Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

48841378 .. 48852564

Gene Structure 11187 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG325500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3672 bp

ATGGCTGTGGACACCAATTTCGCATCCTCATTGCTCCAGAATCTGAAGCTCGAAGATCCATTGCTTCCTCCAACCACATGGGAATCCATCCCTTCCGAAAGCGGCCATTTCCATCTTCCAACCTCCACCTCTCACTCCCTCTACCACGCCTCCACCGTCTCCGAGGCGAGTCTGGTGCGGCTGGCGATGAATGCACTGCAAGGAGTTGAATCCTCCCTTATTAGTGTCCAAAAGCTTTCTGCTGCGTTTCGCTCCGATCCGGCTGATAGGACCTTCCATCAGGTTCCCAGTCTGTGGAGTAGGTCTTCCAGCACTCATGCTCTGGGGAATGTTCTCCACCCCATAGGCTGCTCAGGTTTGCTGGTCTTTCTTCTCGGAAAATTCGTCGATTACTTTACCGATTTGAATGTGGATGGTCAAAATGAAGCTCCACCAAAACAGTGCGCTCCGTATAGTCTTGTTAATCATGCTTTTGCTGTTGCGGTGGGGAAGGTTGTGGAGGGTTACATGTGTGCTTTGGATACCTTGTATGCATCTGTGGGTGTGAGGCGGCGCTCTTCTTCGGGCTCGCCTTCTGCCGTGGGATGTCTCAACAGTGTAGTCCATTCGGAGCTTACGTTGTTGGAGCTGTATCTGCACACAAAGGAATTGAGGACTCAGATTGAATCCCTTACAAACATATGCAACTTATATCAGTTTTCTGATTGCTTCTCGGCGTCTTCTTTTGATGAGTTACTTACGAAAGCCAAATCTGAGTTTTGTAAATTCTACAGAGGGGGTGACCTACTCACGTATCTGTATACTCAGTTACAGGTTGCTGATCCTGCTCATCGTCCTGTACTAAAATTTCTTTTTCTTCGTACATGTGAACCATACTTCGGATTTATAAGATCATGGATATTCAAAGCTGAGATTAGCGATCCTTATGAGGAGTTTTTGGTTGAATATGTTCACTCTCCTAATCCATCTGTTAAAGCTGGTATCTCTATTGACTTCCCATTGGCAACTATTAGGGAACGAGATGGAGTTCCTGTTCCTTGTTTTTTGAAGGACTTCTTGATTCCACTTTTCAGAGCTGGTCAGCAGCTGCAAGTTCTAGCGAAATTGCTTGAATTGTGTACTTTTGTTGCCCCTAAGAACCATACTCATGAGAGTTTTCTTCCCTGCTGGAGTGGGTTTTCAAGCAATTGTCCATCTTATGCATCTCCATTGACGTTCAGCAAAGGAAATATAGAGGCCATGGTACTTTCAAGGGAATGTTATTACAAAAGGATGCAGGACCAACTCCAGAATCTTTTGACGGAATTAGAGTTCAGATTTCAACAGGTGGTTTGTTGTGGTAGTTTAGTTTTTTCAGATGGAACTTGTGCTTTCTCCTATTTTATTAAAAATGTAATTTCACAAGACACACTGCCTGTTCTCTTGGATAATAGTGGAAGGAGTTCAAACATCCCAGTTTTAGTCCCACTGGATGACAGTTTTATTGCTCCTTCAACAGATGATGAAAGGGAGTCAAATGTGGTGGCTGATGATTTGGATTCATACGAGTTATGTACAAGAGACAATGTATGTTACACTGCAGATGCATACGAGTCATCTGAATGTTCAAGCTCCACTATATCTGAAGAGCAAAATGTGTTCGAGCAGATGACTGAGTTCCCTAATCACATTGTAGGGGAAGAAGAAAAGTATTTATCTGCTTTAAGCTTCTCAATGAGTATTCCAGTTGATACTTTGCAAAAGCCCCATGGATCTGCAGATTCATGTCATATAGACAAGATTAGTAGAAGTTGTGAAAGAAAAGATGCCTTTGGGCATTCTCATTATAAAGGCATACTTACGAGTCAGATATTGGATGTTCAATTTTCAGATTGTCTCTCTGATAAGGATTGGCTGGAAAGAGATTATTTTGAGAATCAGTCTGTCATTGATATAGAGTACAAAGAAGGTCTGAAGTCACGTCCAACGGACTTTGCCTCAAAGGTGAATGAAAGAATAATGGGATCGTTAAAGGAAGGTTCATCATATTTTAGAAAAAGAATCATGGATAGTAATGCTTTAATAGAAGAAGCCTTTGGCAAGGTTGAACCTCAAAAGCATTTGGATAGTAATACTTCTGATACATTTGCATTACAACAGTGGAAGGTTAATTACCATAACAATTTTCTCAGCATGAACCCAATGTTGACAAAAAATAATTTCCTTCACCTAACATCCAGGCCTGGAGAGAGATGCAAGACAGACCTTGGGGATTCTTTGGCTTACTTTGATTTCTCTCACATAAAAGATCCTTGTAAGGTGTTTCCGGTAAAGGTTCCTGTAGGGCTCATGAACTCTGGTGCCTCTACTACCACTGTTAGGAGTGATCACCATCTGAAACAATGTTCTGCAGAAGCTGATATTCTGATTGGAAGAACAATAGTATCTGACTCTCTTCTGTCTTCAGATTCGAAGGGCCACACCAAAGGAGATGCTACTTTAACAAATGTTTCTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCATTAATAGAGTTGAAGATCACAGAGAAAGCTTGGCGGCCACTTTTGACATACCACTTGATTTTATTATCGACACATGCCTTCTGCAGGAAATCATGCTCCAATATAAGTATGTCAGCAAGTTAACTATTAAGTTGCTTGAAGAAGGATTTGATTTGCAAGAACATTTGCTGGCTCTGCGACGGTACCACTTCATGGAATTAGCAGACTGGGCAGATTTGTTTATTATGTCCCTTTGGCATCATAAATGGAGTATTACACAGGCAGATCATAGACTTTCCGAAATTCAAAGTTTTCTTGAGTCATCAGTTCAGAGGTCATCATGTGAACGTGATCATAATAAGGACAGGTTATTTGTGTACCTGAAAGGACATGATGCAGTGCCTCTTTCAGCATCTGCTATTGGAGTCCATTCCTTCAACTTTCTAGGTTTGGGTTATCGAGTGGACTGGCCCATCAGCATTGTTTTGACTCCTGCTGCATTGAAAATATATGCCGAGATATTCAGTTTCTTGATACAAGTGAAACTTGCTCTGTTTTCATTGACTGACGTGTGGTGCCAATTGAAGGATCTGGTCCAGTTGATTAGTCGGAATAACCACTCTGAGCAACATGAAAAGGAAGTGAGTCATTTCAATGCAATGGTGAAAATGAGGCATCAGGTCAATCACTTTGTATCTACATTACAGCAATATGTGGAGTCACAGCTATCACATGTATCATGGTGCAGGTTTCTATATTCACTTAAGCATAAGGTCAAAGATATGATGGATCTTCAGTCAGTGCACATGGCATATCTCTCAGATTCACTTCACATATGTTTCCTCTCTGATGAAACAAGACCTATAGCTTGCATCATTGAGAGCATTCTGCAGTGTGCTCTGGACTTCAGGTCTTGTCTCACTGGGGAAGTATGGAATGCAGGAACAGGTCAAGGGAATTTAATTGCAAGACACTCTGGAATCAATATATCCCAGGTTCTTTCCATAAAGCAAACGTTTGACAAAAATATGAAAGAATTGCACTTGTGTTACCTCAGATCACCTAAACATGGCGAGTTTGGACTCTCTCACTTCTGGGAATACCTGAACTACAACAAGTATTACTCAGATGCTGCTTCCAAAGCTCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

1223

Amino Acids

138.05

Weight (kDa)

5.72

Isoelectric Point (pI)

47.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	63 - 373	1.1e-22	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	899 - 1215	2.7e-62	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	887, 1827
Acc36I	ACCTGC	1 cut(s)	3258
Acc65I	GGTACC	1 cut(s)	2724
AccB1I	GGYRCC	3 cut(s)	2339, 2724, 3096
