RLG00000034687

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004761
Physical Location & Seq
Reverse (-)
48527900 .. 48543285
15386 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034687

Sequence Viewer

Length: 1353 bp
ATGGCATTTCTGGCTTCTCTTCCTCCTCCTTGTTGTTGCGTTGGTTCAAGATTGGTGCAAAAGCAAATTCACGCTCTTCCACTCCTACTCCCACTCCCACTCCCACTTGATCATAAACCACTTTATCTCCCAAGTCCAAATCCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCGACATTGAAGAGAGAACCCCCAAGTCTACCCAGCGCTGTTTTCCTAGTTGCAGGGACTACGGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGAATCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTATCCATGGCTATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTCGGAGGCATTTGCTACTTTGGAAGTCCGCGGTTCATTGGTGCGGTTAATGGGGTTCTGGTAATTGGAATCATCATGTCTTTTGCTGCTCTTGTGGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCAATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCTGTGATTCTAGGAACCATCACAAATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTACTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCGACGTCATATATTGGATTTGTTTTGGGTCTCTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTTGGATTTGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCAGTTGGTCCCAGGAGGAAGGCTTACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATGTCATTTTCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

451

Amino Acids

48.3

Weight (kDa)

7.47

Isoelectric Point (pI)

40.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 84 - 130 3.3e-08 Tryptophan/tyrosine permease family
Trp_Tyr_perm PF03222 127 - 435 6.5e-53 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 995
Acc36I ACCTGC 2 cut(s) 322, 365
AccI GTMKAC 3 cut(s) 253, 744, 829
AccII CGCG 2 cut(s) 583, 989
AciI CCGC 4 cut(s) 581, 583, 596, 1253
AclI AACGTT 1 cut(s) 1091
AclWI GGATC 2 cut(s) 908, 921
AcsI RAATTY 4 cut(s) 66, 149, 492, 502
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 992
AfaI GTAC 3 cut(s) 440, 772, 1223
AfeI AGCGCT 1 cut(s) 262
AgsI TTSAA 7 cut(s) 48, 235, 422, 688, 782, 810, 890
AjnI CCWGG 1 cut(s) 1264
AleI CACNNNNGTG 1 cut(s) 1241
AluBI AGCT 3 cut(s) 704, 1199, 1241
AluI AGCT 3 cut(s) 704, 1199, 1241
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 2 cut(s) 780, 1022
Alw44I GTGCAC 1 cut(s) 678
AlwI GGATC 2 cut(s) 908, 921
Aor51HI AGCGCT 1 cut(s) 262
AoxI GGCC 2 cut(s) 342, 1067
ApaLI GTGCAC 1 cut(s) 678
ApeKI GCWGC 3 cut(s) 638, 1075, 1199
ApoI RAATTY 4 cut(s) 66, 149, 492, 502
ArsI GACNNNNNNTTYG 2 cut(s) 149, 181
AspLEI GCGC 1 cut(s) 263
AspS9I GGNCC 3 cut(s) 953, 1212, 1261
AsuC2I CCSGG 1 cut(s) 1052
AvaII GGWCC 3 cut(s) 953, 1212, 1261
BaeGI GKGCMC 1 cut(s) 682
BaeI ACNNNNGTAYC 2 cut(s) 1213, 1246
BamHI GGATCC 1 cut(s) 913
BanII GRGCYC 1 cut(s) 899
