FvH4_3g27031

microtubule nucleation by microtubule organizing center

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
20134103 .. 20138472
4370 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27031.t1

Sequence Viewer

Length: 1299 bp
ATGTCTCATTGCTATCTACGTGATATTAGGATGAACGACGAATCCTCTGATGATGAGTATGAAGAAATTGTGCTTGCTCTTGTTGAAGAATCCATCAAGGAAGACACACCTCGTCGACGTGGTTCTGTTAAAGAACCCAAAAATATGGCCGTGGACACCGATTTCGCATTCCACGATTTGAAGCTCGAAGATCCTTTGCTTCCATCTTCCAACGTCAAAGCCTCTCTCCGTCTCCGACTTGACTCATGCTCTGGGGAATATTCTCCACTCCATCTAGTCTTTCTTCTCCTAAAATTTGTGAATTTCTTTACCAATTTGAGTCTCCAAGCAACCGCCATACAGTCTGCTTCGTATAGTCTTGTGGAGGGTTACATGTGTGCTCTGGATACCTTGTATGCTTCTGCGGGTTGTCTTAACAGTGTGGTCCATTCTGAACTTACTTTGTTGGAGGTTGCTGTTCCTGCTCATAGTCCTGTACTAAAATTTCTTTTTCTTCGTACATGTGAACCATACTTCGGATTTATAAGATCATGGATATTCAAAGCTGAGATTAGCGATCCTTATGAGGAGTTTTTGGTTGAGTATGTTCACTCTCATGATCCATATGTTGAATCCGGTATCTCTGACTTCCCATTGGCAACTATTAGGGAACAAGATGGAGTTCCTGTTCCTTGTTTTTTGAAGGACTTCTTGACTCCACTTTTCAGAGCAGGTCAGCAGCTGCAAGTTCTAGCGAAATTGCTTCGATTGTGTACTTTTGTTCCCCCTGAGAACCATACTTATGAGAGTTTTCTTCCTTGCTGGAGTGGGTTTTCAAGCAATAGTCCATCGTATGCATCTCCATTGACATTCAGCACAGGAAATATAGAGGCCATGGTACTTTCATGGGAATGTTATTACAAAAGGATGCAAGACAGACTCCAGATTCTTTTGACGGAATTAGAGTTCAAATTTCAACAGGTAGTTCCACAAGACGCGCTTGTTCTCTTGGATTATAGTGGAAGGAGTTCAACCATCCCAGTATTAGTCGCATTGGATGAAAGTTTTATTGAAAGGGGGTCAAATGTGGTGTCTGATGATTTGGATTTGGACGAGTTAAGTACAAGAGACAAATTATGTTACACTGCAGATGAGTACGAGTCATCTGAATGTTCAAGCTCAACTATATCTGAAGAGCAAAACGTGCTCAAGCAGACAACTGAGTTTCCTAGTCACATTGTAGGAGAAGAACAAAAGTATTTCTCTGCTTTAAGCTTCTCAACAGGTATTCCGGTTGATACTTTGCAAAAGTCCCATTGA

Protein Analysis

433

Amino Acids

48.88

Weight (kDa)

4.6

Isoelectric Point (pI)

