Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003027

Physical Location & Seq

Genomic Coordinates Reverse (-)

21470359 .. 21480187

Gene Structure 9829 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1178600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3756 bp

ATGCGTCTCTCCTGCCTTCACTCACACTCAATTCAGGAAGAAGGCAAGTCGAGGACCTGTGCCCGCAGCGTTAGTATGACAGTGGACACCAATTTCGCATCCTCGTTGTTTGAGAATCTAAAGCTGGAACATCCATGGCTTCCTCCAACTAATTGGGAATCGATCCCTTCCGAAAGCGGCAATTCCCACCTTCTAAACCCCAACTCCTCTTCCTCTCAGTCCCTCGACCATGCCTCCGCCGTCTCCGAGGCAAGTTTGGTGAGGTTGGCGATGAATGCACTTGGAGGAGTCGAATCAGCCCTTGTTAGTATCCAGAAGCTTTCTGCTGCATTTCGCTCCGACCCGGCTGATCGGAGCTTCCATCAGATTCCAAGCCTGTGGAATAGGTCTTCAAGCACCCATGCTCTGGGAAGCATTCTCCAACCCATTGGCTGCTCAGGTTTGCTAGTCTTTCTCCTCCGAAAATTTGTGGACTTCTTTACGAATTTGAATGTGGAAAGTCAAGATCATCTTGCTGGTGAGGCTCAAGTGAAGCAATGCCCTCCTTTTAGTCTTGTTAATCATGCTTTTGCCGTTGCCGTGGGAAAGGTTGTGGAAGGGTACATGCGTGCACTGGATACCTTGCATGCATCAGTGGGTTTGAGGCGCTCTTCGCGTTCGTCTTCTGTAGTGGGATGTATGAACAGTGTAGTGTATTCTGATCTAACTATGTTGGAGTTGTATTTGCACACGAAAGAATTGAGGACTCAGATCGAATCCCTTACAAACTTATGTAACGTGTATCAGTTCTCTAGTTGCTTCTCAGTATCTTCTTTGGAAGAATTGGTTACAAAAGCAAAATCTGAATTTTCTAAGTTCTACAGAGGAGGGCATTTGCTCACATATCTGTATACCCAATTACAGGTTTCTGATCCTGCTCATCGTCCTCTACTCAAATTTATTTTCCTTCGTACATTTGAACCATATTGTGGGTTTATTAGATCATGGATTTTCAAAGCTGAGATCAGTGACCCTTACAAGGAGTTTGTGGTAGAATATGTTGACAGTATGTCTCCAAATCAATGCGGTAAAGCCGGAAACCCGATTGACTTCCCATTGGCAACTATTAGGGAACGAGATGGTGTTGCTGTTCCTTATTTTTTGAAGGACTTCTTGATTCCACTAGTTCGAGCTGGTCAGCAACTGCAAGTTCTAGTGAAATTGCTTGAATTGTGTACTTTTGTTGCCACCAAAGACCACACTTATGAGGGGTTTCTTCCCTGCTGGAGTGGGTTTTCGGGCAATAGTCCATGTTATTCATCTCCATTGACTTTCAGCAAAGAAAATATTGAGGCCATGATACTTTCAAGGGACACTTACTACAAAAAGATGCAAGAAAAACTAAAGAATCTTTCAGCGAAATTTGAATTCAGATATCAACAGGTAGTTCCACAAGGCAGAGTTCTCTTGGATAATAATGGAAGGAGTTCCACCATCCCAGTTCTGTTCACATTGGATGACAAAGTTGATAGTTTTATTGCTTCTCCAACAGATGATGAAAGGGAGTCACATGTGGCAGTTCTTGATTTGGATTTTGATGAATTAAGTGCAAGGGATGGTCTATCTGATCTGGTGGATACATACGAGTCATCTGAGTGTTCAACCTCCAGTTATTCTGAAGAGCAAGATGTGTTGGAGCAGAATATTGAGCTTCCCAATAATATCAATGAGCTGGAACAAAAATATGTATCTGCTTTAAGCTTTTCAATGAGTAGTCCTGTTGATAATTTGCAAAATCCTCGTGTATGTGAAGATTCATGCCATATCATAACTGACCCGAATAGATTTTGTGAAGAAAGAGATTCCCCTGTACATTCTCATCATGAAGGAATGTTTACAAGCCAGATATCTGTGCCCGTCAAACCAAAGGAGTCAAACTGGTCTTGTATGTCTAGCGCTCAGTTGGTTGATTGTATATCTGCTAAGGATTGGCCAGAAAGTAGTTCATTTGAGAGTTATTCTGTCATTGATAAAGAGTACAGTGATGGTCCAAGGTCACATCCAATGGGTTCTGCCTCAAAGGTGAATGAGAGAATCATAGGGGCCTTAAAGGAAGGTACATTTAAAAAAGGAATTGAGACTCATGCTTTAATTGAAGAAGCCTCTGGCAAGAATCAATCTCGAAACGCTACATATACTTCTTCAGATTTATTGACGTTACAACGTTGGAAGGTTAACTCCCATAACAATTTTCTCAGCATGAACCCAATGTTGATAAAAACTAACTTAATTCATCTGATAACCAAGCCAGGACAGAGGCACATAACAGACTTGGGGGACTATTTGCCTTACTTTGACTTTTCTTTCATAAAGGACCCTTTTAAGGTGTATCTGGAAAAGCCGCCTGCAGGGCTCTCAGACTCCAGTGCCTCAGCAAGCAGTGTCAGGAGGGATCACCTTGGCAAACAAGGTTATGGTGGACAGAATGTCTTGATTGATAAAGCCAAAGTGTCTGTTTTTCTTCCAATTTCAGACACAAAGGACCACAACCAAGCAGACGCAAATTTAACAAATGTTTCTGGTGGTAGTTGTTGGGAGAGTTTGCTTGGTAGATTTAGTGACACTGTCGTTAATAGAGTTGAAGATCACAGACAATGCAAGCCAGAGAATTTTGAGATACCACTTGATTTTATTATTCACAAATGCCTTCTTCAGGAAATCATGCTTCAATATAAGTATGTCAGCAAGCTAACTATTAAGTTGCTTGAAGAAGGGTTTGATTTGCAAGAACATTTACTGGCTCTGCGGCGCTACCACTTTATGGAACTAGCGGACTGGGCTGATTTGTTTATTATGTCCCTGTGGCATCATAAATGGTGCGTTACAGAGGCAGATCATAGACTTTCAGAAATTCAAGGTTTACTTGAGTCATCAGTTCAGAGGTCATCATGTGAACGTGACCTTCATAAGGACAGGTTATTTGTGTACATGAAGGGACATGATGCAATGACTCTTTCTGCATCTGCTAGTGGAGTCCATTCCTTCAACTTTCTTGGTTTGGGTTATCAAGTGGATTGGCCCATAAGTATTGTTTTGAGTCCTGGTGCATTGAATATATATGCTGAGATATTCAGTTTTCTGATGCAAGTGAAGCTTGCTATATTCTCATTGACTGATGTATGGCGCCCATTAAAGGATTTGGTACATTCAATTAGTCAGAATAATCACTCTGAACAATACAAAACAGGAGCGGGCCATTTTAATGCATTAGTGAAGATGAGGCACCAGGTCAATCATTTTGTATCTACACTACAGCAGTATGTGGAGTCACAGCTATCACATGTATCATGGTGCAGGTTTCTATACTCACTTAAGCATGAGGTCAAAGATATGATGGATCTTCAGTCTGCACATATGGCATATTTAACAGATTCGCTTGACATATGTTTCCTATCTGATGAAACACGACCTATAGCTCGCATCATTGAAAGCATTCTGCAGTGTGCTCTTGACTTCAGGTCTTGTCTGACTGGGGGAATGTGGGATGTTGGAACAGGTGAAGGGAATAGAACTGCAAGGCTTTCTGGAATGAATATATCCCAGGTGGTTGCTATAAAACAAACCTTTGACAAGAACATGAAAGAACTGCACCTCTGTTACCTAAAGTCACCGAAACATGGGGAGTTTGGACTTTCTCATTTTTGGGAATACCTCAACTACAACAAGTATTACTCAGACGTTGGTAATGAAATGGCCTTCTATGCTTTCGCAATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0000278 GO:0000280 GO:0000923 GO:0000930 GO:0000931 GO:0003674 GO:0005198 GO:0005200 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005813 GO:0005815 GO:0005816 GO:0005822 GO:0005825 GO:0005829 GO:0005856 GO:0006810 GO:0006928 GO:0006996 GO:0007010 GO:0007017 GO:0007018 GO:0007020 GO:0007049 GO:0007051 GO:0007052 GO:0007097 GO:0007098 GO:0007163 GO:0008017 GO:0008092 GO:0008150 GO:0008274 GO:0008275 GO:0008360 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0022402 GO:0022414 GO:0022603 GO:0022604 GO:0022607 GO:0031021 GO:0031023 GO:0031109 GO:0031122 GO:0032153 GO:0032155 GO:0032991 GO:0034453 GO:0034622 GO:0034631 GO:0043015 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044732 GO:0046785 GO:0046907 GO:0048285 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051179 GO:0051225 GO:0051234 GO:0051258 GO:0051298 GO:0051321 GO:0051415 GO:0051418 GO:0051640 GO:0051641 GO:0051647 GO:0051649 GO:0051656 GO:0061496 GO:0061497 GO:0065003 GO:0065007 GO:0065008 GO:0070925 GO:0071840 GO:0071957 GO:0071963 GO:0072393 GO:0090307 GO:0097435 GO:0098863 GO:0099098 GO:0099111 GO:0140014 GO:1902850 GO:1903047 GO:1990734