Bbv12I GWGCWC 1 cut(s) 682
BbvI GCAGC 3 cut(s) 625, 1062, 1186
BccI CCATC 1 cut(s) 884
BciT130I CCWGG 1 cut(s) 1266
BciVI GTATCC 2 cut(s) 311, 394
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 1052
BcoDI GTCTC 2 cut(s) 780, 1022
BfaI CTAG 5 cut(s) 272, 818, 848, 869, 1121
BfmI CTRYAG 2 cut(s) 315, 957
BfoI RGCGCY 1 cut(s) 264
BfuAI ACCTGC 2 cut(s) 322, 365
BfuI GTATCC 2 cut(s) 311, 394
BglII AGATCT 1 cut(s) 775
BisI GCNGC 4 cut(s) 639, 1076, 1200, 1253
BlsI GCNGC 4 cut(s) 640, 1077, 1201, 1254
Bme1390I CCNGG 2 cut(s) 1052, 1266
Bme18I GGWCC 3 cut(s) 953, 1212, 1261
BmgT120I GGNCC 3 cut(s) 953, 1212, 1261
BmiI GGNNCC 3 cut(s) 874, 915, 1263
BmrFI CCNGG 2 cut(s) 1052, 1266
BplI GAGNNNNNCTC 2 cut(s) 956, 988
BpuEI CTTGAG 1 cut(s) 1210
BpuMI CCSGG 1 cut(s) 1052
BsaHI GRCGYC 1 cut(s) 992
BsaI GGTCTC 2 cut(s) 780, 1022
BsaJI CCNNGG 4 cut(s) 387, 581, 1146, 1264
Bse1I ACTGG 1 cut(s) 1103
Bse3DI GCAATG 2 cut(s) 1115, 1209
BseBI CCWGG 1 cut(s) 1266
BseDI CCNNGG 4 cut(s) 387, 581, 1146, 1264
BseGI GGATG 1 cut(s) 1232
BseMI GCAATG 2 cut(s) 1115, 1209
BseMII CTCAG 2 cut(s) 183, 1335
BseNI ACTGG 1 cut(s) 1103
BseRI GAGGAG 1 cut(s) 15
BseSI GKGCMC 1 cut(s) 682
BseXI GCAGC 3 cut(s) 625, 1062, 1186
BseYI CCCAGC 1 cut(s) 257
Bsh1236I CGCG 2 cut(s) 583, 989
BshFI GGCC 2 cut(s) 344, 1069
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 1 cut(s) 1052
BslFI GGGAC 2 cut(s) 295, 1247
BsmAI GTCTC 2 cut(s) 780, 1022
BsmFI GGGAC 2 cut(s) 295, 1247
BsmI GAATGC 2 cut(s) 513, 862
BsnI GGCC 2 cut(s) 344, 1069
Bso31I GGTCTC 2 cut(s) 780, 1022
Bsp1286I GDGCHC 2 cut(s) 682, 899
Bsp1407I TGTACA 1 cut(s) 770
Bsp143I GATC 4 cut(s) 109, 775, 913, 1036
Bsp19I CCATGG 1 cut(s) 387
Bsp68I TCGCGA 1 cut(s) 989
BspACI CCGC 4 cut(s) 581, 583, 596, 1253
BspANI GGCC 2 cut(s) 344, 1069
BspCNI CTCAG 2 cut(s) 184, 1334
BspFNI CGCG 2 cut(s) 583, 989
BspLI GGNNCC 3 cut(s) 874, 915, 1263
BspMAI CTGCAG 1 cut(s) 319
BspMI ACCTGC 2 cut(s) 322, 365
BspPI GGATC 2 cut(s) 908, 921
BspQI GCTCTTC 1 cut(s) 81
BspTNI GGTCTC 2 cut(s) 780, 1022
BsrDI GCAATG 2 cut(s) 1115, 1209
BsrGI TGTACA 1 cut(s) 770
BsrI ACTGG 1 cut(s) 1103
BssECI CCNNGG 4 cut(s) 387, 581, 1146, 1264
BssMI GATC 4 cut(s) 109, 775, 913, 1036
BssNAI GTATAC 2 cut(s) 745, 830
BssNI GRCGYC 1 cut(s) 992
BssT1I CCWWGG 2 cut(s) 387, 1146
Bst1107I GTATAC 2 cut(s) 745, 830
Bst2UI CCWGG 1 cut(s) 1266
Bst4CI ACNGT 3 cut(s) 289, 403, 949
Bst6I CTCTTC 4 cut(s) 24, 81, 180, 230
BstACI GRCGYC 1 cut(s) 992
BstAPI GCANNNNNTGC 1 cut(s) 314
BstAUI TGTACA 1 cut(s) 770
BstC8I GCNNGC 1 cut(s) 1067
BstDEI CTNAG 2 cut(s) 192, 1321
BstDSI CCRYGG 2 cut(s) 387, 581
BstF5I GGATG 1 cut(s) 1232
BstFNI CGCG 2 cut(s) 583, 989