55.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GCP_N_terminal PF17681 134 - 251 1.2e-10 Gamma tubulin complex component N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 524
Acc36I ACCTGC 1 cut(s) 701
AccI GTMKAC 1 cut(s) 115
AccII CGCG 1 cut(s) 977
AciI CCGC 2 cut(s) 333, 404
AclWI GGATC 3 cut(s) 185, 551, 593
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 4 cut(s) 293, 301, 482, 950
AcuI CTGAAG 1 cut(s) 1191
AfaI GTAC 6 cut(s) 477, 499, 754, 879, 1102, 1136
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 2 cut(s) 372, 500
AjiI CACGTC 1 cut(s) 119
AloI GAACNNNNNNTCC 6 cut(s) 26, 58, 651, 683, 929, 961
AluBI AGCT 5 cut(s) 184, 545, 721, 1158, 1254
AluI AGCT 5 cut(s) 184, 545, 721, 1158, 1254
Alw21I GWGCWC 2 cut(s) 382, 1188
Alw26I GTCTC 4 cut(s) 9, 236, 326, 1101
AlwI GGATC 3 cut(s) 185, 551, 593
AlwNI CAGNNNCTG 1 cut(s) 721
AoxI GGCC 2 cut(s) 147, 870
ApeKI GCWGC 2 cut(s) 718, 721
ApoI RAATTY 4 cut(s) 293, 301, 482, 950
ArsI GACNNNNNNTTYG 4 cut(s) 146, 178, 1055, 1087
Asp700I GAANNNNTTC 2 cut(s) 686, 1006
AspLEI GCGC 1 cut(s) 979
AspS9I GGNCC 1 cut(s) 424
AvaII GGWCC 1 cut(s) 424
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 382, 1188
BbvI GCAGC 2 cut(s) 708, 730
BccI CCATC 6 cut(s) 101, 211, 279, 650, 835, 1022
BceAI ACGGC 1 cut(s) 134
BciVI GTATCC 1 cut(s) 379
BcoDI GTCTC 4 cut(s) 9, 236, 326, 1101
BfaI CTAG 3 cut(s) 275, 731, 1209
BfmI CTRYAG 1 cut(s) 1125
BfuAI ACCTGC 1 cut(s) 701
BfuI GTATCC 1 cut(s) 379
BisI GCNGC 2 cut(s) 719, 722
BlsI GCNGC 2 cut(s) 720, 723
Bme18I GGWCC 1 cut(s) 424
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 424
BmrI ACTGGG 1 cut(s) 1013
BmsI GCATC 2 cut(s) 845, 897
BmuI ACTGGG 1 cut(s) 1013
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 2 cut(s) 823, 905
BpuEI CTTGAG 1 cut(s) 1172
BsaAI YACGTR 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 150, 873
BsaWI WCCGGW 2 cut(s) 614, 1270
BsaXI ACNNNNNCTCC 2 cut(s) 651, 681
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 1019
Bse3DI GCAATG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 150, 873
BseGI GGATG 4 cut(s) 36, 912, 1014, 1042
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 7
BseMII CTCAG 3 cut(s) 537, 759, 1191
BseNI ACTGG 1 cut(s) 1019
BseRI GAGGAG 1 cut(s) 581
BseXI GCAGC 2 cut(s) 708, 730
Bsh1236I CGCG 1 cut(s) 977
BshFI GGCC 2 cut(s) 149, 872
BsiHKAI GWGCWC 2 cut(s) 382, 1188
BsiSI CCGG 2 cut(s) 615, 1271
BslFI GGGAC 1 cut(s) 1276
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 4 cut(s) 9, 236, 326, 1101
BsmBI CGTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 1276
BsmI GAATGC 1 cut(s) 167
BsnI GGCC 2 cut(s) 149, 872
Bsp1286I GDGCHC 2 cut(s) 382, 1188
Bsp143I GATC 4 cut(s) 190, 527, 556, 598
Bsp19I CCATGG 1 cut(s) 873
BspACI CCGC 2 cut(s) 333, 404
BspANI GGCC 2 cut(s) 149, 872
BspCNI CTCAG 3 cut(s) 538, 760, 1192
BspFNI CGCG 1 cut(s) 977
BspHI TCATGA 1 cut(s) 595
BspMAI CTGCAG 1 cut(s) 1129
BspMI ACCTGC 1 cut(s) 701
BspPI GGATC 3 cut(s) 185, 551, 593
BspQI GCTCTTC 1 cut(s) 1167
BsrDI GCAATG 1 cut(s) 7
BsrI ACTGG 1 cut(s) 1019
BssECI CCNNGG 2 cut(s) 150, 873
BssMI GATC 4 cut(s) 190, 527, 556, 598
BssT1I CCWWGG 1 cut(s) 873
Bst4CI ACNGT 2 cut(s) 342, 419
Bst6I CTCTTC 1 cut(s) 1167
