECI	CCNNGG	5 cut(s)	162, 579, 1239, 1681, 2173
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	3 cut(s)	1239, 1681, 2173
Bst1107I	GTATAC	1 cut(s)	801
Bst2UI	CCWGG	3 cut(s)	2146, 2151, 2943
Bst4CI	ACNGT	8 cut(s)	157, 441, 596, 873, 1412, 2067, 2467, 2652
Bst6I	CTCTTC	3 cut(s)	562, 1554, 2367
BstACI	GRCGYC	1 cut(s)	716
BstBAI	YACGTR	2 cut(s)	792, 2209
BstBI	TTCGAA	1 cut(s)	2378
BstC8I	GCNNGC	4 cut(s)	183, 569, 2640, 2730
BstDEI	CTNAG	9 cut(s)	352, 657, 753, 804, 909, 1134, 1587, 2096, 3072
BstDSI	CCRYGG	3 cut(s)	579, 1239, 1681
BstEII	GGTNACC	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	2552
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	446, 555
BstMAI	GTCTC	4 cut(s)	163, 593, 1488, 1814
BstMWI	GCNNNNNNNGC	5 cut(s)	191, 634, 824, 2644, 2678
BstNI	CCWGG	3 cut(s)	2146, 2151, 2943
BstNSI	RCATGY	5 cut(s)	511, 684, 867, 2547, 3185
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	3 cut(s)	2144, 2149, 2941
BstSFI	CTRYAG	6 cut(s)	769, 1512, 1689, 2247, 2316, 2552
BstV1I	GCAGC	4 cut(s)	229, 335, 1074, 1096
BstV2I	GAAGAC	3 cut(s)	297, 711, 2361
BstX2I	RGATCY	4 cut(s)	55, 1685, 2215, 3037
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	4 cut(s)	55, 1685, 2215, 3037
BstZ17I	GTATAC	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	7 cut(s)	105, 1828, 2033, 2149, 2385, 2507, 2920
BtgI	CCRYGG	3 cut(s)	579, 1239, 1681
BtgZI	GCGATG	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	1895, 3019
BtsI	GCAGTG	5 cut(s)	59, 194, 1343, 1509, 2853
BveI	ACCTGC	1 cut(s)	3186
Cac8I	GCNNGC	4 cut(s)	183, 569, 2640, 2730
CaiI	CAGNNNCTG	3 cut(s)	1087, 2324, 2864
CfoI	GCGC	2 cut(s)	446, 555
Cfr13I	GGNCC	5 cut(s)	270, 1279, 2383, 2919, 3043
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1488, 1873, 2653, 2827
CspCI	CAANNNNNGTGG	2 cut(s)	1437, 1472
CviQI	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1488, 1873, 2653, 2827
DdeI	CTNAG	9 cut(s)	352, 657, 753, 804, 909, 1134, 1587, 2096, 3072
DraI	TTTAAA	1 cut(s)	2409
EaeI	YGGCCR	3 cut(s)	103, 1826, 2505
Eam1104I	CTCTTC	3 cut(s)	562, 1554, 2367
EarI	CTCTTC	3 cut(s)	562, 1554, 2367
Eco130I	CCWWGG	3 cut(s)	1239, 1681, 2173
Eco147I	AGGCCT	1 cut(s)	2149
Eco24I	GRGCYC	2 cut(s)	569, 2256
Eco32I	GATATC	1 cut(s)	2906
Eco47I	GGWCC	3 cut(s)	270, 1279, 3043
Eco57I	CTGAAG	3 cut(s)	1578, 1907, 2355
Eco91I	GGTNACC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	2552
EcoO109I	RGGNCCY	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	2144, 2149, 2941
EcoRV	GATATC	1 cut(s)	2906
EcoT14I	CCWWGG	3 cut(s)	1239, 1681, 2173
EcoT22I	ATGCAT	3 cut(s)	535, 1204, 1522
EcoT38I	GRGCYC	2 cut(s)	569, 2256
ErhI	CCWWGG	3 cut(s)	1239, 1681, 2173
