Rh5CG367900

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004761
Physical Location & Seq
Reverse (-)
45032676 .. 45040637
7962 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG367900.1

Sequence Viewer

Length: 1410 bp
ATGGCAATGGCATTTCTGGCTTCTCCTCCTCCTTGTTGTTGCGTTGGTTCAAGATTGGTGCAAATTCCACTCCCACTTGATCATCATAAACCACTAGTTTATCTCCCAACTCCAAAGCCTAGAAAATTTGCGAAATGCCTGTCGTCGCAGAAGAAACAATCCGCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCCACATTGAAGAGAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGAATCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTTGTAACAGGTCTGCTAGTGGCCCAAGTTAATGTAAATACTATGTCTCAACTCGGTTCTGGCAGTGTATCACTGGTATCCATGGCTATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTCGGAGGCATTTGCTACTTTGGAAGTCCGCGGTTCATTGGTGCGGTTAATGGGGTTCTGGTAATTGGAATCATCATATCCTTTGCTGCTCTTGTGGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTATTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCCGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCGACGTCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCCGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCGGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATGTCATTTTCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

469

Amino Acids

49.99

Weight (kDa)

7.47

Isoelectric Point (pI)

34.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 77 - 453 2.5e-72 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1052
Acc36I ACCTGC 2 cut(s) 304, 347
AccI GTMKAC 2 cut(s) 801, 886
AccII CGCG 3 cut(s) 640, 1046, 1312
AciI CCGC 7 cut(s) 162, 638, 640, 653, 1110, 1310, 1312
AclI AACGTT 1 cut(s) 1148
AclWI GGATC 2 cut(s) 965, 978
AcsI RAATTY 4 cut(s) 63, 125, 549, 559
AcuI CTGAAG 1 cut(s) 528
AcyI GRCGYC 1 cut(s) 1049
AfaI GTAC 3 cut(s) 497, 829, 1280
AfeI AGCGCT 1 cut(s) 244
AgsI TTSAA 6 cut(s) 51, 217, 479, 745, 839, 947
AhlI ACTAGT 1 cut(s) 94
AjnI CCWGG 1 cut(s) 1321
AleI CACNNNNGTG 1 cut(s) 1298
AluBI AGCT 3 cut(s) 761, 1256, 1298
AluI AGCT 3 cut(s) 761, 1256, 1298
Alw21I GWGCWC 1 cut(s) 739
Alw26I GTCTC 2 cut(s) 414, 837
Alw44I GTGCAC 1 cut(s) 735
AlwI GGATC 2 cut(s) 965, 978
Aor51HI AGCGCT 1 cut(s) 244
AoxI GGCC 3 cut(s) 324, 384, 1124
ApaLI GTGCAC 1 cut(s) 735
ApeKI GCWGC 4 cut(s) 695, 1001, 1132, 1256
ApoI RAATTY 4 cut(s) 63, 125, 549, 559
ArsI GACNNNNNNTTYG 2 cut(s) 125, 157
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 3 cut(s) 385, 1010, 1269
AvaII GGWCC 2 cut(s) 1010, 1269
BaeGI GKGCMC 1 cut(s) 739
BaeI ACNNNNGTAYC 2 cut(s) 1270, 1303
BamHI GGATCC 1 cut(s) 970
BanII GRGCYC 1 cut(s) 956
Bbv12I GWGCWC 1 cut(s) 739
BbvI GCAGC 4 cut(s) 682, 988, 1119, 1243
BccI CCATC 1 cut(s) 941
BceAI ACGGC 1 cut(s) 902
BciT130I CCWGG 1 cut(s) 1323
BciVI GTATCC 2 cut(s) 293, 451
BclI TGATCA 1 cut(s) 79
BcoDI GTCTC 2 cut(s) 414, 837
BcuI ACTAGT 1 cut(s) 94
BfaI CTAG 8 cut(s) 95, 120, 254, 380, 875, 905, 926, 1178