BstAPI GCANNNNNTGC 1 cut(s) 1183
BstBAI YACGTR 1 cut(s) 20
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 546, 768, 1200
BstDSI CCRYGG 2 cut(s) 150, 873
BstF5I GGATG 4 cut(s) 36, 912, 1014, 1042
BstFNI CGCG 1 cut(s) 977
BstHHI GCGC 1 cut(s) 979
BstKTI GATC 4 cut(s) 193, 530, 559, 601
BstMAI GTCTC 4 cut(s) 9, 236, 326, 1101
BstMBI GATC 4 cut(s) 190, 527, 556, 598
BstMWI GCNNNNNNNGC 2 cut(s) 461, 1183
BstNSI RCATGY 2 cut(s) 376, 504
BstSFI CTRYAG 1 cut(s) 1125
BstUI CGCG 1 cut(s) 977
BstV1I GCAGC 2 cut(s) 708, 730
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 145
BstYI RGATCY 1 cut(s) 190
BsuI GTATCC 1 cut(s) 379
BsuRI GGCC 2 cut(s) 149, 872
BtgI CCRYGG 2 cut(s) 150, 873
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 4 cut(s) 36, 912, 1014, 1042
BtsI GCAGTG 1 cut(s) 1122
BtsIMutI CAGTG 2 cut(s) 424, 1122
BveI ACCTGC 1 cut(s) 701
Cac8I GCNNGC 1 cut(s) 75
CaiI CAGNNNCTG 1 cut(s) 721
CciI TCATGA 1 cut(s) 595
CfoI GCGC 1 cut(s) 979
Cfr13I GGNCC 1 cut(s) 424
CseI GACGC 1 cut(s) 983
Csp6I GTAC 6 cut(s) 476, 498, 753, 878, 1101, 1135
CviAII CATG 7 cut(s) 246, 373, 501, 531, 596, 874, 885
CviJI RGCY 8 cut(s) 149, 184, 221, 545, 721, 872, 1158, 1254
CviKI_1 RGCY 8 cut(s) 149, 184, 221, 545, 721, 872, 1158, 1254
CviQI GTAC 6 cut(s) 476, 498, 753, 878, 1101, 1135
DdeI CTNAG 3 cut(s) 546, 768, 1200
DpnI GATC 4 cut(s) 192, 529, 558, 600
DpnII GATC 4 cut(s) 190, 527, 556, 598
EaeI YGGCCR 1 cut(s) 147
Eam1104I CTCTTC 1 cut(s) 1167
EarI CTCTTC 1 cut(s) 1167
Eco130I CCWWGG 1 cut(s) 873
Eco47I GGWCC 1 cut(s) 424
Eco57I CTGAAG 1 cut(s) 1191
EcoT14I CCWWGG 1 cut(s) 873
EcoT22I ATGCAT 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 873
Esp3I CGTCTC 1 cut(s) 236
FaeI CATG 7 cut(s) 249, 376, 504, 534, 599, 877, 888
FalI AAGNNNNNCTT 4 cut(s) 674, 706, 963, 995
FaqI GGGAC 1 cut(s) 1276
FatI CATG 7 cut(s) 245, 372, 500, 530, 595, 873, 884
FauI CCCGC 1 cut(s) 397
FauNDI CATATG 1 cut(s) 604
FblI GTMKAC 1 cut(s) 115
Fnu4HI GCNGC 2 cut(s) 719, 722
FokI GGATG 4 cut(s) 43, 919, 1001, 1049
Fsp4HI GCNGC 2 cut(s) 719, 722
FspBI CTAG 3 cut(s) 275, 731, 1209
GlaI GCGC 1 cut(s) 978
GluI GCNGC 2 cut(s) 719, 722
GsuI CTGGAG 2 cut(s) 823, 905
HaeIII GGCC 2 cut(s) 149, 872
HapII CCGG 2 cut(s) 615, 1271
HgaI GACGC 1 cut(s) 983
HhaI GCGC 1 cut(s) 979
Hin1II CATG 7 cut(s) 249, 376, 504, 534, 599, 877, 888
Hin6I GCGC 1 cut(s) 977
HinP1I GCGC 1 cut(s) 977
HincII GTYRAC 1 cut(s) 116
HindII GTYRAC 1 cut(s) 116
HindIII AAGCTT 1 cut(s) 1252
HinfI GANTC 9 cut(s) 41, 89, 242, 319, 611, 694, 918, 925, 1139
HpaII CCGG 2 cut(s) 615, 1271
Hpy166II GTNNAC 5 cut(s) 116, 154, 506, 589, 753
Hpy188I TCNGA 9 cut(s) 49, 236, 433, 518, 625, 707, 1075, 1147, 1171
Hpy188III TCNNGA 4 cut(s) 383, 596, 691, 922
Hpy8I GTNNAC 5 cut(s) 116, 154, 506, 589, 753
Hpy99I CGWCG 3 cut(s) 41, 117, 120
HpyAV CCTTC 2 cut(s) 676, 996
HpyCH4III ACNGT 2 cut(s) 342, 419
HpyCH4IV ACGT 4 cut(s) 19, 118, 213, 1182
HpyCH4V TGCA 5 cut(s) 724, 836, 910, 1127, 1285
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 1183
HpyF3I CTNAG 3 cut(s) 546, 768, 1200
HpySE526I ACGT 4 cut(s) 19, 118, 213, 1182
Hsp92II CATG 7 cut(s) 249, 376, 504, 534, 599, 877, 888
HspAI GCGC 1 cut(s) 977
Kzo9I GATC 4 cut(s) 190, 527, 556, 598
