Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8383485.1

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1086

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8383485.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgtgtgctctggataccttgtatgcatctgtgggtgtgaggcggcgctcttcttcaggctcgccttctgccgtgggatgtctcaacagtgtagtccattctgagcttactttgttggagctgtatctgcacacaaaggaattgaggactcagattgaatcccttacaaacatatgcaacttatatcagttctctgattgcttctcggcgtcttcttttgatgagttacttacgaaagccaaggctgagttttgtaaattctacagagggggtgatttactcacgtatctgtatactcagttacaggttgctgatcctgctcatcgtcctgtactaaaatttctttttcttcgtacatgtgaaccgtacttcggattcataagatcatggatattcaaagctgagattagcgatccttatgaggagtttttggttgaatatgttcactctccaaatccatctgttgaagctggtatctctattgacttcccattggcaactattagggaacgagatggagttcctgttccttgttttttgaaggacttcttgattccacttttcagagctggtcagcagctgcaagttctagcgaaattgcttgaattgtgtacttttgttgcccctaagaaccatactcatgagagttttcttccctgctggagtgggttttcaagcaattgtccatcttatgcatctccattgacgttcagcaaaggaaatatagaggccatg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

245

Amino Acids

27.59

Weight (kDa)

5.87

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	293
AciI	CCGC	1 cut(s)	43
AclWI	GGATC	2 cut(s)	308, 407
AcsI	RAATTY	2 cut(s)	257, 338
AcuI	CTGAAG	1 cut(s)	39
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	4 cut(s)	333, 355, 368, 613
AfiI	CCNNNNNNNGG	1 cut(s)	371
AflIII	ACRYGT	1 cut(s)	356
AgsI	TTSAA	7 cut(s)	158, 397, 437, 467, 541, 605, 675
AloI	GAACNNNNNNTCC	2 cut(s)	510, 542
AluBI	AGCT	6 cut(s)	106, 121, 401, 470, 569, 580
AluI	AGCT	6 cut(s)	106, 121, 401, 470, 569, 580
Alw21I	GWGCWC	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	2 cut(s)	308, 407
AlwNI	CAGNNNCTG	1 cut(s)	580
AoxI	GGCC	1 cut(s)	729
ApeKI	GCWGC	2 cut(s)	577, 580
ApoI	RAATTY	2 cut(s)	257, 338
Asp700I	GAANNNNTTC	2 cut(s)	441, 545
AspLEI	GCGC	1 cut(s)	48
AsuHPI	GGTGA	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	269, 302
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	10
BbvI	GCAGC	2 cut(s)	567, 589
BccI	CCATC	3 cut(s)	466, 509, 694
BceAI	ACGGC	1 cut(s)	56
BciVI	GTATCC	1 cut(s)	7
BcoDI	GTCTC	1 cut(s)	86
BfaI	CTAG	1 cut(s)	590
BfmI	CTRYAG	1 cut(s)	262
BfoI	RGCGCY	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	7
BisI	GCNGC	3 cut(s)	44, 578, 581
BlsI	GCNGC	3 cut(s)	45, 579, 582
BmsI	GCATC	2 cut(s)	35, 704
BpiI	GAAGAC	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	682
BsaAI	YACGTR	1 cut(s)	285
BsaHI	GRCGYC	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	72, 240
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	371
BseDI	CCNNGG	2 cut(s)	72, 240
BseGI	GGATG	1 cut(s)	83
BseLI	CCNNNNNNNGG	1 cut(s)	371
BseMII	CTCAG	5 cut(s)	93, 164, 237, 311, 393
BseRI	GAGGAG	1 cut(s)	437
BseXI	GCAGC	2 cut(s)	567, 589
