Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Forward (+)

27328159 .. 27330305

Gene Structure 2147 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGGGCGTCGTCTCTTCGCCTGCTTTGGAAAAGGCCTCTCCTCTTCCCCCTCCTCCTCGGCCGCGCATGAGAAACACACGTCAGCGGCTACAGCTGACGTGTCGGCCGAGGAGCAGAGGAAGAGCGGGCCGGTGCTGGTGGAGCTGTTTTCGTCGCAGGGCTGCACCACCTCGCCGGTGGCGGAGCTGCTTCTGTCGAGGCTTGGGAGGGGGGATTTCAACGGGAGTGACGTGCCTCCAGTGGTGGTGCTGGCGTACCACGTGGACTACTGGGACTACATGGGGTGGAAGGACCCGTACGGTTCGAGCCAGTGGACCGTTCGGCAAAAGGCTTATATTGAGGCCTTGAGGTTGGACACCATGTTCACGCCTCAGGTGGTGGTTCAAGGTACGGCTCAATGTGTTGGCAACGATGAGAATGATTTGCTAACCTCCATCAAGCAGGCACCCAGATATGCTGCACCCACATTCCAGGCAACTTTCGAAAGACCGTCCCCAGACTCGTTGCAAGTATCTCTAACAGGAGCTTTAAGGACAAAGGTGGATAGCAATGCCGCCAATGTGATGGTGGCGCTCTATGAAAGTGGGCTAGTCACTGACTGCCCCTCGGGAGAGAACAAAGGACGCGTCCTGTCCAACGACTATGTTGTTCGAAGACTCGAAAAGCTCTGCACAGTTAAGGACGTCCCAGCCAAGAAGACCATTTCAGGGACTATTACCTTCCCATTATGGCAAAGTTTCAATGCCACAAAATGTGGGATGGTCGTCTTCATTCAAAACAGCTCGCATCAAATTTTTGGTTCTCAGAAGTTTCAGCTGCCGGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

276

Amino Acids

30.1

Weight (kDa)

7.59

Isoelectric Point (pI)