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Spc97_Spc98

Protein Analysis

1252

Amino Acids

141.25

Weight (kDa)

5.88

Isoelectric Point (pI)

46.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GCP_N_terminal	PF17681	93 - 353	3.8e-20	Gamma tubulin complex component N-terminal
GCP_C_terminal	PF04130	921 - 1237	1.6e-65	Gamma tubulin complex component C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003027)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43610 AT3G43610 AT3G43610
fragaria_vesca	FvH4_3g27030 FvH4_3g27031 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990 FvH4_4g33990
malus_domestica	MD03G1162300.v1.1 MD03G1162400.v1.1 MD11G1178600.v1.1
prunus_persica	Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1 Prupe.6G151400_v2.0.a1
pyrus_communis	pycom11g15400
rosa_chinensis	RchiOBHm_Chr5g0049541
rosa_laevigata	RLG00000034625
rosa_multiflora	Rmu_co8383485.1_g000001 Rmu_sc0013032.1_g000004
rosa_roxburghii	Rroxscaffold_1G00032160
rosa_rugosa	Rorug05G0248900 Rorug05G0249000
rosa_samantha	Rh5AG325500 Rh5BG336700 Rh5CG361500 Rh5DG348800
rosa_wichuraiana	Rw5G030750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	3324
AccB1I	GGYRCC	2 cut(s)	3162, 3261
AccB7I	CCANNNNNTGG	3 cut(s)	406, 968, 2800
AccBSI	CCGCTC	1 cut(s)	3230
AccI	GTMKAC	1 cut(s)	890
AccII	CGCG	1 cut(s)	655
AciI	CCGC	8 cut(s)	64, 177, 237, 1065, 2381, 2785, 2810, 3230
AclI	AACGTT	1 cut(s)	2203
AclWI	GGATC	4 cut(s)	157, 905, 2439, 3384
AcoI	YGGCCR	1 cut(s)	1970
AcsI	RAATTY	9 cut(s)	464, 484, 845, 935, 1400, 1406, 2542, 2647, 2889
AcuI	CTGAAG	5 cut(s)	1677, 2166, 2675, 3365, 3478
AcyI	GRCGYC	1 cut(s)	3163
AfaI	GTAC	8 cut(s)	602, 952, 1216, 1851, 2018, 2098, 2966, 3183
AfeI	AGCGCT	1 cut(s)	1936
AflII	CTTAAG	1 cut(s)	3350
AflIII	ACRYGT	3 cut(s)	777, 1549, 3319
AhdI	GACNNNNNGTC	3 cut(s)	1048, 2465, 3496
AhlI	ACTAGT	1 cut(s)	1162
AjnI	CCWGG	4 cut(s)	2287, 3079, 3264, 3579
Alw21I	GWGCWC	2 cut(s)	613, 3487
Alw26I	GTCTC	4 cut(s)	11, 247, 1056, 2111
Alw44I	GTGCAC	1 cut(s)	609
AlwI	GGATC	4 cut(s)	157, 905, 2439, 3384
AlwNI	CAGNNNCTG	1 cut(s)	1183
Aor51HI	AGCGCT	1 cut(s)	1936
AoxI	GGCC	6 cut(s)	1332, 1970, 2082, 3056, 3232, 3732
ApaLI	GTGCAC	1 cut(s)	609