BfmI CTRYAG 2 cut(s) 297, 1014
BfoI RGCGCY 1 cut(s) 246
BfuAI ACCTGC 2 cut(s) 304, 347
BfuI GTATCC 2 cut(s) 293, 451
BglI GCCNNNNNGGC 1 cut(s) 170
BglII AGATCT 1 cut(s) 832
BisI GCNGC 5 cut(s) 696, 1002, 1133, 1257, 1310
BlsI GCNGC 5 cut(s) 697, 1003, 1134, 1258, 1311
Bme1390I CCNGG 1 cut(s) 1323
Bme18I GGWCC 2 cut(s) 1010, 1269
BmgT120I GGNCC 3 cut(s) 385, 1010, 1269
BmiI GGNNCC 3 cut(s) 931, 972, 1320
BmrFI CCNGG 1 cut(s) 1323
BplI GAGNNNNNCTC 4 cut(s) 1013, 1045, 1317, 1349
BpuEI CTTGAG 1 cut(s) 1267
BsaHI GRCGYC 1 cut(s) 1049
BsaI GGTCTC 1 cut(s) 837
BsaJI CCNNGG 5 cut(s) 270, 444, 638, 1203, 1310
BsaXI ACNNNNNCTCC 2 cut(s) 1218, 1248
Bse1I ACTGG 2 cut(s) 441, 1160
Bse3DI GCAATG 3 cut(s) 12, 1172, 1266
BseBI CCWGG 1 cut(s) 1323
BseDI CCNNGG 5 cut(s) 270, 444, 638, 1203, 1310
BseGI GGATG 1 cut(s) 1289
BseMI GCAATG 3 cut(s) 12, 1172, 1266
BseMII CTCAG 2 cut(s) 165, 1392
BseNI ACTGG 2 cut(s) 441, 1160
BseRI GAGGAG 2 cut(s) 15, 18
BseSI GKGCMC 1 cut(s) 739
BseXI GCAGC 4 cut(s) 682, 988, 1119, 1243
Bsh1236I CGCG 3 cut(s) 640, 1046, 1312
BshFI GGCC 3 cut(s) 326, 386, 1126
BsiHKAI GWGCWC 1 cut(s) 739
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 414, 837
BsmFI GGGAC 1 cut(s) 277
BsmI GAATGC 2 cut(s) 570, 919
BsnI GGCC 3 cut(s) 326, 386, 1126
Bso31I GGTCTC 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 739, 956
Bsp1407I TGTACA 1 cut(s) 827
Bsp143I GATC 4 cut(s) 79, 832, 970, 1093
Bsp19I CCATGG 1 cut(s) 444
Bsp68I TCGCGA 1 cut(s) 1046
BspACI CCGC 7 cut(s) 162, 638, 640, 653, 1110, 1310, 1312
BspANI GGCC 3 cut(s) 326, 386, 1126
BspCNI CTCAG 2 cut(s) 166, 1391
BspFNI CGCG 3 cut(s) 640, 1046, 1312
BspLI GGNNCC 3 cut(s) 931, 972, 1320
BspMAI CTGCAG 1 cut(s) 301
BspMI ACCTGC 2 cut(s) 304, 347
BspPI GGATC 2 cut(s) 965, 978
BspTNI GGTCTC 1 cut(s) 837
BsrDI GCAATG 3 cut(s) 12, 1172, 1266
BsrGI TGTACA 1 cut(s) 827
BsrI ACTGG 2 cut(s) 441, 1160
BssECI CCNNGG 5 cut(s) 270, 444, 638, 1203, 1310
BssMI GATC 4 cut(s) 79, 832, 970, 1093
BssNAI GTATAC 2 cut(s) 802, 887
BssNI GRCGYC 1 cut(s) 1049
BssT1I CCWWGG 2 cut(s) 444, 1203
Bst1107I GTATAC 2 cut(s) 802, 887
Bst2UI CCWGG 1 cut(s) 1323
Bst4CI ACNGT 2 cut(s) 271, 460
Bst6I CTCTTC 2 cut(s) 162, 212
BstACI GRCGYC 1 cut(s) 1049
BstAPI GCANNNNNTGC 1 cut(s) 296
BstAUI TGTACA 1 cut(s) 827
BstC8I GCNNGC 1 cut(s) 1124
BstDEI CTNAG 2 cut(s) 174, 1378
BstDSI CCRYGG 4 cut(s) 270, 444, 638, 1310
BstF5I GGATG 1 cut(s) 1289
BstFNI CGCG 3 cut(s) 640, 1046, 1312
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 4 cut(s) 82, 835, 973, 1096
BstMAI GTCTC 2 cut(s) 414, 837
BstMBI GATC 4 cut(s) 79, 832, 970, 1093
BstMWI GCNNNNNNNGC 7 cut(s) 17, 170, 296, 533, 704, 1132, 1174
BstNI CCWGG 1 cut(s) 1323
BstSCI CCNGG 1 cut(s) 1321
BstSFI CTRYAG 2 cut(s) 297, 1014
BstSLI GKGCMC 1 cut(s) 739
BstUI CGCG 3 cut(s) 640, 1046, 1312