48.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1223	PF06764	46 - 259	6.4e-66	Protein of unknown function (DUF1223)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	687
AccB1I	GGYRCC	1 cut(s)	445
AccBSI	CCGCTC	1 cut(s)	126
AccII	CGCG	2 cut(s)	65, 627
AciI	CCGC	5 cut(s)	63, 86, 126, 182, 555
AcoI	YGGCCR	2 cut(s)	60, 105
AcsI	RAATTY	1 cut(s)	792
AcvI	CACGTG	1 cut(s)	262
AcyI	GRCGYC	2 cut(s)	7, 684
AfaI	GTAC	3 cut(s)	257, 299, 391
AfiI	CCNNNNNNNGG	1 cut(s)	708
AflIII	ACRYGT	3 cut(s)	78, 99, 625
AgsI	TTSAA	4 cut(s)	220, 386, 742, 776
AjiI	CACGTC	3 cut(s)	81, 100, 232
AjnI	CCWGG	1 cut(s)	471
AloI	GAACNNNNNNTCC	2 cut(s)	347, 379
AluBI	AGCT	7 cut(s)	95, 145, 187, 527, 667, 783, 817
AluI	AGCT	7 cut(s)	95, 145, 187, 527, 667, 783, 817
Alw26I	GTCTC	1 cut(s)	17
Ama87I	CYCGRG	1 cut(s)	607
AoxI	GGCC	5 cut(s)	34, 60, 105, 128, 342
ApeKI	GCWGC	4 cut(s)	162, 187, 458, 817
ApoI	RAATTY	1 cut(s)	792
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
AspLEI	GCGC	2 cut(s)	67, 574
AspS9I	GGNCC	3 cut(s)	128, 292, 315
AsuII	TTCGAA	2 cut(s)	483, 652
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	2 cut(s)	292, 315
AxyI	CCTNAGG	1 cut(s)	372
BanI	GGYRCC	1 cut(s)	445
BarI	GAAGNNNNNNTAC	2 cut(s)	281, 313
BbrPI	CACGTG	1 cut(s)	262
BbsI	GAAGAC	3 cut(s)	661, 704, 760
BbvI	GCAGC	4 cut(s)	149, 174, 445, 804
BccI	CCATC	3 cut(s)	443, 559, 754
BceAI	ACGGC	1 cut(s)	408
BciT130I	CCWGG	1 cut(s)	473
BcoDI	GTCTC	1 cut(s)	17
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	90
BfoI	RGCGCY	1 cut(s)	575
BisI	GCNGC	7 cut(s)	63, 87, 163, 188, 459, 555, 818
BlsI	GCNGC	7 cut(s)	64, 88, 164, 189, 460, 556, 819
Bme1390I	CCNGG	1 cut(s)	473
Bme18I	GGWCC	2 cut(s)	292, 315
BmeT110I	CYCGRG	1 cut(s)	607
BmgBI	CACGTC	3 cut(s)	81, 100, 232
BmgT120I	GGNCC	3 cut(s)	128, 292, 315
BmiI	GGNNCC	2 cut(s)	294, 447
BmrFI	CCNGG	1 cut(s)	473
BmrI	ACTGGG	1 cut(s)	280
BmsI	GCATC	1 cut(s)	796
BmuI	ACTGGG	1 cut(s)	280
BpiI	GAAGAC	3 cut(s)	661, 704, 760
BpmI	CTGGAG	1 cut(s)	222
Bpu14I	TTCGAA	2 cut(s)	483, 652
BpuEI	CTTGAG	1 cut(s)	367
BsaAI	YACGTR	1 cut(s)	262
BsaHI	GRCGYC	2 cut(s)	7, 684
BsaJI	CCNNGG	3 cut(s)	57, 108, 606
Bsc4I	CCNNNNNNNGG	1 cut(s)	708
Bse118I	RCCGGY	2 cut(s)	130, 175
Bse1I	ACTGG	3 cut(s)	239, 275, 310
Bse21I	CCTNAGG	1 cut(s)	372
Bse3DI	GCAATG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	473
BseDI	CCNNGG	3 cut(s)	57, 108, 606
BseGI	GGATG	1 cut(s)	765
BseLI	CCNNNNNNNGG	1 cut(s)	708
BseMI	GCAATG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	386, 818
BseNI	ACTGG	3 cut(s)	239, 275, 310
BseRI	GAGGAG	4 cut(s)	31, 43, 46, 125
BseX3I	CGGCCG	2 cut(s)	60, 105
BseXI	GCAGC	4 cut(s)	149, 174, 445, 804
BseYI	CCCAGC	1 cut(s)	688
BsgI	GTGCAG	3 cut(s)	148, 444, 655
Bsh1236I	CGCG	2 cut(s)	65, 627
Bsh1285I	CGRYCG	2 cut(s)	63, 108
BshFI	GGCC	5 cut(s)	36, 62, 107, 130, 344
BshNI	GGYRCC	1 cut(s)	445
BsiEI	CGRYCG	2 cut(s)	63, 108
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	3 cut(s)	131, 176, 821
BsiWI	CGTACG	1 cut(s)	297
BslFI	GGGAC	4 cut(s)	287, 478, 671, 724
BslI	CCNNNNNNNGG	1 cut(s)	708
BsmAI	GTCTC	1 cut(s)	17
BsmBI	CGTCTC	1 cut(s)	17
BsmFI	GGGAC	4 cut(s)	287, 478, 671, 724
BsnI	GGCC	5 cut(s)	36, 62, 107, 130, 344
BsoBI	CYCGRG	1 cut(s)	607