AccB7I	CCANNNNNTGG	2 cut(s)	294, 2734
AccI	GTMKAC	1 cut(s)	800
AciI	CCGC	5 cut(s)	102, 178, 482, 550, 2576
AclI	AACGTT	1 cut(s)	3536
AclWI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2282, 3117, 3318
AcoI	YGGCCR	2 cut(s)	103, 2577
AcsI	RAATTY	5 cut(s)	380, 764, 845, 2823, 3478
AcuI	CTGAAG	6 cut(s)	65, 1644, 1973, 2427, 3299, 3412
AcyI	GRCGYC	1 cut(s)	716
AfaI	GTAC	8 cut(s)	840, 862, 1120, 1245, 1555, 1940, 2726, 2900
AfiI	CCNNNNNNNGG	7 cut(s)	294, 878, 2358, 2626, 2734, 3106, 3590
AflII	CTTAAG	1 cut(s)	3284
AflIII	ACRYGT	4 cut(s)	507, 863, 3090, 3253
AhdI	GACNNNNNGTC	1 cut(s)	3430
AjiI	CACGTC	2 cut(s)	1961, 3091
AjnI	CCWGG	3 cut(s)	2216, 2221, 3513
AjuI	GAANNNNNNNTTGG	2 cut(s)	2058, 2090
AloI	GAACNNNNNNTCC	4 cut(s)	1017, 1049, 1295, 1327
Alw21I	GWGCWC	2 cut(s)	3327, 3421
Alw26I	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3443
Alw44I	GTGCAC	1 cut(s)	3323
AlwI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2282, 3117, 3318
AlwNI	CAGNNNCTG	5 cut(s)	43, 1087, 2396, 2936, 3653
AoxI	GGCC	6 cut(s)	103, 1236, 2219, 2455, 2577, 2990
ApaLI	GTGCAC	1 cut(s)	3323
ApeKI	GCWGC	6 cut(s)	242, 348, 1084, 1087, 3017, 3653
ApoI	RAATTY	5 cut(s)	380, 764, 845, 2823, 3478
ArsI	GACNNNNNNTTYG	3 cut(s)	34, 2876, 2908
AseI	ATTAAT	1 cut(s)	2544
Asp700I	GAANNNNTTC	3 cut(s)	948, 1052, 1441
Asp718I	GGTACC	1 cut(s)	2724
AspLEI	GCGC	2 cut(s)	446, 555
AspS9I	GGNCC	5 cut(s)	270, 1279, 2455, 2991, 3115
AsuHPI	GGTGA	6 cut(s)	791, 1996, 2198, 2360, 3196, 3573
AsuII	TTCGAA	1 cut(s)	2450
AvaII	GGWCC	3 cut(s)	270, 1279, 3115
BaeGI	GKGCMC	1 cut(s)	3327
BaeI	ACNNNNGTAYC	4 cut(s)	776, 809, 2406, 2439
BanI	GGYRCC	3 cut(s)	2339, 2724, 3096
BanII	GRGCYC	2 cut(s)	569, 2328
BarI	GAAGNNNNNNTAC	2 cut(s)	2135, 2167
BbsI	GAAGAC	3 cut(s)	297, 711, 2433
Bbv12I	GWGCWC	2 cut(s)	3327, 3421
BbvI	GCAGC	6 cut(s)	229, 335, 1074, 1096, 3004, 3640
BceAI	ACGGC	1 cut(s)	563
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	3 cut(s)	2218, 2223, 3515
BciVI	GTATCC	1 cut(s)	514
BclI	TGATCA	2 cut(s)	2365, 2872
BcoDI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3443
BfaI	CTAG	2 cut(s)	1097, 2966
BfmI	CTRYAG	8 cut(s)	769, 1578, 1755, 2319, 2388, 2624, 3384, 3410
