Rh5BG341300

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004761
Physical Location & Seq
Reverse (-)
48417607 .. 48421371
3765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG341300.1

Sequence Viewer

Length: 642 bp
ATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCTGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCAACGTCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCAGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATATCATTTCCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

213

Amino Acids

22.64

Weight (kDa)

4.48

Isoelectric Point (pI)

33.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 1 - 197 2.7e-41 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 33, 118
AciI CCGC 1 cut(s) 542
AclI AACGTT 1 cut(s) 380
AclWI GGATC 2 cut(s) 197, 210
AfaI GTAC 2 cut(s) 61, 512
AgsI TTSAA 2 cut(s) 71, 179
AjnI CCWGG 1 cut(s) 553
AleI CACNNNNGTG 1 cut(s) 530
AluBI AGCT 2 cut(s) 488, 530
AluI AGCT 2 cut(s) 488, 530
Alw26I GTCTC 1 cut(s) 69
AlwI GGATC 2 cut(s) 197, 210
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 3 cut(s) 233, 364, 488
AspS9I GGNCC 2 cut(s) 242, 501
AsuC2I CCSGG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 242, 501
BaeI ACNNNNGTAYC 2 cut(s) 502, 535
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 188
BbvI GCAGC 3 cut(s) 220, 351, 475
BccI CCATC 1 cut(s) 173
BciT130I CCWGG 1 cut(s) 555
BcnI CCSGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 69
BfaI CTAG 4 cut(s) 107, 137, 158, 410
BfmI CTRYAG 1 cut(s) 246
BglII AGATCT 1 cut(s) 64
BisI GCNGC 4 cut(s) 234, 365, 489, 542
BlsI GCNGC 4 cut(s) 235, 366, 490, 543
Bme1390I CCNGG 2 cut(s) 341, 555
Bme18I GGWCC 2 cut(s) 242, 501
BmgT120I GGNCC 2 cut(s) 242, 501
BmiI GGNNCC 3 cut(s) 163, 204, 552
BmrFI CCNGG 2 cut(s) 341, 555
BplI GAGNNNNNCTC 4 cut(s) 245, 277, 549, 581
BpuEI CTTGAG 1 cut(s) 499
BpuMI CCSGG 1 cut(s) 341
BsaI GGTCTC 1 cut(s) 69
BsaJI CCNNGG 1 cut(s) 435
BsaXI ACNNNNNCTCC 2 cut(s) 450, 480
Bse1I ACTGG 1 cut(s) 392
Bse3DI GCAATG 2 cut(s) 404, 498
BseBI CCWGG 1 cut(s) 555
BseDI CCNNGG 1 cut(s) 435
BseGI GGATG 1 cut(s) 521
BseMI GCAATG 2 cut(s) 404, 498
BseMII CTCAG 1 cut(s) 624
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 220, 351, 475
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 341
BsmAI GTCTC 1 cut(s) 69
BsmI GAATGC 1 cut(s) 151
BsnI GGCC 1 cut(s) 358
Bso31I GGTCTC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 188
Bsp1407I TGTACA 1 cut(s) 59
Bsp143I GATC 3 cut(s) 64, 202, 325
BspACI CCGC 1 cut(s) 542
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 623
BspLI GGNNCC 3 cut(s) 163, 204, 552
BspPI GGATC 2 cut(s) 197, 210
BspTNI GGTCTC 1 cut(s) 69
BsrDI GCAATG 2 cut(s) 404, 498
BsrGI TGTACA 1 cut(s) 59
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 435
BssMI GATC 3 cut(s) 64, 202, 325
BssNAI GTATAC 2 cut(s) 34, 119
BssT1I CCWWGG 1 cut(s) 435
Bst1107I GTATAC 2 cut(s) 34, 119
Bst2UI CCWGG 1 cut(s) 555
BstAUI TGTACA 1 cut(s) 59
BstC8I GCNNGC 1 cut(s) 356
BstDEI CTNAG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 521
BstKTI GATC 3 cut(s) 67, 205, 328
BstMAI GTCTC 1 cut(s) 69
BstMBI GATC 3 cut(s) 64, 202, 325
BstMWI GCNNNNNNNGC 2 cut(s) 364, 406
BstNI CCWGG 1 cut(s) 555
BstSCI CCNGG 2 cut(s) 339, 553
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 220, 351, 475
BstX2I RGATCY 2 cut(s) 64, 202
BstYI RGATCY 2 cut(s) 64, 202
BstZ17I GTATAC 2 cut(s) 34, 119
BsuRI GGCC 1 cut(s) 358
BtsCI GGATG 1 cut(s) 521
Cac8I GCNNGC 1 cut(s) 356
Cfr13I GGNCC 2 cut(s) 242, 501
Csp6I GTAC 2 cut(s) 60, 511
CviAII CATG 1 cut(s) 199
