FvH4_3g27580

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0004761
Physical Location & Seq
Forward (+)
20634196 .. 20642509
8314 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g27580.t4

Sequence Viewer

Length: 1113 bp
ATGTCCCAACTTGGTTCCACTAGTGTATCACTGGTATCCATGGCTATGAGGACTCTAGGTGATGTGGGAGTTCAAATTGTTTGGTCATGCACAGAATCAATGTCTGTGATTGAAAAGGCGAAAAATCGAGAGAGGAATGAATTAGAATATCCAAGCAAAAATTCGAAAATGAAACATGAACCGAGTAAGATCAGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTACGTTGCTCGTTCTTCTGAAATTTGGACAAAATTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTGGGAGGCATCTGCTACTTTGGAAGTCAGCGATTCATTGGTGCGGTTAATGGGGTTCTGGTAACTGGAATCATCATATCTTTTGCTGCTCTTGTGGCAGTTGCAAGTGGATACCTACAATGGAGTGCACTTTTAAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTATTCTATCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCAATTGTTCTAGGCACAACCATACCACTTATTTTATTTCTAGTGTGGGATGCTGTGATTCTAGGAACCATCAGTCATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGGAATCAACAAATGTTGCTGTTGGACCAGTTGAGGTTTTCTCAATTTTCGCTATCTCGACGTCATATATCGGATTCGTTTTGGGTCTTTGCGATTTCCTTTCTGACTTGCTGAAACTTCCGGCTGGTCAGAGCAGGCCTGTGCTGCCGTACCTTTTCACATTGATTCCACCAGTAGTGCTGTCATTGCTAGACCCAGAAATATTCTTTAAAGCCTTGGATTTCGCTGGAACTTATGGAGTGCTCCTGCTGTTCGGAATCCTTCCAGCTGTTATGTCTTGGTCCGATAGGTACTCAAGTTCATCCATAGCTGTGAAAGTGCCACGGTTAGTTCCGGGAGGAAGGTTCACTCTTTCACTCATAGTTGCAGGTGCTGGATGTGTCATTTTCTCAGAAATTTTTGACAAGTTAAGCAACCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

371

Amino Acids

40.2

Weight (kDa)

6.32

Isoelectric Point (pI)