Bsp119I	TTCGAA	2 cut(s)	483, 652
BspACI	CCGC	5 cut(s)	63, 86, 126, 182, 555
BspANI	GGCC	5 cut(s)	36, 62, 107, 130, 344
BspCNI	CTCAG	2 cut(s)	385, 817
BspFNI	CGCG	2 cut(s)	65, 627
BspLI	GGNNCC	2 cut(s)	294, 447
BspQI	GCTCTTC	1 cut(s)	116
BspT104I	TTCGAA	2 cut(s)	483, 652
BspT107I	GGYRCC	1 cut(s)	445
BsrBI	CCGCTC	1 cut(s)	126
BsrDI	GCAATG	1 cut(s)	556
BsrFI	RCCGGY	2 cut(s)	130, 175
BsrI	ACTGG	3 cut(s)	239, 275, 310
BssAI	RCCGGY	2 cut(s)	130, 175
BssECI	CCNNGG	3 cut(s)	57, 108, 606
BssNI	GRCGYC	2 cut(s)	7, 684
Bst2UI	CCWGG	1 cut(s)	473
Bst4CI	ACNGT	4 cut(s)	302, 319, 492, 676
Bst6I	CTCTTC	3 cut(s)	20, 49, 116
BstACI	GRCGYC	2 cut(s)	7, 684
BstBAI	YACGTR	1 cut(s)	262
BstBI	TTCGAA	2 cut(s)	483, 652
BstC8I	GCNNGC	5 cut(s)	22, 128, 252, 444, 785
BstDEI	CTNAG	2 cut(s)	372, 804
BstF5I	GGATG	1 cut(s)	765
BstFNI	CGCG	2 cut(s)	65, 627
BstH2I	RGCGCY	1 cut(s)	575
BstHHI	GCGC	2 cut(s)	67, 574
BstMAI	GTCTC	1 cut(s)	17
BstMCI	CGRYCG	2 cut(s)	63, 108
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 142
BstNI	CCWGG	1 cut(s)	473
BstSCI	CCNGG	1 cut(s)	471
BstSFI	CTRYAG	1 cut(s)	90
BstUI	CGCG	2 cut(s)	65, 627
BstV1I	GCAGC	4 cut(s)	149, 174, 445, 804
BstV2I	GAAGAC	3 cut(s)	661, 704, 760
BstXI	CCANNNNNNTGG	1 cut(s)	565
BstZI	CGGCCG	2 cut(s)	60, 105
Bsu36I	CCTNAGG	1 cut(s)	372
BsuRI	GGCC	5 cut(s)	36, 62, 107, 130, 344
BtrI	CACGTC	3 cut(s)	81, 100, 232
BtsCI	GGATG	1 cut(s)	765
BtsIMutI	CAGTG	3 cut(s)	246, 317, 594
Cac8I	GCNNGC	5 cut(s)	22, 128, 252, 444, 785
CfoI	GCGC	2 cut(s)	67, 574
Cfr10I	RCCGGY	2 cut(s)	130, 175
Cfr13I	GGNCC	3 cut(s)	128, 292, 315
CseI	GACGC	2 cut(s)	616, 633
Csp6I	GTAC	3 cut(s)	256, 298, 390
CviAII	CATG	3 cut(s)	68, 280, 361
CviQI	GTAC	3 cut(s)	256, 298, 390
DdeI	CTNAG	2 cut(s)	372, 804
EaeI	YGGCCR	2 cut(s)	60, 105
EagI	CGGCCG	2 cut(s)	60, 105
Eam1104I	CTCTTC	3 cut(s)	20, 49, 116
EarI	CTCTTC	3 cut(s)	20, 49, 116
EciI	GGCGGA	1 cut(s)	197
EclXI	CGGCCG	2 cut(s)	60, 105
Eco147I	AGGCCT	2 cut(s)	36, 344
Eco47I	GGWCC	2 cut(s)	292, 315
Eco52I	CGGCCG	2 cut(s)	60, 105
Eco72I	CACGTG	1 cut(s)	262
Eco81I	CCTNAGG	1 cut(s)	372
Eco88I	CYCGRG	1 cut(s)	607
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	471
Esp3I	CGTCTC	1 cut(s)	17
FaeI	CATG	3 cut(s)	71, 283, 364
FaiI	YATR	8 cut(s)	69, 281, 336, 362, 456, 579, 645, 730
FaqI	GGGAC	4 cut(s)	287, 478, 671, 724
FatI	CATG	3 cut(s)	67, 279, 360
FauI	CCCGC	1 cut(s)	119
Fnu4HI	GCNGC	7 cut(s)	63, 87, 163, 188, 459, 555, 818
FokI	GGATG	1 cut(s)	772
Fsp4HI	GCNGC	7 cut(s)	63, 87, 163, 188, 459, 555, 818
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	2 cut(s)	66, 573
GluI	GCNGC	7 cut(s)	63, 87, 163, 188, 459, 555, 818
GsaI	CCCAGC	1 cut(s)	692
GsuI	CTGGAG	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	575
HaeIII	GGCC	5 cut(s)	36, 62, 107, 130, 344
HapII	CCGG	3 cut(s)	131, 176, 821
HgaI	GACGC	2 cut(s)	616, 633
HhaI	GCGC	2 cut(s)	67, 574
Hin1I	GRCGYC	2 cut(s)	7, 684
Hin1II	CATG	3 cut(s)	71, 283, 364
Hin6I	GCGC	2 cut(s)	65, 572
HinP1I	GCGC	2 cut(s)	65, 572
HinfI	GANTC	2 cut(s)	500, 657
HpaII	CCGG	3 cut(s)	131, 176, 821
Hpy166II	GTNNAC	3 cut(s)	265, 315, 366
Hpy188I	TCNGA	1 cut(s)	807
Hpy188III	TCNNGA	1 cut(s)	609
Hpy8I	GTNNAC	3 cut(s)	265, 315, 366
