Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013032.1

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

25674 .. 31650

Gene Structure 5977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013032.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atggaattagcagactgggcagatttgtttattatgtccctttggcatcataaatggagtattacgcaggcagatcatagactttccgaaattcaaagttttcttgagtcatcagttcagaggtcatcatgtgaacgtgatcataataaggacaggttatttgtgtacctgaaaggacatgatgcagtgcctctttcagcatctgctattggagtccattccttcaactttctaggtttgggatatcgagtggactggcccatcagcattgttttgactcctgctgcattgaaaatatatgccgagatattcagtttcttgatacaagtgaaacttgctctgttttcattgactgacgtgtggtgccaattgaaggatctggtccagttgattagtcggaataaccactctgagcaacatgaaaaggaagtgagtcatttcaatgcaatggtgaaaatgaggcatcaggtcaatcactttgtatctacattacagcaatatgtggagtcacagctatcacatgtatcatggtgcaggtttctatattcacttaagcataaggtcaaagatatgatggatcttcagtcagtgcacatggcatatctctcagattcacttcacatatgtttcctatctgatgaaacaagacctatagcttgcatcattgagagcattctgcagtgtgctctggacttcaggtcttgtctcactggggaagtatggaatgcaggaacaggtcaagggaatttaattgcaagacactctggaatcaatatatcccaggttctttccataaagcaaacgtttgacaaaaatatgaaagaattgcacttgtgttacctcagatcaccgaaacatggcgagtttggactctctcacttctgggaatacctgaactacaacaaatattactcagatgctgcttccaaagctctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

312

Amino Acids

36.04

Weight (kDa)

6.82

Isoelectric Point (pI)