Esp3I	CGTCTC	2 cut(s)	163, 1488
FalI	AAGNNNNNCTT	6 cut(s)	1040, 1072, 1755, 1787, 2979, 3011
FaqI	GGGAC	2 cut(s)	1382, 2683
FbaI	TGATCA	2 cut(s)	2293, 2800
FblI	GTMKAC	1 cut(s)	800
Fnu4HI	GCNGC	8 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2505
FriOI	GRGCYC	2 cut(s)	569, 2256
Fsp4HI	GCNGC	8 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2505
FspBI	CTAG	2 cut(s)	1097, 2894
GlaI	GCGC	2 cut(s)	445, 554
GluI	GCNGC	8 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2505
GsuI	CTGGAG	4 cut(s)	20, 1189, 1271, 2172
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	7 cut(s)	105, 1828, 2033, 2149, 2385, 2507, 2920
HapII	CCGG	3 cut(s)	260, 1829, 2234
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	446, 555
Hin1I	GRCGYC	1 cut(s)	716
Hin6I	GCGC	2 cut(s)	444, 553
HinP1I	GCGC	2 cut(s)	444, 553
HincII	GTYRAC	2 cut(s)	2115, 2592
HindII	GTYRAC	2 cut(s)	2115, 2592
HindIII	AAGCTT	2 cut(s)	233, 1639
HpaI	GTTAAC	1 cut(s)	2592
HpaII	CCGG	3 cut(s)	260, 1829, 2234
HphI	GGTGA	5 cut(s)	791, 1930, 2126, 2288, 3124
Hpy188III	TCNNGA	4 cut(s)	37, 1288, 2765, 2980
Hpy99I	CGWCG	2 cut(s)	389, 2652
HpyCH4III	ACNGT	8 cut(s)	157, 441, 596, 873, 1412, 2067, 2467, 2652
HpyCH4IV	ACGT	6 cut(s)	791, 1214, 1894, 2208, 2797, 3018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	191, 634, 824, 2644, 2678
HpyF3I	CTNAG	9 cut(s)	352, 657, 753, 804, 909, 1134, 1587, 2096, 3072
HpySE526I	ACGT	6 cut(s)	791, 1214, 1894, 2208, 2797, 3018
Hsp92I	GRCGYC	1 cut(s)	716
HspAI	GCGC	2 cut(s)	444, 553
KpnI	GGTACC	1 cut(s)	2656
Ksp22I	TGATCA	2 cut(s)	2293, 2800
KspAI	GTTAAC	1 cut(s)	2592
LguI	GCTCTTC	2 cut(s)	562, 1554
LmnI	GCTCC	9 cut(s)	39, 257, 433, 451, 610, 625, 1426, 1550, 2571
Lsp1109I	GCAGC	4 cut(s)	229, 335, 1074, 1096
MaeI	CTAG	2 cut(s)	1097, 2894
MaeII	ACGT	6 cut(s)	791, 1214, 1894, 2208, 2797, 3018
MaeIII	GTNAC	8 cut(s)	503, 732, 779, 807, 1505, 1890, 2459, 3168
MfeI	CAATTG	2 cut(s)	1186, 3029
MflI	RGATCY	4 cut(s)	55, 1685, 2215, 3037
MhlI	GDGCHC	2 cut(s)	569, 2256
MmeI	TCCRAC	5 cut(s)	95, 143, 603, 1922, 3038
Mph1103I	ATGCAT	3 cut(s)	535, 1204, 1522
MroXI	GAANNNNTTC	1 cut(s)	1375
MslI	CAYNNNNRTG	3 cut(s)	1146, 1534, 3102
MspA1I	CMGCKG	1 cut(s)	1087
MspI	CCGG	3 cut(s)	260, 1829, 2234
MspR9I	CCNGG	3 cut(s)	2146, 2151, 2943
MunI	CAATTG	2 cut(s)	1186, 3029
Mva1269I	GAATGC	2 cut(s)	196, 1750
MvaI	CCWGG	3 cut(s)	2146, 2151, 2943
MwoI	GCNNNNNNNGC	5 cut(s)	191, 634, 824, 2644, 2678
NcoI	CCATGG	2 cut(s)	1239, 1681
NlaIV	GGNNCC	5 cut(s)	285, 2244, 2269, 2654, 3026
NmeAIII	GCCGAG	2 cut(s)	692, 2989
NmuCI	GTSAC	4 cut(s)	779, 1890, 2459, 3168
NsiI	ATGCAT	3 cut(s)	535, 1204, 1522
NspI	RCATGY	5 cut(s)	511, 684, 867, 2547, 3185