Hpy99I	CGWCG	2 cut(s)	12, 157
HpyAV	CCTTC	2 cut(s)	283, 730
HpyCH4III	ACNGT	4 cut(s)	302, 319, 492, 676
HpyCH4IV	ACGT	5 cut(s)	80, 99, 231, 261, 684
HpyCH4V	TGCA	4 cut(s)	165, 461, 508, 672
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 142
HpyF3I	CTNAG	2 cut(s)	372, 804
HpySE526I	ACGT	5 cut(s)	80, 99, 231, 261, 684
Hsp92I	GRCGYC	2 cut(s)	7, 684
Hsp92II	CATG	3 cut(s)	71, 283, 364
HspAI	GCGC	2 cut(s)	65, 572
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	4 cut(s)	112, 142, 184, 524
Lsp1109I	GCAGC	4 cut(s)	149, 174, 445, 804
LweI	GCATC	1 cut(s)	796
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	5 cut(s)	80, 99, 231, 261, 684
MaeIII	GTNAC	2 cut(s)	227, 592
MbiI	CCGCTC	1 cut(s)	126
MboII	GAAGA	6 cut(s)	7, 36, 133, 666, 709, 760
MluCI	AATT	2 cut(s)	792, 826
MluI	ACGCGT	1 cut(s)	625
MlyI	GAGTC	2 cut(s)	494, 651
MmeI	TCCRAC	2 cut(s)	333, 660
MseI	TTAA	2 cut(s)	530, 678
MspA1I	CMGCKG	3 cut(s)	86, 95, 817
MspI	CCGG	3 cut(s)	131, 176, 821
MspR9I	CCNGG	1 cut(s)	473
MvaI	CCWGG	1 cut(s)	473
MvnI	CGCG	2 cut(s)	65, 627
MwoI	GCNNNNNNNGC	2 cut(s)	92, 142
NlaIII	CATG	3 cut(s)	71, 283, 364
NlaIV	GGNNCC	2 cut(s)	294, 447
NmeAIII	GCCGAG	2 cut(s)	38, 133
NmuCI	GTSAC	2 cut(s)	227, 592
NspV	TTCGAA	2 cut(s)	483, 652
PceI	AGGCCT	2 cut(s)	36, 344
PciSI	GCTCTTC	1 cut(s)	116
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 228
Pfl23II	CGTACG	1 cut(s)	297
PkrI	GCNGC	7 cut(s)	64, 88, 164, 189, 460, 556, 819
PleI	GAGTC	2 cut(s)	494, 651
PmaCI	CACGTG	1 cut(s)	262
PmlI	CACGTG	1 cut(s)	262
PpsI	GAGTC	2 cut(s)	494, 651
Ppu21I	YACGTR	1 cut(s)	262
PpuMI	RGGWCCY	1 cut(s)	292
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	471
PspCI	CACGTG	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	471
PspLI	CGTACG	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	294, 447
PspPI	GGNCC	3 cut(s)	128, 292, 315
PspPPI	RGGWCCY	1 cut(s)	292
PvuII	CAGCTG	2 cut(s)	95, 817
RsaI	GTAC	3 cut(s)	257, 299, 391
RsaNI	GTAC	3 cut(s)	256, 298, 390
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	2 cut(s)	530, 678
SatI	GCNGC	7 cut(s)	63, 87, 163, 188, 459, 555, 818
Sau96I	GGNCC	3 cut(s)	128, 292, 315
SchI	GAGTC	2 cut(s)	494, 651
ScrFI	CCNGG	1 cut(s)	473
SfaNI	GCATC	1 cut(s)	796
SfcI	CTRYAG	1 cut(s)	90
SfuI	TTCGAA	2 cut(s)	483, 652
SgrAI	CRCCGGYG	1 cut(s)	175
SinI	GGWCC	2 cut(s)	292, 315
SmlI	CTYRAG	1 cut(s)	346
SmoI	CTYRAG	1 cut(s)	346
Sse9I	AATT	2 cut(s)	792, 826
SseBI	AGGCCT	2 cut(s)	36, 344
SsiI	CCGC	5 cut(s)	63, 86, 126, 182, 555
SspMI	CTAG	1 cut(s)	590
StuI	AGGCCT	2 cut(s)	36, 344
StyD4I	CCNGG	1 cut(s)	471
TaaI	ACNGT	4 cut(s)	302, 319, 492, 676
TaiI	ACGT	5 cut(s)	83, 102, 234, 264, 687
TaqI	TCGA	5 cut(s)	197, 305, 483, 652, 660
TasI	AATT	2 cut(s)	792, 826
TauI	GCSGC	3 cut(s)	65, 89, 557
Tru1I	TTAA	2 cut(s)	530, 678
Tru9I	TTAA	2 cut(s)	530, 678
TscAI	CASTG	3 cut(s)	246, 317, 601
TseFI	GTSAC	2 cut(s)	227, 592
TseI	GCWGC	4 cut(s)	162, 187, 458, 817
Tsp45I	GTSAC	2 cut(s)	227, 592
TspDTI	ATGAA	2 cut(s)	594, 760
TspRI	CASTG	3 cut(s)	246, 317, 601
VpaK11BI	GGWCC	2 cut(s)	292, 315
XapI	RAATTY	1 cut(s)	792
XcmI	CCANNNNNNNNNTGG	2 cut(s)	175, 565
XspI	CTAG	1 cut(s)	590
ZraI	GACGTC	1 cut(s)	685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.