BfoI	RGCGCY	1 cut(s)	556
BfrI	CTTAAG	1 cut(s)	3284
BfuAI	ACCTGC	1 cut(s)	3258
BfuI	GTATCC	1 cut(s)	514
Bme1390I	CCNGG	3 cut(s)	2218, 2223, 3515
Bme18I	GGWCC	3 cut(s)	270, 1279, 3115
BmeRI	GACNNNNNGTC	1 cut(s)	3430
BmgBI	CACGTC	2 cut(s)	1961, 3091
BmgT120I	GGNCC	5 cut(s)	270, 1279, 2455, 2991, 3115
BmiI	GGNNCC	5 cut(s)	285, 2316, 2341, 2726, 3098
BmrFI	CCNGG	3 cut(s)	2218, 2223, 3515
BmrI	ACTGGG	4 cut(s)	282, 1448, 2758, 3453
BmuI	ACTGGG	4 cut(s)	282, 1448, 2758, 3453
BpiI	GAAGAC	3 cut(s)	297, 711, 2433
BpmI	CTGGAG	4 cut(s)	20, 1189, 1271, 2244
Bpu10I	CCTNAGC	1 cut(s)	352
Bpu14I	TTCGAA	1 cut(s)	2450
BpuEI	CTTGAG	1 cut(s)	2858
BsaAI	YACGTR	1 cut(s)	792
BsaBI	GATNNNNATC	1 cut(s)	2370
BsaHI	GRCGYC	1 cut(s)	716
BsaJI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2245, 3513
BsaWI	WCCGGW	1 cut(s)	2305
BsaXI	ACNNNNNCTCC	6 cut(s)	134, 164, 602, 632, 1017, 1047
Bsc4I	CCNNNNNNNGG	7 cut(s)	294, 878, 2358, 2626, 2734, 3106, 3590
Bse1I	ACTGG	8 cut(s)	288, 1454, 1473, 1724, 2753, 2993, 3118, 3448
Bse3DI	GCAATG	3 cut(s)	29, 59, 3186
Bse8I	GATNNNNATC	1 cut(s)	2370
BseBI	CCWGG	3 cut(s)	2218, 2223, 3515
BseDI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2245, 3513
BseGI	GGATG	9 cut(s)	23, 87, 418, 590, 1278, 1449, 1477, 1861, 2213
BseJI	GATNNNNATC	1 cut(s)	2370
BseLI	CCNNNNNNNGG	7 cut(s)	294, 878, 2358, 2626, 2734, 3106, 3590
BseMI	GCAATG	3 cut(s)	29, 59, 3186
BseNI	ACTGG	8 cut(s)	288, 1454, 1473, 1724, 2753, 2993, 3118, 3448
BseRI	GAGGAG	1 cut(s)	944
BseSI	GKGCMC	1 cut(s)	3327
BseXI	GCAGC	6 cut(s)	229, 335, 1074, 1096, 3004, 3640
BsgI	GTGCAG	2 cut(s)	620, 3286
BshFI	GGCC	6 cut(s)	105, 1238, 2221, 2457, 2579, 2992
BshNI	GGYRCC	3 cut(s)	2339, 2724, 3096
BsiHKAI	GWGCWC	2 cut(s)	3327, 3421
BsiSI	CCGG	2 cut(s)	260, 2306
BslFI	GGGAC	2 cut(s)	1448, 2755
BslI	CCNNNNNNNGG	7 cut(s)	294, 878, 2358, 2626, 2734, 3106, 3590
BsmAI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3443
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	1448, 2755
BsmI	GAATGC	4 cut(s)	196, 1816, 3405, 3463
BsnI	GGCC	6 cut(s)	105, 1238, 2221, 2457, 2579, 2992
Bsp119I	TTCGAA	1 cut(s)	2450
Bsp1286I	GDGCHC	4 cut(s)	569, 2328, 3327, 3421
Bsp1407I	TGTACA	1 cut(s)	1553