42.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	525
AccB1I	GGYRCC	1 cut(s)	363
AclI	AACGTT	1 cut(s)	803
AclWI	GGATC	2 cut(s)	384, 585
AcsI	RAATTY	2 cut(s)	90, 745
AcuI	CTGAAG	2 cut(s)	566, 679
AfaI	GTAC	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	373, 857
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	2 cut(s)	357, 520
AgsI	TTSAA	5 cut(s)	95, 226, 292, 373, 442
AhdI	GACNNNNNGTC	1 cut(s)	697
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	3 cut(s)	514, 656, 932
AluI	AGCT	3 cut(s)	514, 656, 932
Alw21I	GWGCWC	2 cut(s)	594, 688
Alw26I	GTCTC	1 cut(s)	710
Alw44I	GTGCAC	1 cut(s)	590
AlwI	GGATC	2 cut(s)	384, 585
AlwNI	CAGNNNCTG	2 cut(s)	203, 920
AoxI	GGCC	1 cut(s)	257
ApaLI	GTGCAC	1 cut(s)	590
ApeKI	GCWGC	2 cut(s)	284, 920
ApoI	RAATTY	2 cut(s)	90, 745
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	2 cut(s)	258, 382
AsuHPI	GGTGA	2 cut(s)	463, 840
AvaII	GGWCC	1 cut(s)	382
BaeGI	GKGCMC	1 cut(s)	594
BanI	GGYRCC	1 cut(s)	363
Bbv12I	GWGCWC	2 cut(s)	594, 688
BbvI	GCAGC	2 cut(s)	271, 907
BccI	CCATC	2 cut(s)	269, 568
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	710
BfaI	CTAG	1 cut(s)	233
BfmI	CTRYAG	2 cut(s)	651, 677
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	525
BisI	GCNGC	2 cut(s)	285, 921
BlsI	GCNGC	2 cut(s)	286, 922
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	1 cut(s)	382
BmeRI	GACNNNNNGTC	1 cut(s)	697
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	258, 382
BmiI	GGNNCC	1 cut(s)	365
BmrFI	CCNGG	1 cut(s)	782
BmrI	ACTGGG	2 cut(s)	25, 720
BmsI	GCATC	6 cut(s)	55, 172, 209, 472, 669, 907
BmuI	ACTGGG	2 cut(s)	25, 720
BpuEI	CTTGAG	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	780
Bsc4I	CCNNNNNNNGG	2 cut(s)	373, 857
Bse1I	ACTGG	4 cut(s)	20, 260, 385, 715
Bse3DI	GCAATG	1 cut(s)	453
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	1 cut(s)	780
BseLI	CCNNNNNNNGG	2 cut(s)	373, 857
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	4 cut(s)	402, 621, 856, 927
BseNI	ACTGG	4 cut(s)	20, 260, 385, 715
BseSI	GKGCMC	1 cut(s)	594
BseXI	GCAGC	2 cut(s)	271, 907
BsgI	GTGCAG	1 cut(s)	553
BshFI	GGCC	1 cut(s)	259
BshNI	GGYRCC	1 cut(s)	363
BsiHKAI	GWGCWC	2 cut(s)	594, 688
BslFI	GGGAC	1 cut(s)	22
BslI	CCNNNNNNNGG	2 cut(s)	373, 857
BsmAI	GTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	22
BsmI	GAATGC	2 cut(s)	672, 730
BsnI	GGCC	1 cut(s)	259
Bsp1286I	GDGCHC	2 cut(s)	594, 688
Bsp143I	GATC	5 cut(s)	73, 139, 376, 577, 845
BspANI	GGCC	1 cut(s)	259
BspCNI	CTCAG	4 cut(s)	403, 620, 855, 926
BspLI	GGNNCC	1 cut(s)	365
BspMAI	CTGCAG	1 cut(s)	681
BspMI	ACCTGC	1 cut(s)	525
BspPI	GGATC	2 cut(s)	384, 585
BspT107I	GGYRCC	1 cut(s)	363
BspTI	CTTAAG	1 cut(s)	551
BsrDI	GCAATG	1 cut(s)	453
BsrI	ACTGG	4 cut(s)	20, 260, 385, 715
BssECI	CCNNGG	1 cut(s)	780
BssMI	GATC	5 cut(s)	73, 139, 376, 577, 845
Bst2UI	CCWGG	1 cut(s)	782
BstAFI	CTTAAG	1 cut(s)	551
BstC8I	GCNNGC	2 cut(s)	69, 658
BstDEI	CTNAG	4 cut(s)	411, 607, 842, 913
BstKTI	GATC	5 cut(s)	76, 142, 379, 580, 848
BstMAI	GTCTC	1 cut(s)	710
BstMBI	GATC	5 cut(s)	73, 139, 376, 577, 845
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 929
BstNI	CCWGG	1 cut(s)	782
BstNSI	RCATGY	1 cut(s)	524
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	2 cut(s)	651, 677
BstSLI	GKGCMC	1 cut(s)	594
BstV1I	GCAGC	2 cut(s)	271, 907
BstX2I	RGATCY	2 cut(s)	376, 577
BstYI	RGATCY	2 cut(s)	376, 577
BsuRI	GGCC	1 cut(s)	259
BtrI	CACGTC	1 cut(s)	358
BtsI	GCAGTG	2 cut(s)	192, 686
BtsIMutI	CAGTG	4 cut(s)	192, 594, 686, 708
BveI	ACCTGC	1 cut(s)	525
Cac8I	GCNNGC	2 cut(s)	69, 658
CaiI	CAGNNNCTG	2 cut(s)	203, 920
Cfr13I	GGNCC	2 cut(s)	258, 382
Csp6I	GTAC	1 cut(s)	166
CviAII	CATG	7 cut(s)	129, 179, 419, 521, 528, 595, 857
CviJI	RGCY	4 cut(s)	259, 514, 656, 932
CviKI_1	RGCY	4 cut(s)	259, 514, 656, 932
CviQI	GTAC	1 cut(s)	166
DdeI	CTNAG	4 cut(s)	411, 607, 842, 913
DpnI	GATC	5 cut(s)	75, 141, 378, 579, 847
DpnII	GATC	5 cut(s)	73, 139, 376, 577, 845
DriI	GACNNNNNGTC	1 cut(s)	697
Eam1105I	GACNNNNNGTC	1 cut(s)	697
