Rh5BG341400

Ubiquitin-associated translation elongation factor EF1B protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0004761
Physical Location & Seq
Reverse (-)
48424188 .. 48426666
2479 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG341400.1

Sequence Viewer

Length: 597 bp
ATGGCATTTCTGGCTCCTCCTCCTCCTTGTTGTTGCGTTGGTTCTTCAAGATTGGTGCAAAAGCAAATTCACGCTCTTCCACTCGCACTCCCACTCCAACTTGATCATAAACCACTTTATCTCCCAACTCCAAAACCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCCACATTGAAGAGAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGAATCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTTGTAACAGGTCTGCTAGTAGCCGAAGTTAATGTGAATACTATGTCTCAACTCGGTTCTGGCAGTGTATCACTGGTATCCATGGCTATGAGGACTGTTGGTAAAGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.3

Weight (kDa)

8.96

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 81 - 193 3.2e-25 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 316, 359
AcsI RAATTY 4 cut(s) 66, 143, 561, 571
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 1 cut(s) 509
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 3 cut(s) 48, 229, 491
Alw26I GTCTC 1 cut(s) 426
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 336
ApoI RAATTY 4 cut(s) 66, 143, 561, 571
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 1 cut(s) 257
BciVI GTATCC 2 cut(s) 305, 463
BclI TGATCA 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 426
BfaI CTAG 2 cut(s) 266, 392
BfmI CTRYAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 316, 359
BfuI GTATCC 2 cut(s) 305, 463
BmiI GGNNCC 1 cut(s) 15
BsaJI CCNNGG 2 cut(s) 282, 456
BsaXI ACNNNNNCTCC 6 cut(s) 72, 78, 102, 105, 108, 135
Bse1I ACTGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 282, 456
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 453
BseRI GAGGAG 3 cut(s) 6, 9, 12
BshFI GGCC 1 cut(s) 338
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 426
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 582
BsnI GGCC 1 cut(s) 338
Bsp143I GATC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 456
BspANI GGCC 1 cut(s) 338
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 1 cut(s) 15
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 2 cut(s) 316, 359
BspQI GCTCTTC 1 cut(s) 81
BsrI ACTGG 1 cut(s) 453
BssECI CCNNGG 2 cut(s) 282, 456
BssMI GATC 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 456
Bst4CI ACNGT 2 cut(s) 283, 472
Bst6I CTCTTC 3 cut(s) 81, 174, 224
BstAPI GCANNNNNTGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 186
BstDSI CCRYGG 2 cut(s) 282, 456
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 1 cut(s) 106
BstMAI GTCTC 1 cut(s) 426
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 3 cut(s) 11, 308, 545
BstSFI CTRYAG 1 cut(s) 309
BstXI CCANNNNNNTGG 1 cut(s) 326
BsuI GTATCC 2 cut(s) 305, 463
BsuRI GGCC 1 cut(s) 338
BtgI CCRYGG 2 cut(s) 282, 456
BtsI GCAGTG 2 cut(s) 318, 445
BtsIMutI CAGTG 3 cut(s) 318, 445, 446
BveI ACCTGC 2 cut(s) 316, 359
CfoI GCGC 1 cut(s) 257
Csp6I GTAC 1 cut(s) 508
CviAII CATG 2 cut(s) 373, 457
CviJI RGCY 7 cut(s) 14, 185, 199, 221, 338, 398, 461
CviKI_1 RGCY 7 cut(s) 14, 185, 199, 221, 338, 398, 461
CviQI GTAC 1 cut(s) 508
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
Eam1104I CTCTTC 3 cut(s) 81, 174, 224
EarI CTCTTC 3 cut(s) 81, 174, 224
Eco130I CCWWGG 1 cut(s) 456
Eco47III AGCGCT 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 540
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 2 cut(s) 376, 460
FaiI YATR 8 cut(s) 108, 370, 374, 419, 458, 464, 518, 543
FaqI GGGAC 1 cut(s) 289
FatI CATG 2 cut(s) 372, 456
FbaI TGATCA 1 cut(s) 103
FspBI CTAG 2 cut(s) 266, 392
GlaI GCGC 1 cut(s) 256
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 338
HhaI GCGC 1 cut(s) 257
Hin1II CATG 2 cut(s) 376, 460
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 178, 559
Hpy188III TCNNGA 2 cut(s) 48, 327
HpyCH4III ACNGT 2 cut(s) 283, 472
HpyCH4IV ACGT 1 cut(s) 506
HpyCH4V TGCA 5 cut(s) 58, 272, 311, 344, 354
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 308, 545
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 1 cut(s) 506
Hsp92II CATG 2 cut(s) 376, 460
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 103
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 19
MaeI CTAG 2 cut(s) 266, 392
MaeII ACGT 1 cut(s) 506
MaeIII GTNAC 2 cut(s) 313, 379
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 6 cut(s) 36, 68, 178, 191, 241, 546
MluCI AATT 5 cut(s) 66, 143, 492, 561, 571
MmeI TCCRAC 4 cut(s) 121, 171, 231, 482
MnlI CCTC 8 cut(s) 27, 30, 33, 175, 221, 308, 349, 459
MseI TTAA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 461
Mva1269I GAATGC 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 11, 308, 545
NcoI CCATGG 1 cut(s) 456
NdeII GATC 1 cut(s) 103
NlaIII CATG 2 cut(s) 376, 460
NlaIV GGNNCC 1 cut(s) 15
NmuCI GTSAC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 1 cut(s) 582
PfeI GAWTC 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 15
PstI CTGCAG 1 cut(s) 313
RsaI GTAC 1 cut(s) 509
RsaNI GTAC 1 cut(s) 508
RseI CAYNNNNRTG 1 cut(s) 461
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 1 cut(s) 405
Sau3AI GATC 1 cut(s) 103
SetI ASST 5 cut(s) 213, 310, 353, 388, 509
SfcI CTRYAG 1 cut(s) 309
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 5 cut(s) 66, 143, 492, 561, 571
SspMI CTAG 2 cut(s) 266, 392
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 283, 472
TaiI ACGT 1 cut(s) 509
TasI AATT 5 cut(s) 66, 143, 492, 561, 571
TfiI GAWTC 1 cut(s) 323
Tru1I TTAA 1 cut(s) 405
Tru9I TTAA 1 cut(s) 405
TscAI CASTG 3 cut(s) 318, 445, 453
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspRI CASTG 3 cut(s) 318, 445, 453
XapI RAATTY 4 cut(s) 66, 143, 561, 571
XspI CTAG 2 cut(s) 266, 392
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.