BstV1I GCAGC 4 cut(s) 682, 988, 1119, 1243
BstX2I RGATCY 2 cut(s) 832, 970
BstXI CCANNNNNNTGG 1 cut(s) 314
BstYI RGATCY 2 cut(s) 832, 970
BstZ17I GTATAC 2 cut(s) 802, 887
BsuI GTATCC 2 cut(s) 293, 451
BsuRI GGCC 3 cut(s) 326, 386, 1126
BtgI CCRYGG 4 cut(s) 270, 444, 638, 1310
BtsCI GGATG 1 cut(s) 1289
BtsI GCAGTG 2 cut(s) 306, 433
BtsIMutI CAGTG 3 cut(s) 306, 433, 434
BtuMI TCGCGA 1 cut(s) 1046
BveI ACCTGC 2 cut(s) 304, 347
Cac8I GCNNGC 1 cut(s) 1124
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 3 cut(s) 385, 1010, 1269
Cfr42I CCGCGG 2 cut(s) 641, 1313
Csp6I GTAC 3 cut(s) 496, 828, 1279
CviAII CATG 4 cut(s) 361, 445, 769, 967
CviQI GTAC 3 cut(s) 496, 828, 1279
DdeI CTNAG 2 cut(s) 174, 1378
DpnI GATC 4 cut(s) 81, 834, 972, 1095
DpnII GATC 4 cut(s) 79, 832, 970, 1093
DraI TTTAAA 1 cut(s) 1198
Eam1104I CTCTTC 2 cut(s) 162, 212
EarI CTCTTC 2 cut(s) 162, 212
EciI GGCGGA 1 cut(s) 151
Eco130I CCWWGG 2 cut(s) 444, 1203
Eco147I AGGCCT 1 cut(s) 1126
Eco24I GRGCYC 1 cut(s) 956
Eco31I GGTCTC 1 cut(s) 837
Eco47I GGWCC 2 cut(s) 1010, 1269
Eco47III AGCGCT 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 528
EcoRII CCWGG 1 cut(s) 1321
EcoT14I CCWWGG 2 cut(s) 444, 1203
EcoT38I GRGCYC 1 cut(s) 956
ErhI CCWWGG 2 cut(s) 444, 1203
FaeI CATG 4 cut(s) 364, 448, 772, 970
FaqI GGGAC 1 cut(s) 277
FatI CATG 4 cut(s) 360, 444, 768, 966
FauI CCCGC 1 cut(s) 1117
FbaI TGATCA 1 cut(s) 79
FblI GTMKAC 2 cut(s) 801, 886
Fnu4HI GCNGC 5 cut(s) 696, 1002, 1133, 1257, 1310
FokI GGATG 1 cut(s) 1276
FriOI GRGCYC 1 cut(s) 956
Fsp4HI GCNGC 5 cut(s) 696, 1002, 1133, 1257, 1310
FspBI CTAG 8 cut(s) 95, 120, 254, 380, 875, 905, 926, 1178
GlaI GCGC 1 cut(s) 244
GluI GCNGC 5 cut(s) 696, 1002, 1133, 1257, 1310
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 3 cut(s) 326, 386, 1126
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 1 cut(s) 1049
Hin1II CATG 4 cut(s) 364, 448, 772, 970
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
HinfI GANTC 4 cut(s) 311, 678, 922, 1153
Hpy166II GTNNAC 3 cut(s) 737, 802, 887
Hpy188I TCNGA 7 cut(s) 547, 614, 1093, 1119, 1244, 1273, 1381
Hpy188III TCNNGA 5 cut(s) 51, 315, 836, 910, 1045
Hpy8I GTNNAC 3 cut(s) 737, 802, 887
Hpy99I CGWCG 2 cut(s) 148, 1051
HpyAV CCTTC 2 cut(s) 833, 1323
HpyCH4III ACNGT 2 cut(s) 271, 460
HpyCH4IV ACGT 3 cut(s) 494, 1049, 1148
HpyF10VI GCNNNNNNNGC 7 cut(s) 17, 170, 296, 533, 704, 1132, 1174
HpyF3I CTNAG 2 cut(s) 174, 1378
HpySE526I ACGT 3 cut(s) 494, 1049, 1148
Hsp92I GRCGYC 1 cut(s) 1049
Hsp92II CATG 4 cut(s) 364, 448, 772, 970
HspAI GCGC 1 cut(s) 243
Ksp22I TGATCA 1 cut(s) 79
KspI CCGCGG 2 cut(s) 641, 1313
Kzo9I GATC 4 cut(s) 79, 832, 970, 1093
Lsp1109I GCAGC 4 cut(s) 682, 988, 1119, 1243
MaeI CTAG 8 cut(s) 95, 120, 254, 380, 875, 905, 926, 1178
MaeII ACGT 3 cut(s) 494, 1049, 1148
MaeIII GTNAC 2 cut(s) 301, 367