ApeKI	GCWGC	3 cut(s)	66, 326, 432
ApoI	RAATTY	9 cut(s)	464, 484, 845, 935, 1400, 1406, 2542, 2647, 2889
ArsI	GACNNNNNNTTYG	4 cut(s)	77, 109, 2942, 2974
Asp700I	GAANNNNTTC	3 cut(s)	1148, 1465, 3471
AspLEI	GCGC	4 cut(s)	648, 1937, 2790, 3165
AspS9I	GGNCC	7 cut(s)	54, 2027, 2082, 2353, 2521, 3057, 3232
AsuC2I	CCSGG	1 cut(s)	344
AsuHPI	GGTGA	6 cut(s)	271, 530, 2074, 2426, 3548, 3639
AvaII	GGWCC	4 cut(s)	54, 2027, 2353, 2521
BaeGI	GKGCMC	3 cut(s)	64, 613, 1896
BaeI	ACNNNNGTAYC	2 cut(s)	592, 625
BalI	TGGCCA	1 cut(s)	1972
BanI	GGYRCC	2 cut(s)	3162, 3261
BanII	GRGCYC	1 cut(s)	2394
BauI	CACGAG	1 cut(s)	1779
BbsI	GAAGAC	2 cut(s)	381, 654
Bbv12I	GWGCWC	2 cut(s)	613, 3487
BbvCI	CCTCAGC	1 cut(s)	2410
BbvI	GCAGC	3 cut(s)	78, 313, 419
BccI	CCATC	6 cut(s)	369, 1112, 1481, 1589, 2018, 3367
BceAI	ACGGC	3 cut(s)	224, 557, 563
BcgI	CGANNNNNNTGC	2 cut(s)	1760, 1794
BciT130I	CCWGG	4 cut(s)	2289, 3081, 3266, 3581
BciVI	GTATCC	3 cut(s)	320, 610, 1609
BcnI	CCSGG	1 cut(s)	344
BcoDI	GTCTC	4 cut(s)	11, 247, 1056, 2111
BcuI	ACTAGT	1 cut(s)	1162
BfaI	CTAG	7 cut(s)	446, 792, 1163, 1193, 1932, 2807, 3006
BfmI	CTRYAG	6 cut(s)	666, 859, 2385, 3290, 3450, 3476
BfoI	RGCGCY	4 cut(s)	649, 1938, 2791, 3166
BfrI	CTTAAG	1 cut(s)	3350
BfuAI	ACCTGC	1 cut(s)	3324
BfuI	GTATCC	3 cut(s)	320, 610, 1609
BglI	GCCNNNNNGGC	1 cut(s)	2389
BisI	GCNGC	6 cut(s)	67, 178, 327, 433, 2381, 2786
BlsI	GCNGC	6 cut(s)	68, 179, 328, 434, 2382, 2787
Bme1390I	CCNGG	5 cut(s)	344, 2289, 3081, 3266, 3581
Bme18I	GGWCC	4 cut(s)	54, 2027, 2353, 2521
BmeRI	GACNNNNNGTC	3 cut(s)	1048, 2465, 3496
BmgT120I	GGNCC	7 cut(s)	54, 2027, 2082, 2353, 2521, 3057, 3232
BmiI	GGNNCC	4 cut(s)	2083, 2355, 3164, 3263
BmrFI	CCNGG	5 cut(s)	344, 2289, 3081, 3266, 3581
BmrI	ACTGGG	3 cut(s)	1472, 2824, 3519
BmsI	GCATC	8 cut(s)	107, 638, 1359, 2854, 2971, 3008, 3111, 3468
BmuI	ACTGGG	3 cut(s)	1472, 2824, 3519
BpiI	GAAGAC	2 cut(s)	381, 654
BpmI	CTGGAG	3 cut(s)	1285, 1630, 2386
Bpu10I	CCTNAGC	3 cut(s)	436, 1962, 2410
BpuEI	CTTGAG	2 cut(s)	510, 2924
BpuMI	CCSGG	1 cut(s)	344
Bsa29I	ATCGAT	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	3163
BsaJI	CCNNGG	6 cut(s)	134, 246, 579, 2030, 2437, 3579
BsaXI	ACNNNNNCTCC	4 cut(s)	188, 218, 218, 248
Bse1I	ACTGG	8 cut(s)	618, 1478, 1647, 1922, 2403, 2781, 2819, 3514
Bse3DI	GCAATG	2 cut(s)	542, 2991
BseBI	CCWGG	4 cut(s)	2289, 3081, 3266, 3581
BseCI	ATCGAT	1 cut(s)	161
BseDI	CCNNGG	6 cut(s)	134, 246, 579, 2030, 2437, 3579
BseGI	GGATG	8 cut(s)	98, 130, 680, 1473, 1501, 1600, 2038, 3529