Bsp19I	CCATGG	2 cut(s)	1239, 1747
BspACI	CCGC	5 cut(s)	102, 178, 482, 550, 2576
BspANI	GGCC	6 cut(s)	105, 1238, 2221, 2457, 2579, 2992
BspHI	TCATGA	2 cut(s)	1147, 2328
BspLI	GGNNCC	5 cut(s)	285, 2316, 2341, 2726, 3098
BspMAI	CTGCAG	5 cut(s)	1582, 1759, 2392, 2628, 3414
BspMI	ACCTGC	1 cut(s)	3258
BspPI	GGATC	9 cut(s)	50, 251, 815, 914, 1759, 2011, 2282, 3117, 3318
BspQI	GCTCTTC	2 cut(s)	562, 1620
BspT104I	TTCGAA	1 cut(s)	2450
BspT107I	GGYRCC	3 cut(s)	2339, 2724, 3096
BspTI	CTTAAG	1 cut(s)	3284
BsrDI	GCAATG	3 cut(s)	29, 59, 3186
BsrGI	TGTACA	1 cut(s)	1553
BsrI	ACTGG	8 cut(s)	288, 1454, 1473, 1724, 2753, 2993, 3118, 3448
BssECI	CCNNGG	6 cut(s)	162, 579, 1239, 1747, 2245, 3513
BssNAI	GTATAC	1 cut(s)	801
BssNI	GRCGYC	1 cut(s)	716
BssT1I	CCWWGG	3 cut(s)	1239, 1747, 2245
Bst1107I	GTATAC	1 cut(s)	801
Bst2UI	CCWGG	3 cut(s)	2218, 2223, 3515
Bst4CI	ACNGT	8 cut(s)	157, 441, 596, 1478, 2139, 2356, 2539, 2724
Bst6I	CTCTTC	3 cut(s)	562, 1620, 2439
BstACI	GRCGYC	1 cut(s)	716
BstAFI	CTTAAG	1 cut(s)	3284
BstAUI	TGTACA	1 cut(s)	1553
BstBAI	YACGTR	1 cut(s)	792
BstBI	TTCGAA	1 cut(s)	2450
BstC8I	GCNNGC	4 cut(s)	183, 569, 2712, 3391
BstDSI	CCRYGG	3 cut(s)	579, 1239, 1747
BstEII	GGTNACC	1 cut(s)	779
BstENI	CCTNNNNNAGG	1 cut(s)	2624
BstF5I	GGATG	9 cut(s)	23, 87, 418, 590, 1278, 1449, 1477, 1861, 2213
BstH2I	RGCGCY	1 cut(s)	556
BstHHI	GCGC	2 cut(s)	446, 555
BstMAI	GTCTC	5 cut(s)	163, 593, 1554, 1880, 3443
BstMWI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2716, 2750, 3662
BstNI	CCWGG	3 cut(s)	2218, 2223, 3515
BstNSI	RCATGY	4 cut(s)	511, 867, 2619, 3257
BstPI	GGTNACC	1 cut(s)	779
BstSCI	CCNGG	3 cut(s)	2216, 2221, 3513
BstSFI	CTRYAG	8 cut(s)	769, 1578, 1755, 2319, 2388, 2624, 3384, 3410
BstSLI	GKGCMC	1 cut(s)	3327
BstV1I	GCAGC	6 cut(s)	229, 335, 1074, 1096, 3004, 3640
BstV2I	GAAGAC	3 cut(s)	297, 711, 2433
BstX2I	RGATCY	5 cut(s)	55, 1751, 2287, 3109, 3310
BstXI	CCANNNNNNTGG	1 cut(s)	78
BstYI	RGATCY	5 cut(s)	55, 1751, 2287, 3109, 3310
BstZ17I	GTATAC	1 cut(s)	801
BsuI	GTATCC	1 cut(s)	514
BsuRI	GGCC	6 cut(s)	105, 1238, 2221, 2457, 2579, 2992
BtgI	CCRYGG	3 cut(s)	579, 1239, 1747
BtgZI	GCGATG	1 cut(s)	200
BtrI	CACGTC	2 cut(s)	1961, 3091