MalI GATC 4 cut(s) 81, 834, 972, 1095
MboI GATC 4 cut(s) 79, 832, 970, 1093
MboII GAAGA 4 cut(s) 163, 179, 229, 534
MfeI CAATTG 1 cut(s) 728
MflI RGATCY 2 cut(s) 832, 970
MhlI GDGCHC 2 cut(s) 739, 956
MmeI TCCRAC 4 cut(s) 159, 219, 470, 988
MseI TTAA 4 cut(s) 393, 657, 1145, 1197
MslI CAYNNNNRTG 2 cut(s) 449, 1298
MspA1I CMGCKG 5 cut(s) 640, 1112, 1256, 1298, 1312
MspR9I CCNGG 1 cut(s) 1323
MunI CAATTG 1 cut(s) 728
Mva1269I GAATGC 2 cut(s) 570, 919
MvaI CCWGG 1 cut(s) 1323
MvnI CGCG 3 cut(s) 640, 1046, 1312
MwoI GCNNNNNNNGC 7 cut(s) 17, 170, 296, 533, 704, 1132, 1174
NcoI CCATGG 1 cut(s) 444
NdeII GATC 4 cut(s) 79, 832, 970, 1093
NlaIII CATG 4 cut(s) 364, 448, 772, 970
NlaIV GGNNCC 3 cut(s) 931, 972, 1320
NmuCI GTSAC 1 cut(s) 301
NruI TCGCGA 1 cut(s) 1046
OliI CACNNNNGTG 1 cut(s) 1298
PceI AGGCCT 1 cut(s) 1126
PctI GAATGC 2 cut(s) 570, 919
PfeI GAWTC 4 cut(s) 311, 678, 922, 1153
PfoI TCCNGGA 1 cut(s) 1321
PkrI GCNGC 5 cut(s) 697, 1003, 1134, 1258, 1311
Psp1406I AACGTT 1 cut(s) 1148
Psp6I CCWGG 1 cut(s) 1321
PspGI CCWGG 1 cut(s) 1321
PspN4I GGNNCC 3 cut(s) 931, 972, 1320
PspPI GGNCC 3 cut(s) 385, 1010, 1269
PstI CTGCAG 1 cut(s) 301
PsuI RGATCY 2 cut(s) 832, 970
PvuII CAGCTG 2 cut(s) 1256, 1298
RruI TCGCGA 1 cut(s) 1046
RsaI GTAC 3 cut(s) 497, 829, 1280
RsaNI GTAC 3 cut(s) 496, 828, 1279
RseI CAYNNNNRTG 2 cut(s) 449, 1298
SacII CCGCGG 2 cut(s) 641, 1313
SaqAI TTAA 4 cut(s) 393, 657, 1145, 1197
SatI GCNGC 5 cut(s) 696, 1002, 1133, 1257, 1310
Sau3AI GATC 4 cut(s) 79, 832, 970, 1093
Sau96I GGNCC 3 cut(s) 385, 1010, 1269
ScrFI CCNGG 1 cut(s) 1323
SduI GDGCHC 2 cut(s) 739, 956
SfcI CTRYAG 2 cut(s) 297, 1014
Sfr303I CCGCGG 2 cut(s) 641, 1313
SgrBI CCGCGG 2 cut(s) 641, 1313
SinI GGWCC 2 cut(s) 1010, 1269
SmiMI CAYNNNNRTG 2 cut(s) 449, 1298
SmlI CTYRAG 1 cut(s) 1282
SmoI CTYRAG 1 cut(s) 1282
SpeI ACTAGT 1 cut(s) 94
SseBI AGGCCT 1 cut(s) 1126
SsiI CCGC 7 cut(s) 162, 638, 640, 653, 1110, 1310, 1312
SspMI CTAG 8 cut(s) 95, 120, 254, 380, 875, 905, 926, 1178
StuI AGGCCT 1 cut(s) 1126
StyD4I CCNGG 1 cut(s) 1321
StyI CCWWGG 2 cut(s) 444, 1203
TaaI ACNGT 2 cut(s) 271, 460
TaiI ACGT 3 cut(s) 497, 1052, 1151
TaqI TCGA 1 cut(s) 866
TatI WGTACW 1 cut(s) 827
TauI GCSGC 1 cut(s) 1312
TfiI GAWTC 4 cut(s) 311, 678, 922, 1153
Tru1I TTAA 4 cut(s) 393, 657, 1145, 1197
Tru9I TTAA 4 cut(s) 393, 657, 1145, 1197
TscAI CASTG 3 cut(s) 306, 433, 441
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 4 cut(s) 695, 1001, 1132, 1256
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 3 cut(s) 591, 634, 1278
TspRI CASTG 3 cut(s) 306, 433, 441
VneI GTGCAC 1 cut(s) 735
VpaK11BI GGWCC 2 cut(s) 1010, 1269
XapI RAATTY 4 cut(s) 63, 125, 549, 559
XmiI GTMKAC 2 cut(s) 801, 886
XspI CTAG 8 cut(s) 95, 120, 254, 380, 875, 905, 926, 1178
ZraI GACGTC 1 cut(s) 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.