LguI GCTCTTC 1 cut(s) 1167
Lsp1109I GCAGC 2 cut(s) 708, 730
LweI GCATC 2 cut(s) 845, 897
MaeI CTAG 3 cut(s) 275, 731, 1209
MaeII ACGT 4 cut(s) 19, 118, 213, 1182
MaeIII GTNAC 3 cut(s) 368, 1118, 1211
MalI GATC 4 cut(s) 192, 529, 558, 600
MboI GATC 4 cut(s) 190, 527, 556, 598
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 382, 1188
MluCI AATT 9 cut(s) 66, 293, 301, 313, 482, 737, 938, 950, 1112
MlyI GAGTC 5 cut(s) 236, 328, 688, 912, 1148
MmeI TCCRAC 3 cut(s) 234, 259, 426
MnlI CCTC 7 cut(s) 55, 120, 232, 358, 442, 559, 862
Mph1103I ATGCAT 1 cut(s) 838
MroXI GAANNNNTTC 2 cut(s) 686, 1006
MseI TTAA 4 cut(s) 129, 414, 1097, 1250
MslI CAYNNNNRTG 4 cut(s) 594, 780, 889, 1147
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 2 cut(s) 615, 1271
Mva1269I GAATGC 1 cut(s) 167
MvnI CGCG 1 cut(s) 977
MwoI GCNNNNNNNGC 2 cut(s) 461, 1183
NcoI CCATGG 1 cut(s) 873
NdeI CATATG 1 cut(s) 604
NdeII GATC 4 cut(s) 190, 527, 556, 598
NlaIII CATG 7 cut(s) 249, 376, 504, 534, 599, 877, 888
NmuCI GTSAC 1 cut(s) 1211
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 2 cut(s) 376, 504
PagI TCATGA 1 cut(s) 595
PciI ACATGT 2 cut(s) 372, 500
PciSI GCTCTTC 1 cut(s) 1167
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PctI GAATGC 1 cut(s) 167
PdmI GAANNNNTTC 2 cut(s) 686, 1006
PfeI GAWTC 4 cut(s) 41, 89, 611, 925
PkrI GCNGC 2 cut(s) 720, 723
PleI GAGTC 5 cut(s) 236, 327, 688, 912, 1147
PpsI GAGTC 5 cut(s) 236, 327, 688, 912, 1147
Ppu21I YACGTR 1 cut(s) 20
PscI ACATGT 2 cut(s) 372, 500
PsiI TTATAA 1 cut(s) 524
PspPI GGNCC 1 cut(s) 424
PstI CTGCAG 1 cut(s) 1129
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 6 cut(s) 477, 499, 754, 879, 1102, 1136
RsaNI GTAC 6 cut(s) 476, 498, 753, 878, 1101, 1135
RseI CAYNNNNRTG 4 cut(s) 594, 780, 889, 1147
SalI GTCGAC 1 cut(s) 114
SapI GCTCTTC 1 cut(s) 1167
SaqAI TTAA 4 cut(s) 129, 414, 1097, 1250
SatI GCNGC 2 cut(s) 719, 722
Sau3AI GATC 4 cut(s) 190, 527, 556, 598
Sau96I GGNCC 1 cut(s) 424
SchI GAGTC 5 cut(s) 236, 328, 688, 912, 1148
SduI GDGCHC 2 cut(s) 382, 1188
SfaNI GCATC 2 cut(s) 845, 897
SfcI CTRYAG 1 cut(s) 1125
SgrDI CGTCGACG 1 cut(s) 114
SinI GGWCC 1 cut(s) 424
SmiMI CAYNNNNRTG 4 cut(s) 594, 780, 889, 1147
SmlI CTYRAG 1 cut(s) 1187
SmoI CTYRAG 1 cut(s) 1187
Sse9I AATT 9 cut(s) 66, 293, 301, 313, 482, 737, 938, 950, 1112
SsiI CCGC 2 cut(s) 333, 404
SspI AATATT 1 cut(s) 260
SspMI CTAG 3 cut(s) 275, 731, 1209
StyI CCWWGG 1 cut(s) 873
TaaI ACNGT 2 cut(s) 342, 419
TaiI ACGT 4 cut(s) 22, 121, 216, 1185
TaqI TCGA 3 cut(s) 115, 186, 745
TasI AATT 9 cut(s) 66, 293, 301, 313, 482, 737, 938, 950, 1112
TatI WGTACW 3 cut(s) 475, 752, 1100
TfiI GAWTC 4 cut(s) 41, 89, 611, 925
Tru1I TTAA 4 cut(s) 129, 414, 1097, 1250
Tru9I TTAA 4 cut(s) 129, 414, 1097, 1250
TscAI CASTG 2 cut(s) 424, 1129
TseFI GTSAC 1 cut(s) 1211
TseI GCWGC 2 cut(s) 718, 721
Tsp45I GTSAC 1 cut(s) 1211
TspDTI ATGAA 4 cut(s) 47, 75, 873, 1053
TspGWI ACGGA 2 cut(s) 218, 950
TspRI CASTG 2 cut(s) 424, 1129
VpaK11BI GGWCC 1 cut(s) 424
XapI RAATTY 4 cut(s) 293, 301, 482, 950
XceI RCATGY 2 cut(s) 376, 504
XmiI GTMKAC 1 cut(s) 115
XmnI GAANNNNTTC 2 cut(s) 686, 1006
XspI CTAG 3 cut(s) 275, 731, 1209
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.