BtsCI	GGATG	9 cut(s)	23, 87, 418, 590, 1278, 1449, 1477, 1861, 2213
BtsI	GCAGTG	5 cut(s)	194, 1409, 1575, 2925, 3419
BveI	ACCTGC	1 cut(s)	3258
Cac8I	GCNNGC	4 cut(s)	183, 569, 2712, 3391
CaiI	CAGNNNCTG	5 cut(s)	43, 1087, 2396, 2936, 3653
CciI	TCATGA	2 cut(s)	1147, 2328
CfoI	GCGC	2 cut(s)	446, 555
Cfr13I	GGNCC	5 cut(s)	270, 1279, 2455, 2991, 3115
CseI	GACGC	1 cut(s)	705
Csp6I	GTAC	8 cut(s)	839, 861, 1119, 1244, 1554, 1939, 2725, 2899
CspCI	CAANNNNNGTGG	2 cut(s)	1503, 1538
CviQI	GTAC	8 cut(s)	839, 861, 1119, 1244, 1554, 1939, 2725, 2899
DriI	GACNNNNNGTC	1 cut(s)	3430
EaeI	YGGCCR	2 cut(s)	103, 2577
Eam1104I	CTCTTC	3 cut(s)	562, 1620, 2439
Eam1105I	GACNNNNNGTC	1 cut(s)	3430
EarI	CTCTTC	3 cut(s)	562, 1620, 2439
Eco130I	CCWWGG	3 cut(s)	1239, 1747, 2245
Eco147I	AGGCCT	1 cut(s)	2221
Eco24I	GRGCYC	2 cut(s)	569, 2328
Eco47I	GGWCC	3 cut(s)	270, 1279, 3115
Eco57I	CTGAAG	6 cut(s)	65, 1644, 1973, 2427, 3299, 3412
Eco91I	GGTNACC	1 cut(s)	779
EcoNI	CCTNNNNNAGG	1 cut(s)	2624
EcoO109I	RGGNCCY	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	779
EcoRII	CCWGG	3 cut(s)	2216, 2221, 3513
EcoT14I	CCWWGG	3 cut(s)	1239, 1747, 2245
EcoT22I	ATGCAT	3 cut(s)	535, 1204, 1588
EcoT38I	GRGCYC	2 cut(s)	569, 2328
ErhI	CCWWGG	3 cut(s)	1239, 1747, 2245
Esp3I	CGTCTC	1 cut(s)	163
FalI	AAGNNNNNCTT	6 cut(s)	1040, 1072, 1821, 1853, 3051, 3083
FaqI	GGGAC	2 cut(s)	1448, 2755
FauNDI	CATATG	2 cut(s)	680, 3356
FbaI	TGATCA	2 cut(s)	2365, 2872
FblI	GTMKAC	1 cut(s)	800
FokI	GGATG	9 cut(s)	10, 74, 425, 597, 1285, 1436, 1484, 1868, 2200
FriOI	GRGCYC	2 cut(s)	569, 2328
FspBI	CTAG	2 cut(s)	1097, 2966
GlaI	GCGC	2 cut(s)	445, 554
GsuI	CTGGAG	4 cut(s)	20, 1189, 1271, 2244
HaeII	RGCGCY	1 cut(s)	556
HaeIII	GGCC	6 cut(s)	105, 1238, 2221, 2457, 2579, 2992
HapII	CCGG	2 cut(s)	260, 2306
HgaI	GACGC	1 cut(s)	705
HhaI	GCGC	2 cut(s)	446, 555
Hin1I	GRCGYC	1 cut(s)	716
Hin6I	GCGC	2 cut(s)	444, 553
HinP1I	GCGC	2 cut(s)	444, 553
HincII	GTYRAC	2 cut(s)	2187, 2664
HindII	GTYRAC	2 cut(s)	2187, 2664
HindIII	AAGCTT	3 cut(s)	233, 1705, 2569
HpaI	GTTAAC	1 cut(s)	2664
HpaII	CCGG	2 cut(s)	260, 2306
HphI	GGTGA	6 cut(s)	791, 1996, 2198, 2360, 3196, 3573
Hpy188III	TCNNGA	9 cut(s)	37, 1057, 1148, 1288, 2329, 2837, 3052, 3422, 3498