37.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 7 - 322 3.5e-54 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1049
AatII GACGTC 1 cut(s) 755
Acc36I ACCTGC 1 cut(s) 1049
AccI GTMKAC 1 cut(s) 507
AciI CCGC 1 cut(s) 359
AclWI GGATC 2 cut(s) 671, 684
AcsI RAATTY 4 cut(s) 160, 255, 266, 1086
AcyI GRCGYC 1 cut(s) 752
AfaI GTAC 4 cut(s) 203, 535, 842, 983
AgsI TTSAA 5 cut(s) 74, 113, 545, 573, 653
AhlI ACTAGT 1 cut(s) 20
AjuI GAANNNNNNNTTGG 2 cut(s) 145, 177
AluBI AGCT 3 cut(s) 467, 959, 1001
AluI AGCT 3 cut(s) 467, 959, 1001
Alw21I GWGCWC 2 cut(s) 445, 936
Alw26I GTCTC 1 cut(s) 543
Alw44I GTGCAC 1 cut(s) 441
AlwI GGATC 2 cut(s) 671, 684
AlwNI CAGNNNCTG 1 cut(s) 1064
AoxI GGCC 1 cut(s) 827
ApaLI GTGCAC 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 401, 835
ApoI RAATTY 4 cut(s) 160, 255, 266, 1086
AspS9I GGNCC 2 cut(s) 716, 972
AsuC2I CCSGG 1 cut(s) 1026
AsuHPI GGTGA 1 cut(s) 71
AsuII TTCGAA 1 cut(s) 164
AvaII GGWCC 2 cut(s) 716, 972
BaeGI GKGCMC 1 cut(s) 445
BaeI ACNNNNGTAYC 4 cut(s) 9, 42, 973, 1006
BamHI GGATCC 1 cut(s) 676
BanII GRGCYC 1 cut(s) 662
Bbv12I GWGCWC 2 cut(s) 445, 936
BbvI GCAGC 2 cut(s) 388, 822
BccI CCATC 1 cut(s) 647
BceAI ACGGC 1 cut(s) 823
BciVI GTATCC 2 cut(s) 46, 419
BcnI CCSGG 1 cut(s) 1026
BcoDI GTCTC 1 cut(s) 543
BcuI ACTAGT 1 cut(s) 20
BfaI CTAG 6 cut(s) 21, 56, 581, 611, 632, 881
BfuAI ACCTGC 1 cut(s) 1049
BfuI GTATCC 2 cut(s) 46, 419
BglII AGATCT 1 cut(s) 538
BisI GCNGC 2 cut(s) 402, 836
BlsI GCNGC 2 cut(s) 403, 837
Bme1390I CCNGG 1 cut(s) 1026
Bme18I GGWCC 2 cut(s) 716, 972
BmgT120I GGNCC 2 cut(s) 716, 972
BmiI GGNNCC 3 cut(s) 16, 637, 678
BmrFI CCNGG 1 cut(s) 1026
BmsI GCATC 2 cut(s) 333, 610
BplI GAGNNNNNCTC 2 cut(s) 716, 748
Bpu14I TTCGAA 1 cut(s) 164
BpuEI CTTGAG 1 cut(s) 970
BpuMI CCSGG 1 cut(s) 1026
BsaHI GRCGYC 1 cut(s) 752
BsaI GGTCTC 1 cut(s) 543
BsaJI CCNNGG 3 cut(s) 39, 906, 1013
Bse1I ACTGG 5 cut(s) 36, 385, 719, 863, 1108
Bse3DI GCAATG 1 cut(s) 875
BseDI CCNNGG 3 cut(s) 39, 906, 1013
BseGI GGATG 3 cut(s) 625, 992, 1073
BseMI GCAATG 1 cut(s) 875
BseMII CTCAG 1 cut(s) 1095
BseNI ACTGG 5 cut(s) 36, 385, 719, 863, 1108
BseSI GKGCMC 1 cut(s) 445
BseXI GCAGC 2 cut(s) 388, 822
BshFI GGCC 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 445, 936
BsiSI CCGG 2 cut(s) 812, 1025
BsmAI GTCTC 1 cut(s) 543
BsmI GAATGC 1 cut(s) 276
BsnI GGCC 1 cut(s) 829
Bso31I GGTCTC 1 cut(s) 543
Bsp119I TTCGAA 1 cut(s) 164
Bsp1286I GDGCHC 3 cut(s) 445, 662, 936
Bsp1407I TGTACA 1 cut(s) 533
Bsp143I GATC 3 cut(s) 189, 538, 676
Bsp19I CCATGG 1 cut(s) 39
BspACI CCGC 1 cut(s) 359
BspANI GGCC 1 cut(s) 829
BspCNI CTCAG 1 cut(s) 1094
BspLI GGNNCC 3 cut(s) 16, 637, 678
BspMI ACCTGC 1 cut(s) 1049
BspPI GGATC 2 cut(s) 671, 684
BspT104I TTCGAA 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 543
BsrDI GCAATG 1 cut(s) 875
BsrGI TGTACA 1 cut(s) 533
BsrI ACTGG 5 cut(s) 36, 385, 719, 863, 1108