Eco32I	GATATC	1 cut(s)	245
Eco47I	GGWCC	1 cut(s)	382
Eco57I	CTGAAG	2 cut(s)	566, 679
EcoRII	CCWGG	1 cut(s)	780
EcoRV	GATATC	1 cut(s)	245
FaeI	CATG	7 cut(s)	132, 182, 422, 524, 531, 598, 860
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	7 cut(s)	128, 178, 418, 520, 527, 594, 856
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	285, 921
Fsp4HI	GCNGC	2 cut(s)	285, 921
FspBI	CTAG	1 cut(s)	233
GluI	GCNGC	2 cut(s)	285, 921
HaeIII	GGCC	1 cut(s)	259
Hin1II	CATG	7 cut(s)	132, 182, 422, 524, 531, 598, 860
HinfI	GANTC	8 cut(s)	107, 213, 277, 433, 506, 611, 768, 870
HphI	GGTGA	2 cut(s)	463, 840
Hpy166II	GTNNAC	4 cut(s)	134, 166, 253, 592
Hpy188I	TCNGA	8 cut(s)	88, 120, 399, 412, 610, 637, 845, 916
Hpy188III	TCNNGA	4 cut(s)	104, 319, 689, 765
Hpy8I	GTNNAC	4 cut(s)	134, 166, 253, 592
HpyAV	CCTTC	2 cut(s)	232, 367
HpyCH4IV	ACGT	3 cut(s)	136, 357, 803
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 929
HpyF3I	CTNAG	4 cut(s)	411, 607, 842, 913
HpySE526I	ACGT	3 cut(s)	136, 357, 803
Hsp92II	CATG	7 cut(s)	132, 182, 422, 524, 531, 598, 860
Ksp22I	TGATCA	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	73, 139, 376, 577, 845
Lsp1109I	GCAGC	2 cut(s)	271, 907
LweI	GCATC	6 cut(s)	55, 172, 209, 472, 669, 907
MaeI	CTAG	1 cut(s)	233
MaeII	ACGT	3 cut(s)	136, 357, 803
MaeIII	GTNAC	2 cut(s)	507, 836
MalI	GATC	5 cut(s)	75, 141, 378, 579, 847
MboI	GATC	5 cut(s)	73, 139, 376, 577, 845
MboII	GAAGA	1 cut(s)	572
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	2 cut(s)	376, 577
MhlI	GDGCHC	2 cut(s)	594, 688
MluCI	AATT	6 cut(s)	5, 90, 368, 745, 750, 824
MlyI	GAGTC	6 cut(s)	116, 222, 271, 442, 515, 864
MmeI	TCCRAC	1 cut(s)	377
MnlI	CCTC	4 cut(s)	114, 201, 453, 851
MseI	TTAA	2 cut(s)	552, 749
MslI	CAYNNNNRTG	1 cut(s)	441
MspCI	CTTAAG	1 cut(s)	551
MspR9I	CCNGG	1 cut(s)	782
MunI	CAATTG	1 cut(s)	368
Mva1269I	GAATGC	2 cut(s)	672, 730
MvaI	CCWGG	1 cut(s)	782
MwoI	GCNNNNNNNGC	2 cut(s)	17, 929
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	5 cut(s)	73, 139, 376, 577, 845
NlaIII	CATG	7 cut(s)	132, 182, 422, 524, 531, 598, 860
NlaIV	GGNNCC	1 cut(s)	365
NmeAIII	GCCGAG	1 cut(s)	328
NmuCI	GTSAC	1 cut(s)	507
NspI	RCATGY	1 cut(s)	524
PciI	ACATGT	1 cut(s)	520
PctI	GAATGC	2 cut(s)	672, 730
PfeI	GAWTC	2 cut(s)	611, 768
PkrI	GCNGC	2 cut(s)	286, 922
PleI	GAGTC	6 cut(s)	115, 221, 271, 441, 514, 864
PpsI	GAGTC	6 cut(s)	115, 221, 271, 441, 514, 864
PscI	ACATGT	1 cut(s)	520
Psp1406I	AACGTT	1 cut(s)	803
Psp6I	CCWGG	1 cut(s)	780
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	1 cut(s)	365
PspPI	GGNCC	2 cut(s)	258, 382
PstI	CTGCAG	1 cut(s)	681
PstNI	CAGNNNCTG	2 cut(s)	203, 920
PsuI	RGATCY	2 cut(s)	376, 577
RsaI	GTAC	1 cut(s)	167
RsaNI	GTAC	1 cut(s)	166
RseI	CAYNNNNRTG	1 cut(s)	441
SaqAI	TTAA	2 cut(s)	552, 749
SatI	GCNGC	2 cut(s)	285, 921
Sau3AI	GATC	5 cut(s)	73, 139, 376, 577, 845
Sau96I	GGNCC	2 cut(s)	258, 382
SchI	GAGTC	6 cut(s)	116, 222, 271, 442, 515, 864
ScrFI	CCNGG	1 cut(s)	782
SduI	GDGCHC	2 cut(s)	594, 688
SfaNI	GCATC	6 cut(s)	55, 172, 209, 472, 669, 907
SfcI	CTRYAG	2 cut(s)	651, 677
SinI	GGWCC	1 cut(s)	382
SmiMI	CAYNNNNRTG	1 cut(s)	441
SmlI	CTYRAG	2 cut(s)	104, 551
SmoI	CTYRAG	2 cut(s)	104, 551
Sse9I	AATT	6 cut(s)	5, 90, 368, 745, 750, 824
SspI	AATATT	1 cut(s)	908
SspMI	CTAG	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	780
TaiI	ACGT	3 cut(s)	139, 360, 806
TaqI	TCGA	1 cut(s)	247
TasI	AATT	6 cut(s)	5, 90, 368, 745, 750, 824
TfiI	GAWTC	2 cut(s)	611, 768
Tru1I	TTAA	2 cut(s)	552, 749
Tru9I	TTAA	2 cut(s)	552, 749
TscAI	CASTG	4 cut(s)	192, 594, 686, 715
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	2 cut(s)	284, 920
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	4 cut(s)	336, 435, 654, 833
TspRI	CASTG	4 cut(s)	192, 594, 686, 715
Vha464I	CTTAAG	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	590
VpaK11BI	GGWCC	1 cut(s)	382
XapI	RAATTY	2 cut(s)	90, 745
XceI	RCATGY	1 cut(s)	524
XspI	CTAG	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.