Hpy99I	CGWCG	2 cut(s)	389, 2724
HpyCH4III	ACNGT	8 cut(s)	157, 441, 596, 1478, 2139, 2356, 2539, 2724
HpyCH4IV	ACGT	7 cut(s)	617, 791, 1214, 1960, 2869, 3090, 3536
HpyF10VI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2716, 2750, 3662
HpySE526I	ACGT	7 cut(s)	617, 791, 1214, 1960, 2869, 3090, 3536
Hsp92I	GRCGYC	1 cut(s)	716
HspAI	GCGC	2 cut(s)	444, 553
KpnI	GGTACC	1 cut(s)	2728
Ksp22I	TGATCA	2 cut(s)	2365, 2872
KspAI	GTTAAC	1 cut(s)	2664
LguI	GCTCTTC	2 cut(s)	562, 1620
LmnI	GCTCC	9 cut(s)	39, 257, 433, 451, 610, 625, 1492, 1616, 2643
Lsp1109I	GCAGC	6 cut(s)	229, 335, 1074, 1096, 3004, 3640
MaeI	CTAG	2 cut(s)	1097, 2966
MaeII	ACGT	7 cut(s)	617, 791, 1214, 1960, 2869, 3090, 3536
MaeIII	GTNAC	9 cut(s)	503, 732, 779, 807, 1571, 1956, 2531, 3240, 3569
MfeI	CAATTG	2 cut(s)	1186, 3101
MflI	RGATCY	5 cut(s)	55, 1751, 2287, 3109, 3310
MhlI	GDGCHC	4 cut(s)	569, 2328, 3327, 3421
MmeI	TCCRAC	5 cut(s)	95, 143, 603, 1988, 3110
Mph1103I	ATGCAT	3 cut(s)	535, 1204, 1588
MroXI	GAANNNNTTC	3 cut(s)	948, 1052, 1441
MslI	CAYNNNNRTG	3 cut(s)	1146, 1600, 3174
MspA1I	CMGCKG	1 cut(s)	1087
MspCI	CTTAAG	1 cut(s)	3284
MspI	CCGG	2 cut(s)	260, 2306
MspR9I	CCNGG	3 cut(s)	2218, 2223, 3515
MunI	CAATTG	2 cut(s)	1186, 3101
Mva1269I	GAATGC	4 cut(s)	196, 1816, 3405, 3463
MvaI	CCWGG	3 cut(s)	2218, 2223, 3515
MwoI	GCNNNNNNNGC	6 cut(s)	191, 634, 824, 2716, 2750, 3662
NcoI	CCATGG	2 cut(s)	1239, 1747
NdeI	CATATG	2 cut(s)	680, 3356
NlaIV	GGNNCC	5 cut(s)	285, 2316, 2341, 2726, 3098
NmeAIII	GCCGAG	2 cut(s)	692, 3061
NmuCI	GTSAC	4 cut(s)	779, 1956, 2531, 3240
NsiI	ATGCAT	3 cut(s)	535, 1204, 1588
NspI	RCATGY	4 cut(s)	511, 867, 2619, 3257
NspV	TTCGAA	1 cut(s)	2450
PagI	TCATGA	2 cut(s)	1147, 2328
PceI	AGGCCT	1 cut(s)	2221
PciI	ACATGT	3 cut(s)	507, 863, 3253
PciSI	GCTCTTC	2 cut(s)	562, 1620
PcsI	WCGNNNNNNNCGW	3 cut(s)	153, 381, 614
PctI	GAATGC	4 cut(s)	196, 1816, 3405, 3463
PdmI	GAANNNNTTC	3 cut(s)	948, 1052, 1441
PflFI	GACNNNGTC	1 cut(s)	2537
PflMI	CCANNNNNTGG	2 cut(s)	294, 2734
Ppu21I	YACGTR	1 cut(s)	792
PpuMI	RGGWCCY	1 cut(s)	270
PscI	ACATGT	3 cut(s)	507, 863, 3253
PshBI	ATTAAT	1 cut(s)	2544
PsiI	TTATAA	2 cut(s)	887, 1827
Psp1406I	AACGTT	1 cut(s)	3536