NspV	TTCGAA	1 cut(s)	2378
PceI	AGGCCT	1 cut(s)	2149
PciI	ACATGT	3 cut(s)	507, 863, 3181
PciSI	GCTCTTC	2 cut(s)	562, 1554
PcsI	WCGNNNNNNNCGW	2 cut(s)	153, 381
PctI	GAATGC	2 cut(s)	196, 1750
PdmI	GAANNNNTTC	1 cut(s)	1375
PflFI	GACNNNGTC	1 cut(s)	2465
PflMI	CCANNNNNTGG	1 cut(s)	2662
PkrI	GCNGC	8 cut(s)	104, 180, 244, 350, 552, 1086, 1089, 2506
Ppu21I	YACGTR	2 cut(s)	792, 2209
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	3 cut(s)	507, 863, 3181
PshBI	ATTAAT	1 cut(s)	2472
PsiI	TTATAA	1 cut(s)	1761
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	2144, 2149, 2941
PspEI	GGTNACC	1 cut(s)	779
PspGI	CCWGG	3 cut(s)	2144, 2149, 2941
PspN4I	GGNNCC	5 cut(s)	285, 2244, 2269, 2654, 3026
PspPI	GGNCC	5 cut(s)	270, 1279, 2383, 2919, 3043
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	4 cut(s)	1516, 1693, 2320, 2556
PstNI	CAGNNNCTG	3 cut(s)	1087, 2324, 2864
PsuI	RGATCY	4 cut(s)	55, 1685, 2215, 3037
PsyI	GACNNNGTC	1 cut(s)	2465
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	9 cut(s)	840, 862, 875, 1120, 1245, 1489, 1874, 2654, 2828
RsaNI	GTAC	9 cut(s)	839, 861, 874, 1119, 1244, 1488, 1873, 2653, 2827
RseI	CAYNNNNRTG	3 cut(s)	1146, 1534, 3102
SapI	GCTCTTC	2 cut(s)	562, 1554
SatI	GCNGC	8 cut(s)	103, 179, 243, 349, 551, 1085, 1088, 2505
Sau96I	GGNCC	5 cut(s)	270, 1279, 2383, 2919, 3043
ScrFI	CCNGG	3 cut(s)	2146, 2151, 2943
SduI	GDGCHC	2 cut(s)	569, 2256
SfcI	CTRYAG	6 cut(s)	769, 1512, 1689, 2247, 2316, 2552
SfuI	TTCGAA	1 cut(s)	2378
SinI	GGWCC	3 cut(s)	270, 1279, 3043
SmiMI	CAYNNNNRTG	3 cut(s)	1146, 1534, 3102
SmlI	CTYRAG	1 cut(s)	2765
SmoI	CTYRAG	1 cut(s)	2765
SseBI	AGGCCT	1 cut(s)	2149
SsiI	CCGC	5 cut(s)	102, 178, 482, 550, 2504
SspMI	CTAG	2 cut(s)	1097, 2894
StuI	AGGCCT	1 cut(s)	2149
StyD4I	CCNGG	3 cut(s)	2144, 2149, 2941
StyI	CCWWGG	3 cut(s)	1239, 1681, 2173
TaaI	ACNGT	8 cut(s)	157, 441, 596, 873, 1412, 2067, 2467, 2652
TaiI	ACGT	6 cut(s)	794, 1217, 1897, 2211, 2800, 3021
TaqI	TCGA	5 cut(s)	51, 387, 2378, 2538, 2908
TatI	WGTACW	4 cut(s)	838, 1118, 1487, 1872
TauI	GCSGC	4 cut(s)	105, 181, 553, 2507
TseFI	GTSAC	4 cut(s)	779, 1890, 2459, 3168
TseI	GCWGC	4 cut(s)	242, 348, 1084, 1087
Tsp45I	GTSAC	4 cut(s)	779, 1890, 2459, 3168
TspGWI	ACGGA	3 cut(s)	438, 1916, 2355
Tth111I	GACNNNGTC	1 cut(s)	2465
Van91I	CCANNNNNTGG	1 cut(s)	2662
VpaK11BI	GGWCC	3 cut(s)	270, 1279, 3043
VspI	ATTAAT	1 cut(s)	2472
XagI	CCTNNNNNAGG	1 cut(s)	2552
XapI	RAATTY	4 cut(s)	40, 380, 845, 2751
XceI	RCATGY	5 cut(s)	511, 684, 867, 2547, 3185
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	1 cut(s)	1375
XspI	CTAG	2 cut(s)	1097, 2894
Zsp2I	ATGCAT	3 cut(s)	535, 1204, 1522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.