BsgI	GTGCAG	1 cut(s)	113
BshFI	GGCC	1 cut(s)	731
BsiHKAI	GWGCWC	1 cut(s)	10
BslI	CCNNNNNNNGG	1 cut(s)	371
BsmAI	GTCTC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	731
Bsp1286I	GDGCHC	1 cut(s)	10
Bsp143I	GATC	3 cut(s)	313, 383, 412
BspACI	CCGC	1 cut(s)	43
BspANI	GGCC	1 cut(s)	731
BspCNI	CTCAG	5 cut(s)	94, 163, 238, 310, 394
BspHI	TCATGA	1 cut(s)	640
BspPI	GGATC	2 cut(s)	308, 407
BspQI	GCTCTTC	1 cut(s)	55
BssECI	CCNNGG	2 cut(s)	72, 240
BssMI	GATC	3 cut(s)	313, 383, 412
BssNAI	GTATAC	1 cut(s)	294
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	240
Bst1107I	GTATAC	1 cut(s)	294
Bst4CI	ACNGT	2 cut(s)	89, 366
Bst6I	CTCTTC	1 cut(s)	55
BstACI	GRCGYC	1 cut(s)	209
BstBAI	YACGTR	1 cut(s)	285
BstC8I	GCNNGC	1 cut(s)	62
BstDEI	CTNAG	6 cut(s)	102, 150, 246, 297, 402, 627
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	1 cut(s)	83
BstH2I	RGCGCY	1 cut(s)	49
BstHHI	GCGC	1 cut(s)	48
BstKTI	GATC	3 cut(s)	316, 386, 415
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	3 cut(s)	313, 383, 412
BstMWI	GCNNNNNNNGC	2 cut(s)	127, 317
BstNSI	RCATGY	1 cut(s)	360
BstSFI	CTRYAG	1 cut(s)	262
BstV1I	GCAGC	2 cut(s)	567, 589
BstV2I	GAAGAC	1 cut(s)	204
BstZ17I	GTATAC	1 cut(s)	294
BsuI	GTATCC	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	731
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	83
BtsIMutI	CAGTG	1 cut(s)	94
Cac8I	GCNNGC	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	580
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	1 cut(s)	48
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	4 cut(s)	332, 354, 367, 612
CviAII	CATG	4 cut(s)	357, 387, 641, 733
CviQI	GTAC	4 cut(s)	332, 354, 367, 612
DdeI	CTNAG	6 cut(s)	102, 150, 246, 297, 402, 627
DpnI	GATC	3 cut(s)	315, 385, 414
DpnII	GATC	3 cut(s)	313, 383, 412
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	240
Eco57I	CTGAAG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	240
EcoT22I	ATGCAT	2 cut(s)	28, 697
ErhI	CCWWGG	1 cut(s)	240
FaeI	CATG	3 cut(s)	360, 390, 644
FalI	AAGNNNNNCTT	2 cut(s)	533, 565
FatI	CATG	3 cut(s)	356, 386, 640
FauNDI	CATATG	1 cut(s)	173
FblI	GTMKAC	1 cut(s)	293
Fnu4HI	GCNGC	3 cut(s)	44, 578, 581
FokI	GGATG	1 cut(s)	90
Fsp4HI	GCNGC	3 cut(s)	44, 578, 581
FspBI	CTAG	1 cut(s)	590
GlaI	GCGC	1 cut(s)	47
GluI	GCNGC	3 cut(s)	44, 578, 581
GsuI	CTGGAG	1 cut(s)	682
HaeII	RGCGCY	1 cut(s)	49
HaeIII	GGCC	1 cut(s)	731
HgaI	GACGC	1 cut(s)	198
HhaI	GCGC	1 cut(s)	48
Hin1I	GRCGYC	1 cut(s)	209
Hin1II	CATG	3 cut(s)	360, 390, 644
Hin6I	GCGC	1 cut(s)	46
HinP1I	GCGC	1 cut(s)	46
HinfI	GANTC	4 cut(s)	148, 158, 375, 553
HphI	GGTGA	1 cut(s)	284
Hpy166II	GTNNAC	4 cut(s)	294, 362, 445, 612
Hpy188I	TCNGA	5 cut(s)	103, 153, 196, 374, 566
Hpy188III	TCNNGA	3 cut(s)	11, 550, 641