BseMI	GCAATG	2 cut(s)	542, 2991
BseNI	ACTGG	8 cut(s)	618, 1478, 1647, 1922, 2403, 2781, 2819, 3514
BseRI	GAGGAG	4 cut(s)	196, 300, 446, 879
BseSI	GKGCMC	3 cut(s)	64, 613, 1896
BseXI	GCAGC	3 cut(s)	78, 313, 419
BsgI	GTGCAG	3 cut(s)	3352, 3372, 3611
Bsh1236I	CGCG	1 cut(s)	655
BshFI	GGCC	6 cut(s)	1334, 1972, 2084, 3058, 3234, 3734
BshNI	GGYRCC	2 cut(s)	3162, 3261
BshVI	ATCGAT	1 cut(s)	161
BsiHKAI	GWGCWC	2 cut(s)	613, 3487
BsiSI	CCGG	2 cut(s)	344, 1074
BslFI	GGGAC	5 cut(s)	205, 1364, 2330, 2821, 2988
BsmAI	GTCTC	4 cut(s)	11, 247, 1056, 2111
BsmBI	CGTCTC	2 cut(s)	11, 247
BsmFI	GGGAC	5 cut(s)	205, 1364, 2330, 2821, 2988
BsmI	GAATGC	3 cut(s)	280, 414, 3471
BsnI	GGCC	6 cut(s)	1334, 1972, 2084, 3058, 3234, 3734
Bsp1286I	GDGCHC	5 cut(s)	64, 613, 1896, 2394, 3487
Bsp1407I	TGTACA	2 cut(s)	1849, 2964
Bsp19I	CCATGG	1 cut(s)	134
BspACI	CCGC	8 cut(s)	64, 177, 237, 1065, 2381, 2785, 2810, 3230
BspANI	GGCC	6 cut(s)	1334, 1972, 2084, 3058, 3234, 3734
BspDI	ATCGAT	1 cut(s)	161
BspFNI	CGCG	1 cut(s)	655
BspHI	TCATGA	1 cut(s)	1861
BspLI	GGNNCC	4 cut(s)	2083, 2355, 3164, 3263
BspMAI	CTGCAG	2 cut(s)	2389, 3480
BspMI	ACCTGC	1 cut(s)	3324
BspPI	GGATC	4 cut(s)	157, 905, 2439, 3384
BspQI	GCTCTTC	2 cut(s)	655, 1653
BspT107I	GGYRCC	2 cut(s)	3162, 3261
BspTI	CTTAAG	1 cut(s)	3350
BsrBI	CCGCTC	1 cut(s)	3230
BsrDI	GCAATG	2 cut(s)	542, 2991
BsrGI	TGTACA	2 cut(s)	1849, 2964
BsrI	ACTGG	8 cut(s)	618, 1478, 1647, 1922, 2403, 2781, 2819, 3514
BssECI	CCNNGG	6 cut(s)	134, 246, 579, 2030, 2437, 3579
BssNAI	GTATAC	1 cut(s)	891
BssNI	GRCGYC	1 cut(s)	3163
BssSI	CACGAG	1 cut(s)	1779
BssT1I	CCWWGG	3 cut(s)	134, 2030, 2437
Bst1107I	GTATAC	1 cut(s)	891
Bst2BI	CACGAG	1 cut(s)	1779
Bst2UI	CCWGG	4 cut(s)	2289, 3081, 3266, 3581
Bst4CI	ACNGT	5 cut(s)	82, 686, 1046, 2021, 2605
Bst6I	CTCTTC	3 cut(s)	214, 655, 1653
BstACI	GRCGYC	1 cut(s)	3163
BstAFI	CTTAAG	1 cut(s)	3350
BstAUI	TGTACA	2 cut(s)	1849, 2964
BstDSI	CCRYGG	2 cut(s)	134, 579
BstENI	CCTNNNNNAGG	2 cut(s)	2690, 2945
BstF5I	GGATG	8 cut(s)	98, 130, 680, 1473, 1501, 1600, 2038, 3529
BstFNI	CGCG	1 cut(s)	655
BstH2I	RGCGCY	4 cut(s)	649, 1938, 2791, 3166
BstHHI	GCGC	4 cut(s)	648, 1937, 2790, 3165
BstMAI	GTCTC	4 cut(s)	11, 247, 1056, 2111
BstMWI	GCNNNNNNNGC	8 cut(s)	275, 521, 652, 2389, 2816, 3130, 3395, 3740
BstNI	CCWGG	4 cut(s)	2289, 3081, 3266, 3581
BstNSI	RCATGY	4 cut(s)	607, 629, 1553, 3323
BstSCI	CCNGG	5 cut(s)	342, 2287, 3079, 3264, 3579
BstSFI	CTRYAG	6 cut(s)	666, 859, 2385, 3290, 3450, 3476
BstSLI	GKGCMC	3 cut(s)	64, 613, 1896
BstUI	CGCG	1 cut(s)	655