BssECI CCNNGG 3 cut(s) 39, 906, 1013
BssMI GATC 3 cut(s) 189, 538, 676
BssNAI GTATAC 1 cut(s) 508
BssNI GRCGYC 1 cut(s) 752
BssT1I CCWWGG 2 cut(s) 39, 906
Bst1107I GTATAC 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 1017
BstACI GRCGYC 1 cut(s) 752
BstAUI TGTACA 1 cut(s) 533
BstBI TTCGAA 1 cut(s) 164
BstC8I GCNNGC 1 cut(s) 827
BstDEI CTNAG 1 cut(s) 1081
BstDSI CCRYGG 2 cut(s) 39, 1013
BstF5I GGATG 3 cut(s) 625, 992, 1073
BstKTI GATC 3 cut(s) 192, 541, 679
BstMAI GTCTC 1 cut(s) 543
BstMBI GATC 3 cut(s) 189, 538, 676
BstMWI GCNNNNNNNGC 4 cut(s) 239, 410, 835, 877
BstSCI CCNGG 1 cut(s) 1024
BstSLI GKGCMC 1 cut(s) 445
BstV1I GCAGC 2 cut(s) 388, 822
BstX2I RGATCY 2 cut(s) 538, 676
BstYI RGATCY 2 cut(s) 538, 676
BstZ17I GTATAC 1 cut(s) 508
BsuI GTATCC 2 cut(s) 46, 419
BsuRI GGCC 1 cut(s) 829
BtgI CCRYGG 2 cut(s) 39, 1013
BtsCI GGATG 3 cut(s) 625, 992, 1073
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 1049
Cac8I GCNNGC 1 cut(s) 827
CaiI CAGNNNCTG 1 cut(s) 1064
Cfr13I GGNCC 2 cut(s) 716, 972
Csp6I GTAC 4 cut(s) 202, 534, 841, 982
CviAII CATG 6 cut(s) 40, 87, 176, 475, 647, 673
CviJI RGCY 9 cut(s) 44, 455, 467, 660, 815, 829, 905, 959, 1001
CviKI_1 RGCY 9 cut(s) 44, 455, 467, 660, 815, 829, 905, 959, 1001
CviQI GTAC 4 cut(s) 202, 534, 841, 982
DdeI CTNAG 1 cut(s) 1081
DpnI GATC 3 cut(s) 191, 540, 678
DpnII GATC 3 cut(s) 189, 538, 676
DraI TTTAAA 2 cut(s) 450, 901
Eco130I CCWWGG 2 cut(s) 39, 906
Eco147I AGGCCT 1 cut(s) 829
Eco24I GRGCYC 1 cut(s) 662
Eco31I GGTCTC 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 716, 972
EcoT14I CCWWGG 2 cut(s) 39, 906
EcoT38I GRGCYC 1 cut(s) 662
ErhI CCWWGG 2 cut(s) 39, 906
FaeI CATG 6 cut(s) 43, 90, 179, 478, 650, 676
FatI CATG 6 cut(s) 39, 86, 175, 474, 646, 672
FblI GTMKAC 1 cut(s) 507
Fnu4HI GCNGC 2 cut(s) 402, 836
FokI GGATG 3 cut(s) 632, 979, 1080
FriOI GRGCYC 1 cut(s) 662
Fsp4HI GCNGC 2 cut(s) 402, 836
FspBI CTAG 6 cut(s) 21, 56, 581, 611, 632, 881
GluI GCNGC 2 cut(s) 402, 836
HaeIII GGCC 1 cut(s) 829
HapII CCGG 2 cut(s) 812, 1025
Hin1I GRCGYC 1 cut(s) 752
Hin1II CATG 6 cut(s) 43, 90, 179, 478, 650, 676
HinfI GANTC 9 cut(s) 52, 95, 348, 384, 628, 695, 765, 856, 948
HpaII CCGG 2 cut(s) 812, 1025
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 3 cut(s) 443, 508, 1038
Hpy188I TCNGA 7 cut(s) 253, 764, 796, 822, 947, 976, 1084
Hpy188III TCNNGA 3 cut(s) 128, 542, 748
Hpy8I GTNNAC 3 cut(s) 443, 508, 1038
Hpy99I CGWCG 1 cut(s) 754
HpyAV CCTTC 3 cut(s) 539, 962, 1026
HpyCH4III ACNGT 1 cut(s) 1017
HpyCH4IV ACGT 3 cut(s) 200, 237, 752
HpyCH4V TGCA 5 cut(s) 90, 296, 419, 443, 1058
HpyF10VI GCNNNNNNNGC 4 cut(s) 239, 410, 835, 877
HpyF3I CTNAG 1 cut(s) 1081
HpySE526I ACGT 3 cut(s) 200, 237, 752
Hsp92I GRCGYC 1 cut(s) 752
Hsp92II CATG 6 cut(s) 43, 90, 179, 478, 650, 676
Kzo9I GATC 3 cut(s) 189, 538, 676
LmnI GCTCC 1 cut(s) 939
Lsp1109I GCAGC 2 cut(s) 388, 822