Psp5II	RGGWCCY	1 cut(s)	270
Psp6I	CCWGG	3 cut(s)	2216, 2221, 3513
PspEI	GGTNACC	1 cut(s)	779
PspGI	CCWGG	3 cut(s)	2216, 2221, 3513
PspN4I	GGNNCC	5 cut(s)	285, 2316, 2341, 2726, 3098
PspPI	GGNCC	5 cut(s)	270, 1279, 2455, 2991, 3115
PspPPI	RGGWCCY	1 cut(s)	270
PstI	CTGCAG	5 cut(s)	1582, 1759, 2392, 2628, 3414
PstNI	CAGNNNCTG	5 cut(s)	43, 1087, 2396, 2936, 3653
PsuI	RGATCY	5 cut(s)	55, 1751, 2287, 3109, 3310
PsyI	GACNNNGTC	1 cut(s)	2537
PvuII	CAGCTG	1 cut(s)	1087
RsaI	GTAC	8 cut(s)	840, 862, 1120, 1245, 1555, 1940, 2726, 2900
RsaNI	GTAC	8 cut(s)	839, 861, 1119, 1244, 1554, 1939, 2725, 2899
RseI	CAYNNNNRTG	3 cut(s)	1146, 1600, 3174
SapI	GCTCTTC	2 cut(s)	562, 1620
Sau96I	GGNCC	5 cut(s)	270, 1279, 2455, 2991, 3115
ScrFI	CCNGG	3 cut(s)	2218, 2223, 3515
SduI	GDGCHC	4 cut(s)	569, 2328, 3327, 3421
SfcI	CTRYAG	8 cut(s)	769, 1578, 1755, 2319, 2388, 2624, 3384, 3410
SfuI	TTCGAA	1 cut(s)	2450
SinI	GGWCC	3 cut(s)	270, 1279, 3115
SmiMI	CAYNNNNRTG	3 cut(s)	1146, 1600, 3174
SmlI	CTYRAG	2 cut(s)	2837, 3284
SmoI	CTYRAG	2 cut(s)	2837, 3284
SseBI	AGGCCT	1 cut(s)	2221
SsiI	CCGC	5 cut(s)	102, 178, 482, 550, 2576
SspMI	CTAG	2 cut(s)	1097, 2966
StuI	AGGCCT	1 cut(s)	2221
StyD4I	CCNGG	3 cut(s)	2216, 2221, 3513
StyI	CCWWGG	3 cut(s)	1239, 1747, 2245
TaaI	ACNGT	8 cut(s)	157, 441, 596, 1478, 2139, 2356, 2539, 2724
TaiI	ACGT	7 cut(s)	620, 794, 1217, 1963, 2872, 3093, 3539
TaqI	TCGA	6 cut(s)	51, 387, 1641, 2450, 2610, 2980
TatI	WGTACW	4 cut(s)	838, 1118, 1553, 1938
TauI	GCSGC	4 cut(s)	105, 181, 553, 2579
TseFI	GTSAC	4 cut(s)	779, 1956, 2531, 3240
TseI	GCWGC	6 cut(s)	242, 348, 1084, 1087, 3017, 3653
Tsp45I	GTSAC	4 cut(s)	779, 1956, 2531, 3240
TspGWI	ACGGA	3 cut(s)	438, 1316, 1982
Tth111I	GACNNNGTC	1 cut(s)	2537
Van91I	CCANNNNNTGG	2 cut(s)	294, 2734
Vha464I	CTTAAG	1 cut(s)	3284
VneI	GTGCAC	1 cut(s)	3323
VpaK11BI	GGWCC	3 cut(s)	270, 1279, 3115
VspI	ATTAAT	1 cut(s)	2544
XagI	CCTNNNNNAGG	1 cut(s)	2624
XapI	RAATTY	5 cut(s)	380, 764, 845, 2823, 3478
XceI	RCATGY	4 cut(s)	511, 867, 2619, 3257
XmiI	GTMKAC	1 cut(s)	800
XmnI	GAANNNNTTC	3 cut(s)	948, 1052, 1441
XspI	CTAG	2 cut(s)	1097, 2966
Zsp2I	ATGCAT	3 cut(s)	535, 1204, 1588

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.