BstV1I	GCAGC	3 cut(s)	78, 313, 419
BstV2I	GAAGAC	2 cut(s)	381, 654
BstX2I	RGATCY	1 cut(s)	3376
BstXI	CCANNNNNNTGG	3 cut(s)	153, 378, 428
BstYI	RGATCY	1 cut(s)	3376
BstZ17I	GTATAC	1 cut(s)	891
Bsu15I	ATCGAT	1 cut(s)	161
BsuI	GTATCC	3 cut(s)	320, 610, 1609
BsuRI	GGCC	6 cut(s)	1334, 1972, 2084, 3058, 3234, 3734
BsuTUI	ATCGAT	1 cut(s)	161
BtgI	CCRYGG	2 cut(s)	134, 579
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	8 cut(s)	98, 130, 680, 1473, 1501, 1600, 2038, 3529
BtsI	GCAGTG	2 cut(s)	2425, 3485
BveI	ACCTGC	1 cut(s)	3324
CaiI	CAGNNNCTG	1 cut(s)	1183
CciI	TCATGA	1 cut(s)	1861
CfoI	GCGC	4 cut(s)	648, 1937, 2790, 3165
Cfr13I	GGNCC	7 cut(s)	54, 2027, 2082, 2353, 2521, 3057, 3232
ClaI	ATCGAT	1 cut(s)	161
CseI	GACGC	1 cut(s)	2546
CsiI	ACCWGGT	1 cut(s)	3264
Csp6I	GTAC	8 cut(s)	601, 951, 1215, 1850, 2017, 2097, 2965, 3182
CviQI	GTAC	8 cut(s)	601, 951, 1215, 1850, 2017, 2097, 2965, 3182
DinI	GGCGCC	1 cut(s)	3164
DraI	TTTAAA	1 cut(s)	2104
DriI	GACNNNNNGTC	3 cut(s)	1048, 2465, 3496
EaeI	YGGCCR	1 cut(s)	1970
Eam1104I	CTCTTC	3 cut(s)	214, 655, 1653
Eam1105I	GACNNNNNGTC	3 cut(s)	1048, 2465, 3496
EarI	CTCTTC	3 cut(s)	214, 655, 1653
EciI	GGCGGA	1 cut(s)	226
Eco130I	CCWWGG	3 cut(s)	134, 2030, 2437
Eco24I	GRGCYC	1 cut(s)	2394
Eco32I	GATATC	2 cut(s)	1415, 1887
Eco47I	GGWCC	4 cut(s)	54, 2027, 2353, 2521
Eco47III	AGCGCT	1 cut(s)	1936
Eco57I	CTGAAG	5 cut(s)	1677, 2166, 2675, 3365, 3478
EcoNI	CCTNNNNNAGG	2 cut(s)	2690, 2945
EcoO109I	RGGNCCY	3 cut(s)	54, 2082, 2353
EcoRI	GAATTC	1 cut(s)	1406
EcoRII	CCWGG	4 cut(s)	2287, 3079, 3264, 3579
EcoRV	GATATC	2 cut(s)	1415, 1887
EcoT14I	CCWWGG	3 cut(s)	134, 2030, 2437
EcoT22I	ATGCAT	2 cut(s)	631, 3247
EcoT38I	GRGCYC	1 cut(s)	2394
EgeI	GGCGCC	1 cut(s)	3164
EheI	GGCGCC	1 cut(s)	3164
ErhI	CCWWGG	3 cut(s)	134, 2030, 2437
Esp3I	CGTCTC	2 cut(s)	11, 247
FaqI	GGGAC	5 cut(s)	205, 1364, 2330, 2821, 2988
FauI	CCCGC	2 cut(s)	71, 3223
FauNDI	CATATG	2 cut(s)	3393, 3422
FblI	GTMKAC	1 cut(s)	890
Fnu4HI	GCNGC	6 cut(s)	67, 178, 327, 433, 2381, 2786
FokI	GGATG	8 cut(s)	85, 117, 687, 1460, 1508, 1607, 2025, 3536
FriOI	GRGCYC	1 cut(s)	2394
Fsp4HI	GCNGC	6 cut(s)	67, 178, 327, 433, 2381, 2786
FspBI	CTAG	7 cut(s)	446, 792, 1163, 1193, 1932, 2807, 3006
GlaI	GCGC	4 cut(s)	647, 1936, 2789, 3164
GluI	GCNGC	6 cut(s)	67, 178, 327, 433, 2381, 2786
GsuI	CTGGAG	3 cut(s)	1285, 1630, 2386
HaeII	RGCGCY	4 cut(s)	649, 1938, 2791, 3166
HaeIII	GGCC	6 cut(s)	1334, 1972, 2084, 3058, 3234, 3734
HapII	CCGG	2 cut(s)	344, 1074
HgaI	GACGC	1 cut(s)	2546