Hpy8I	GTNNAC	4 cut(s)	294, 362, 445, 612
HpyAV	CCTTC	2 cut(s)	75, 535
HpyCH4III	ACNGT	2 cut(s)	89, 366
HpyCH4IV	ACGT	2 cut(s)	284, 707
HpyCH4V	TGCA	5 cut(s)	26, 130, 177, 583, 695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	127, 317
HpyF3I	CTNAG	6 cut(s)	102, 150, 246, 297, 402, 627
HpySE526I	ACGT	2 cut(s)	284, 707
Hsp92I	GRCGYC	1 cut(s)	209
Hsp92II	CATG	3 cut(s)	360, 390, 644
HspAI	GCGC	1 cut(s)	46
Kzo9I	GATC	3 cut(s)	313, 383, 412
LguI	GCTCTTC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	118
LpnPI	CCDG	9 cut(s)	42, 290, 330, 342, 456, 537, 555, 646, 670
Lsp1109I	GCAGC	2 cut(s)	567, 589
LweI	GCATC	2 cut(s)	35, 704
MaeI	CTAG	1 cut(s)	590
MaeII	ACGT	2 cut(s)	284, 707
MaeIII	GTNAC	2 cut(s)	225, 300
MalI	GATC	3 cut(s)	315, 385, 414
MboI	GATC	3 cut(s)	313, 383, 412
MboII	GAAGA	5 cut(s)	42, 45, 204, 341, 644
MfeI	CAATTG	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	10
MluCI	AATT	6 cut(s)	140, 257, 338, 596, 605, 679
MlyI	GAGTC	1 cut(s)	142
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	5 cut(s)	33, 138, 260, 415, 721
Mph1103I	ATGCAT	2 cut(s)	28, 697
MroXI	GAANNNNTTC	2 cut(s)	441, 545
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	1 cut(s)	580
MunI	CAATTG	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	127, 317
NdeI	CATATG	1 cut(s)	173
NdeII	GATC	3 cut(s)	313, 383, 412
NlaIII	CATG	3 cut(s)	360, 390, 644
NmeAIII	GCCGAG	1 cut(s)	185
NsiI	ATGCAT	2 cut(s)	28, 697
NspI	RCATGY	1 cut(s)	360
PagI	TCATGA	1 cut(s)	640
PciI	ACATGT	1 cut(s)	356
PciSI	GCTCTTC	1 cut(s)	55
PdmI	GAANNNNTTC	2 cut(s)	441, 545
PfeI	GAWTC	3 cut(s)	158, 375, 553
PkrI	GCNGC	3 cut(s)	45, 579, 582
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	285
PscI	ACATGT	1 cut(s)	356
PstNI	CAGNNNCTG	1 cut(s)	580
PvuII	CAGCTG	1 cut(s)	580
RsaI	GTAC	4 cut(s)	333, 355, 368, 613
RsaNI	GTAC	4 cut(s)	332, 354, 367, 612
RseI	CAYNNNNRTG	1 cut(s)	639
SapI	GCTCTTC	1 cut(s)	55
SatI	GCNGC	3 cut(s)	44, 578, 581
Sau3AI	GATC	3 cut(s)	313, 383, 412
SchI	GAGTC	1 cut(s)	142
SduI	GDGCHC	1 cut(s)	10
SfaNI	GCATC	2 cut(s)	35, 704
SfcI	CTRYAG	1 cut(s)	262
SmiMI	CAYNNNNRTG	1 cut(s)	639
Sse9I	AATT	6 cut(s)	140, 257, 338, 596, 605, 679
SsiI	CCGC	1 cut(s)	43
SspMI	CTAG	1 cut(s)	590
StyI	CCWWGG	1 cut(s)	240
TaaI	ACNGT	2 cut(s)	89, 366
TaiI	ACGT	2 cut(s)	287, 710
TasI	AATT	6 cut(s)	140, 257, 338, 596, 605, 679
TatI	WGTACW	2 cut(s)	331, 611
TauI	GCSGC	1 cut(s)	46
TfiI	GAWTC	3 cut(s)	158, 375, 553
TscAI	CASTG	1 cut(s)	94
TseI	GCWGC	2 cut(s)	577, 580
TspDTI	ATGAA	1 cut(s)	367
TspRI	CASTG	1 cut(s)	94
XapI	RAATTY	2 cut(s)	257, 338
XceI	RCATGY	1 cut(s)	360
XmiI	GTMKAC	1 cut(s)	293
XmnI	GAANNNNTTC	2 cut(s)	441, 545
XspI	CTAG	1 cut(s)	590
Zsp2I	ATGCAT	2 cut(s)	28, 697

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.