LweI GCATC 2 cut(s) 333, 610
MaeI CTAG 6 cut(s) 21, 56, 581, 611, 632, 881
MaeII ACGT 3 cut(s) 200, 237, 752
MaeIII GTNAC 1 cut(s) 376
MalI GATC 3 cut(s) 191, 540, 678
MboI GATC 3 cut(s) 189, 538, 676
MboII GAAGA 1 cut(s) 240
MfeI CAATTG 1 cut(s) 573
MflI RGATCY 2 cut(s) 538, 676
MhlI GDGCHC 3 cut(s) 445, 662, 936
MluCI AATT 9 cut(s) 75, 140, 160, 255, 266, 489, 573, 735, 1086
MlyI GAGTC 1 cut(s) 46
MmeI TCCRAC 2 cut(s) 176, 694
MnlI CCTC 5 cut(s) 42, 126, 314, 718, 1022
MseI TTAA 4 cut(s) 363, 449, 900, 1100
MslI CAYNNNNRTG 2 cut(s) 44, 1001
MspA1I CMGCKG 1 cut(s) 959
MspI CCGG 2 cut(s) 812, 1025
MspR9I CCNGG 1 cut(s) 1026
MunI CAATTG 1 cut(s) 573
Mva1269I GAATGC 1 cut(s) 276
MwoI GCNNNNNNNGC 4 cut(s) 239, 410, 835, 877
NciI CCSGG 1 cut(s) 1026
NcoI CCATGG 1 cut(s) 39
NdeII GATC 3 cut(s) 189, 538, 676
NlaIII CATG 6 cut(s) 43, 90, 179, 478, 650, 676
NlaIV GGNNCC 3 cut(s) 16, 637, 678
NspV TTCGAA 1 cut(s) 164
PaqCI CACCTGC 1 cut(s) 1049
PceI AGGCCT 1 cut(s) 829
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 8 cut(s) 95, 348, 384, 628, 695, 765, 856, 948
PfoI TCCNGGA 1 cut(s) 1024
PkrI GCNGC 2 cut(s) 403, 837
PleI GAGTC 1 cut(s) 46
PpsI GAGTC 1 cut(s) 46
PspN4I GGNNCC 3 cut(s) 16, 637, 678
PspPI GGNCC 2 cut(s) 716, 972
PsrI GAACNNNNNNTAC 2 cut(s) 510, 542
PstNI CAGNNNCTG 1 cut(s) 1064
PsuI RGATCY 2 cut(s) 538, 676
PvuII CAGCTG 1 cut(s) 959
RsaI GTAC 4 cut(s) 203, 535, 842, 983
RsaNI GTAC 4 cut(s) 202, 534, 841, 982
RseI CAYNNNNRTG 2 cut(s) 44, 1001
SaqAI TTAA 4 cut(s) 363, 449, 900, 1100
SatI GCNGC 2 cut(s) 402, 836
Sau3AI GATC 3 cut(s) 189, 538, 676
Sau96I GGNCC 2 cut(s) 716, 972
SchI GAGTC 1 cut(s) 46
ScrFI CCNGG 1 cut(s) 1026
SduI GDGCHC 3 cut(s) 445, 662, 936
SfaNI GCATC 2 cut(s) 333, 610
SfuI TTCGAA 1 cut(s) 164
SinI GGWCC 2 cut(s) 716, 972
SmiMI CAYNNNNRTG 2 cut(s) 44, 1001
SmlI CTYRAG 1 cut(s) 985
SmoI CTYRAG 1 cut(s) 985
SpeI ACTAGT 1 cut(s) 20
Sse9I AATT 9 cut(s) 75, 140, 160, 255, 266, 489, 573, 735, 1086
SseBI AGGCCT 1 cut(s) 829
SsiI CCGC 1 cut(s) 359
SspI AATATT 1 cut(s) 894
SspMI CTAG 6 cut(s) 21, 56, 581, 611, 632, 881
StuI AGGCCT 1 cut(s) 829
StyD4I CCNGG 1 cut(s) 1024
StyI CCWWGG 2 cut(s) 39, 906
TaaI ACNGT 1 cut(s) 1017
TaiI ACGT 3 cut(s) 203, 240, 755
TaqI TCGA 3 cut(s) 127, 164, 749
TasI AATT 9 cut(s) 75, 140, 160, 255, 266, 489, 573, 735, 1086
TatI WGTACW 1 cut(s) 533
TfiI GAWTC 8 cut(s) 95, 348, 384, 628, 695, 765, 856, 948
Tru1I TTAA 4 cut(s) 363, 449, 900, 1100
Tru9I TTAA 4 cut(s) 363, 449, 900, 1100
TscAI CASTG 1 cut(s) 36
TseI GCWGC 2 cut(s) 401, 835
TspDTI ATGAA 6 cut(s) 153, 185, 192, 297, 340, 981
TspRI CASTG 1 cut(s) 36
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 2 cut(s) 716, 972
XapI RAATTY 4 cut(s) 160, 255, 266, 1086
XmiI GTMKAC 1 cut(s) 507
XspI CTAG 6 cut(s) 21, 56, 581, 611, 632, 881
ZraI GACGTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.