HhaI	GCGC	4 cut(s)	648, 1937, 2790, 3165
Hin1I	GRCGYC	1 cut(s)	3163
Hin6I	GCGC	4 cut(s)	646, 1935, 2788, 3163
HinP1I	GCGC	4 cut(s)	646, 1935, 2788, 3163
HincII	GTYRAC	2 cut(s)	1042, 2215
HindII	GTYRAC	2 cut(s)	1042, 2215
HindIII	AAGCTT	3 cut(s)	317, 1738, 3131
HpaI	GTTAAC	1 cut(s)	2215
HpaII	CCGG	2 cut(s)	344, 1074
HphI	GGTGA	6 cut(s)	271, 530, 2074, 2426, 3548, 3639
HpyCH4III	ACNGT	5 cut(s)	82, 686, 1046, 2021, 2605
HpyCH4IV	ACGT	5 cut(s)	777, 2195, 2203, 2935, 3717
HpyF10VI	GCNNNNNNNGC	8 cut(s)	275, 521, 652, 2389, 2816, 3130, 3395, 3740
HpySE526I	ACGT	5 cut(s)	777, 2195, 2203, 2935, 3717
Hsp92I	GRCGYC	1 cut(s)	3163
HspAI	GCGC	4 cut(s)	646, 1935, 2788, 3163
KasI	GGCGCC	1 cut(s)	3162
KspAI	GTTAAC	1 cut(s)	2215
LguI	GCTCTTC	2 cut(s)	655, 1653
LmnI	GCTCC	4 cut(s)	341, 354, 1675, 3227
Lsp1109I	GCAGC	3 cut(s)	78, 313, 419
LweI	GCATC	8 cut(s)	107, 638, 1359, 2854, 2971, 3008, 3111, 3468
MabI	ACCWGGT	1 cut(s)	3264
MaeI	CTAG	7 cut(s)	446, 792, 1163, 1193, 1932, 2807, 3006
MaeII	ACGT	5 cut(s)	777, 2195, 2203, 2935, 3717
MbiI	CCGCTC	1 cut(s)	3230
MflI	RGATCY	1 cut(s)	3376
MhlI	GDGCHC	5 cut(s)	64, 613, 1896, 2394, 3487
MlsI	TGGCCA	1 cut(s)	1972
MluNI	TGGCCA	1 cut(s)	1972
Mly113I	GGCGCC	1 cut(s)	3163
MmeI	TCCRAC	8 cut(s)	170, 363, 445, 693, 1550, 1653, 2186, 3508
Mox20I	TGGCCA	1 cut(s)	1972
Mph1103I	ATGCAT	2 cut(s)	631, 3247
MroXI	GAANNNNTTC	3 cut(s)	1148, 1465, 3471
MscI	TGGCCA	1 cut(s)	1972
MslI	CAYNNNNRTG	3 cut(s)	1242, 1633, 3240
Msp20I	TGGCCA	1 cut(s)	1972
MspCI	CTTAAG	1 cut(s)	3350
MspI	CCGG	2 cut(s)	344, 1074
MspR9I	CCNGG	5 cut(s)	344, 2289, 3081, 3266, 3581
Mva1269I	GAATGC	3 cut(s)	280, 414, 3471
MvaI	CCWGG	4 cut(s)	2289, 3081, 3266, 3581
MvnI	CGCG	1 cut(s)	655
MwoI	GCNNNNNNNGC	8 cut(s)	275, 521, 652, 2389, 2816, 3130, 3395, 3740
NarI	GGCGCC	1 cut(s)	3163
NciI	CCSGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	134
NdeI	CATATG	2 cut(s)	3393, 3422
NlaIV	GGNNCC	4 cut(s)	2083, 2355, 3164, 3263
NmuCI	GTSAC	7 cut(s)	1007, 1545, 2034, 2597, 2936, 3306, 3645
NsiI	ATGCAT	2 cut(s)	631, 3247
NspI	RCATGY	4 cut(s)	607, 629, 1553, 3323
PaeI	GCATGC	1 cut(s)	629
PagI	TCATGA	1 cut(s)	1861
PciI	ACATGT	2 cut(s)	1549, 3319
PciSI	GCTCTTC	2 cut(s)	655, 1653
PctI	GAATGC	3 cut(s)	280, 414, 3471
PdmI	GAANNNNTTC	3 cut(s)	1148, 1465, 3471
PflFI	GACNNNGTC	1 cut(s)	2603
PflMI	CCANNNNNTGG	3 cut(s)	406, 968, 2800
PkrI	GCNGC	6 cut(s)	68, 179, 328, 434, 2382, 2787
PluTI	GGCGCC	1 cut(s)	3166
PpuMI	RGGWCCY	2 cut(s)	54, 2353
PscI	ACATGT	2 cut(s)	1549, 3319