BstH2I RGCGCY 1 cut(s) 264
BstHHI GCGC 1 cut(s) 263
BstKTI GATC 4 cut(s) 112, 778, 916, 1039
BstMAI GTCTC 2 cut(s) 780, 1022
BstMBI GATC 4 cut(s) 109, 775, 913, 1036
BstMWI GCNNNNNNNGC 6 cut(s) 11, 314, 476, 647, 1075, 1117
BstNI CCWGG 1 cut(s) 1266
BstSCI CCNGG 2 cut(s) 1050, 1264
BstSFI CTRYAG 2 cut(s) 315, 957
BstSLI GKGCMC 1 cut(s) 682
BstUI CGCG 2 cut(s) 583, 989
BstV1I GCAGC 3 cut(s) 625, 1062, 1186
BstX2I RGATCY 2 cut(s) 775, 913
BstXI CCANNNNNNTGG 1 cut(s) 332
BstYI RGATCY 2 cut(s) 775, 913
BstZ17I GTATAC 2 cut(s) 745, 830
BsuI GTATCC 2 cut(s) 311, 394
BsuRI GGCC 2 cut(s) 344, 1069
BtgI CCRYGG 2 cut(s) 387, 581
BtsCI GGATG 1 cut(s) 1232
BtsI GCAGTG 1 cut(s) 324
BtsIMutI CAGTG 1 cut(s) 324
BtuMI TCGCGA 1 cut(s) 989
BveI ACCTGC 2 cut(s) 322, 365
Cac8I GCNNGC 1 cut(s) 1067
CfoI GCGC 1 cut(s) 263
Cfr13I GGNCC 3 cut(s) 953, 1212, 1261
Cfr42I CCGCGG 1 cut(s) 584
Csp6I GTAC 3 cut(s) 439, 771, 1222
CviAII CATG 5 cut(s) 379, 388, 628, 712, 910
CviQI GTAC 3 cut(s) 439, 771, 1222
DdeI CTNAG 2 cut(s) 192, 1321
DpnI GATC 4 cut(s) 111, 777, 915, 1038
DpnII GATC 4 cut(s) 109, 775, 913, 1036
DraI TTTAAA 1 cut(s) 1141
Eam1104I CTCTTC 4 cut(s) 24, 81, 180, 230
EarI CTCTTC 4 cut(s) 24, 81, 180, 230
Eco130I CCWWGG 2 cut(s) 387, 1146
Eco147I AGGCCT 1 cut(s) 1069
Eco24I GRGCYC 1 cut(s) 899
Eco31I GGTCTC 2 cut(s) 780, 1022
Eco47I GGWCC 3 cut(s) 953, 1212, 1261
Eco47III AGCGCT 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 471
EcoRII CCWGG 1 cut(s) 1264
EcoT14I CCWWGG 2 cut(s) 387, 1146
EcoT38I GRGCYC 1 cut(s) 899
ErhI CCWWGG 2 cut(s) 387, 1146
FaeI CATG 5 cut(s) 382, 391, 631, 715, 913
FaqI GGGAC 2 cut(s) 295, 1247
FatI CATG 5 cut(s) 378, 387, 627, 711, 909
FbaI TGATCA 1 cut(s) 109
FblI GTMKAC 3 cut(s) 253, 744, 829
Fnu4HI GCNGC 4 cut(s) 639, 1076, 1200, 1253
FokI GGATG 1 cut(s) 1219
FriOI GRGCYC 1 cut(s) 899
Fsp4HI GCNGC 4 cut(s) 639, 1076, 1200, 1253
FspBI CTAG 5 cut(s) 272, 818, 848, 869, 1121
GlaI GCGC 1 cut(s) 262
GluI GCNGC 4 cut(s) 639, 1076, 1200, 1253
GsaI CCCAGC 1 cut(s) 261
HaeII RGCGCY 1 cut(s) 264
HaeIII GGCC 2 cut(s) 344, 1069
HapII CCGG 1 cut(s) 1052
HhaI GCGC 1 cut(s) 263
Hin1I GRCGYC 1 cut(s) 992
Hin1II CATG 5 cut(s) 382, 391, 631, 715, 913
Hin6I GCGC 1 cut(s) 261
HinP1I GCGC 1 cut(s) 261
HinfI GANTC 4 cut(s) 329, 621, 865, 1096
HpaII CCGG 1 cut(s) 1052
Hpy166II GTNNAC 4 cut(s) 254, 680, 745, 830
Hpy188I TCNGA 7 cut(s) 184, 490, 557, 1036, 1062, 1216, 1324
Hpy188III TCNNGA 5 cut(s) 48, 333, 779, 853, 988
Hpy8I GTNNAC 4 cut(s) 254, 680, 745, 830
Hpy99I CGWCG 1 cut(s) 994
HpyAV CCTTC 2 cut(s) 776, 1266
HpyCH4III ACNGT 3 cut(s) 289, 403, 949
HpyCH4IV ACGT 3 cut(s) 437, 992, 1091