CviJI RGCY 7 cut(s) 186, 344, 358, 434, 488, 530, 565
CviKI_1 RGCY 7 cut(s) 186, 344, 358, 434, 488, 530, 565
CviQI GTAC 2 cut(s) 60, 511
DdeI CTNAG 1 cut(s) 610
DpnI GATC 3 cut(s) 66, 204, 327
DpnII GATC 3 cut(s) 64, 202, 325
DraI TTTAAA 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 435
Eco147I AGGCCT 1 cut(s) 358
Eco24I GRGCYC 1 cut(s) 188
Eco31I GGTCTC 1 cut(s) 69
Eco47I GGWCC 2 cut(s) 242, 501
EcoRII CCWGG 1 cut(s) 553
EcoT14I CCWWGG 1 cut(s) 435
EcoT38I GRGCYC 1 cut(s) 188
ErhI CCWWGG 1 cut(s) 435
FaeI CATG 1 cut(s) 202
FatI CATG 1 cut(s) 198
FblI GTMKAC 2 cut(s) 33, 118
Fnu4HI GCNGC 4 cut(s) 234, 365, 489, 542
FokI GGATG 1 cut(s) 508
FriOI GRGCYC 1 cut(s) 188
Fsp4HI GCNGC 4 cut(s) 234, 365, 489, 542
FspBI CTAG 4 cut(s) 107, 137, 158, 410
GluI GCNGC 4 cut(s) 234, 365, 489, 542
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 341
Hin1II CATG 1 cut(s) 202
HinfI GANTC 2 cut(s) 154, 385
HpaII CCGG 1 cut(s) 341
Hpy166II GTNNAC 2 cut(s) 34, 119
Hpy188I TCNGA 5 cut(s) 325, 351, 476, 505, 613
Hpy188III TCNNGA 2 cut(s) 68, 142
Hpy8I GTNNAC 2 cut(s) 34, 119
HpyAV CCTTC 2 cut(s) 65, 555
HpyCH4IV ACGT 2 cut(s) 281, 380
HpyCH4V TGCA 2 cut(s) 220, 491
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 406
HpyF3I CTNAG 1 cut(s) 610
HpySE526I ACGT 2 cut(s) 281, 380
Hsp92II CATG 1 cut(s) 202
Kzo9I GATC 3 cut(s) 64, 202, 325
Lsp1109I GCAGC 3 cut(s) 220, 351, 475
MaeI CTAG 4 cut(s) 107, 137, 158, 410
MaeII ACGT 2 cut(s) 281, 380
MalI GATC 3 cut(s) 66, 204, 327
MboI GATC 3 cut(s) 64, 202, 325
MflI RGATCY 2 cut(s) 64, 202
MhlI GDGCHC 1 cut(s) 188
MluCI AATT 4 cut(s) 15, 264, 536, 615
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 4 cut(s) 247, 551, 581, 619
MseI TTAA 2 cut(s) 377, 429
MslI CAYNNNNRTG 1 cut(s) 530
MspA1I CMGCKG 2 cut(s) 488, 530
MspI CCGG 1 cut(s) 341
MspR9I CCNGG 2 cut(s) 341, 555
Mva1269I GAATGC 1 cut(s) 151
MvaI CCWGG 1 cut(s) 555
MwoI GCNNNNNNNGC 2 cut(s) 364, 406
NciI CCSGG 1 cut(s) 341
NdeII GATC 3 cut(s) 64, 202, 325
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 3 cut(s) 163, 204, 552
OliI CACNNNNGTG 1 cut(s) 530
PceI AGGCCT 1 cut(s) 358
PctI GAATGC 1 cut(s) 151
PfeI GAWTC 2 cut(s) 154, 385
PfoI TCCNGGA 1 cut(s) 553
PkrI GCNGC 4 cut(s) 235, 366, 490, 543
Psp1406I AACGTT 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 553
PspGI CCWGG 1 cut(s) 553
PspN4I GGNNCC 3 cut(s) 163, 204, 552
PspPI GGNCC 2 cut(s) 242, 501
PsrI GAACNNNNNNTAC 2 cut(s) 36, 68
PsuI RGATCY 2 cut(s) 64, 202
PvuII CAGCTG 2 cut(s) 488, 530
RsaI GTAC 2 cut(s) 61, 512
RsaNI GTAC 2 cut(s) 60, 511
RseI CAYNNNNRTG 1 cut(s) 530
SaqAI TTAA 2 cut(s) 377, 429
SatI GCNGC 4 cut(s) 234, 365, 489, 542
Sau3AI GATC 3 cut(s) 64, 202, 325
Sau96I GGNCC 2 cut(s) 242, 501
ScrFI CCNGG 2 cut(s) 341, 555
SduI GDGCHC 1 cut(s) 188
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 2 cut(s) 242, 501
SmiMI CAYNNNNRTG 1 cut(s) 530
SmlI CTYRAG 1 cut(s) 514
SmoI CTYRAG 1 cut(s) 514
Sse9I AATT 4 cut(s) 15, 264, 536, 615
SseBI AGGCCT 1 cut(s) 358
SsiI CCGC 1 cut(s) 542
SspMI CTAG 4 cut(s) 107, 137, 158, 410
StuI AGGCCT 1 cut(s) 358
StyD4I CCNGG 2 cut(s) 339, 553
StyI CCWWGG 1 cut(s) 435
TaiI ACGT 2 cut(s) 284, 383
TaqI TCGA 1 cut(s) 98
TasI AATT 4 cut(s) 15, 264, 536, 615
TatI WGTACW 1 cut(s) 59
TauI GCSGC 1 cut(s) 544
TfiI GAWTC 2 cut(s) 154, 385
Tru1I TTAA 2 cut(s) 377, 429
Tru9I TTAA 2 cut(s) 377, 429
TseI GCWGC 3 cut(s) 233, 364, 488
TspDTI ATGAA 1 cut(s) 510
VpaK11BI GGWCC 2 cut(s) 242, 501
XmiI GTMKAC 2 cut(s) 33, 118
XspI CTAG 4 cut(s) 107, 137, 158, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.