Psp1406I	AACGTT	1 cut(s)	2203
Psp5II	RGGWCCY	2 cut(s)	54, 2353
Psp6I	CCWGG	4 cut(s)	2287, 3079, 3264, 3579
PspGI	CCWGG	4 cut(s)	2287, 3079, 3264, 3579
PspN4I	GGNNCC	4 cut(s)	2083, 2355, 3164, 3263
PspPI	GGNCC	7 cut(s)	54, 2027, 2082, 2353, 2521, 3057, 3232
PspPPI	RGGWCCY	2 cut(s)	54, 2353
PstI	CTGCAG	2 cut(s)	2389, 3480
PstNI	CAGNNNCTG	1 cut(s)	1183
PsuI	RGATCY	1 cut(s)	3376
PsyI	GACNNNGTC	1 cut(s)	2603
RsaI	GTAC	8 cut(s)	602, 952, 1216, 1851, 2018, 2098, 2966, 3183
RsaNI	GTAC	8 cut(s)	601, 951, 1215, 1850, 2017, 2097, 2965, 3182
RseI	CAYNNNNRTG	3 cut(s)	1242, 1633, 3240
SapI	GCTCTTC	2 cut(s)	655, 1653
SatI	GCNGC	6 cut(s)	67, 178, 327, 433, 2381, 2786
Sau96I	GGNCC	7 cut(s)	54, 2027, 2082, 2353, 2521, 3057, 3232
SbfI	CCTGCAGG	1 cut(s)	2389
ScrFI	CCNGG	5 cut(s)	344, 2289, 3081, 3266, 3581
SdaI	CCTGCAGG	1 cut(s)	2389
SduI	GDGCHC	5 cut(s)	64, 613, 1896, 2394, 3487
SexAI	ACCWGGT	1 cut(s)	3264
SfaNI	GCATC	8 cut(s)	107, 638, 1359, 2854, 2971, 3008, 3111, 3468
SfcI	CTRYAG	6 cut(s)	666, 859, 2385, 3290, 3450, 3476
SfoI	GGCGCC	1 cut(s)	3164
SinI	GGWCC	4 cut(s)	54, 2027, 2353, 2521
SmiMI	CAYNNNNRTG	3 cut(s)	1242, 1633, 3240
SmlI	CTYRAG	3 cut(s)	525, 2903, 3350
SmoI	CTYRAG	3 cut(s)	525, 2903, 3350
SpeI	ACTAGT	1 cut(s)	1162
SphI	GCATGC	1 cut(s)	629
Sse8387I	CCTGCAGG	1 cut(s)	2389
SsiI	CCGC	8 cut(s)	64, 177, 237, 1065, 2381, 2785, 2810, 3230
SspDI	GGCGCC	1 cut(s)	3162
SspI	AATATT	2 cut(s)	1327, 1684
SspMI	CTAG	7 cut(s)	446, 792, 1163, 1193, 1932, 2807, 3006
StyD4I	CCNGG	5 cut(s)	342, 2287, 3079, 3264, 3579
StyI	CCWWGG	3 cut(s)	134, 2030, 2437
TaaI	ACNGT	5 cut(s)	82, 686, 1046, 2021, 2605
TaiI	ACGT	5 cut(s)	780, 2198, 2206, 2938, 3720
TaqI	TCGA	7 cut(s)	50, 161, 225, 291, 753, 1168, 2161
TatI	WGTACW	4 cut(s)	1214, 1849, 2016, 2964
TauI	GCSGC	3 cut(s)	180, 2383, 2788
TseFI	GTSAC	7 cut(s)	1007, 1545, 2034, 2597, 2936, 3306, 3645
TseI	GCWGC	3 cut(s)	66, 326, 432
Tsp45I	GTSAC	7 cut(s)	1007, 1545, 2034, 2597, 2936, 3306, 3645
Tth111I	GACNNNGTC	1 cut(s)	2603
Van91I	CCANNNNNTGG	3 cut(s)	406, 968, 2800
Vha464I	CTTAAG	1 cut(s)	3350
VneI	GTGCAC	1 cut(s)	609
VpaK11BI	GGWCC	4 cut(s)	54, 2027, 2353, 2521
XagI	CCTNNNNNAGG	2 cut(s)	2690, 2945
XapI	RAATTY	9 cut(s)	464, 484, 845, 935, 1400, 1406, 2542, 2647, 2889
XceI	RCATGY	4 cut(s)	607, 629, 1553, 3323
XmiI	GTMKAC	1 cut(s)	890
XmnI	GAANNNNTTC	3 cut(s)	1148, 1465, 3471
XspI	CTAG	7 cut(s)	446, 792, 1163, 1193, 1932, 2807, 3006
Zsp2I	ATGCAT	2 cut(s)	631, 3247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.