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 314, 476, 647, 1075, 1117
HpyF3I CTNAG 2 cut(s) 192, 1321
HpySE526I ACGT 3 cut(s) 437, 992, 1091
Hsp92I GRCGYC 1 cut(s) 992
Hsp92II CATG 5 cut(s) 382, 391, 631, 715, 913
HspAI GCGC 1 cut(s) 261
Ksp22I TGATCA 1 cut(s) 109
KspI CCGCGG 1 cut(s) 584
Kzo9I GATC 4 cut(s) 109, 775, 913, 1036
LguI GCTCTTC 1 cut(s) 81
Lsp1109I GCAGC 3 cut(s) 625, 1062, 1186
MaeI CTAG 5 cut(s) 272, 818, 848, 869, 1121
MaeII ACGT 3 cut(s) 437, 992, 1091
MaeIII GTNAC 1 cut(s) 319
MalI GATC 4 cut(s) 111, 777, 915, 1038
MboI GATC 4 cut(s) 109, 775, 913, 1036
MboII GAAGA 6 cut(s) 11, 68, 184, 197, 247, 477
MfeI CAATTG 2 cut(s) 671, 810
MflI RGATCY 2 cut(s) 775, 913
MhlI GDGCHC 2 cut(s) 682, 899
MmeI TCCRAC 4 cut(s) 177, 237, 413, 931
MseI TTAA 3 cut(s) 600, 1088, 1140
MslI CAYNNNNRTG 2 cut(s) 392, 1241
MspA1I CMGCKG 3 cut(s) 583, 1199, 1241
MspI CCGG 1 cut(s) 1052
MspR9I CCNGG 2 cut(s) 1052, 1266
MunI CAATTG 2 cut(s) 671, 810
Mva1269I GAATGC 2 cut(s) 513, 862
MvaI CCWGG 1 cut(s) 1266
MvnI CGCG 2 cut(s) 583, 989
MwoI GCNNNNNNNGC 6 cut(s) 11, 314, 476, 647, 1075, 1117
NciI CCSGG 1 cut(s) 1052
NcoI CCATGG 1 cut(s) 387
NdeII GATC 4 cut(s) 109, 775, 913, 1036
NlaIII CATG 5 cut(s) 382, 391, 631, 715, 913
NlaIV GGNNCC 3 cut(s) 874, 915, 1263
NmuCI GTSAC 1 cut(s) 319
NruI TCGCGA 1 cut(s) 989
OliI CACNNNNGTG 1 cut(s) 1241
PceI AGGCCT 1 cut(s) 1069
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 2 cut(s) 513, 862
PfeI GAWTC 4 cut(s) 329, 621, 865, 1096
PkrI GCNGC 4 cut(s) 640, 1077, 1201, 1254
Psp1406I AACGTT 1 cut(s) 1091
Psp6I CCWGG 1 cut(s) 1264
PspFI CCCAGC 1 cut(s) 257
PspGI CCWGG 1 cut(s) 1264
PspN4I GGNNCC 3 cut(s) 874, 915, 1263
PspPI GGNCC 3 cut(s) 953, 1212, 1261
PsrI GAACNNNNNNTAC 2 cut(s) 747, 779
PstI CTGCAG 1 cut(s) 319
PsuI RGATCY 2 cut(s) 775, 913
PvuII CAGCTG 2 cut(s) 1199, 1241
RruI TCGCGA 1 cut(s) 989
RsaI GTAC 3 cut(s) 440, 772, 1223
RsaNI GTAC 3 cut(s) 439, 771, 1222
RseI CAYNNNNRTG 2 cut(s) 392, 1241
SacII CCGCGG 1 cut(s) 584
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 3 cut(s) 600, 1088, 1140
SatI GCNGC 4 cut(s) 639, 1076, 1200, 1253
Sau3AI GATC 4 cut(s) 109, 775, 913, 1036
Sau96I GGNCC 3 cut(s) 953, 1212, 1261
ScrFI CCNGG 2 cut(s) 1052, 1266
SduI GDGCHC 2 cut(s) 682, 899
SfcI CTRYAG 2 cut(s) 315, 957
Sfr303I CCGCGG 1 cut(s) 584
SgrBI CCGCGG 1 cut(s) 584
SinI GGWCC 3 cut(s) 953, 1212, 1261
SmiMI CAYNNNNRTG 2 cut(s) 392, 1241
SmlI CTYRAG 1 cut(s) 1225
SmoI CTYRAG 1 cut(s) 1225
SseBI AGGCCT 1 cut(s) 1069
SsiI CCGC 4 cut(s) 581, 583, 596, 1253
SspMI CTAG 5 cut(s) 272, 818, 848, 869, 1121
StuI AGGCCT 1 cut(s) 1069
StyD4I CCNGG 2 cut(s) 1050, 1264
StyI CCWWGG 2 cut(s) 387, 1146
TaaI ACNGT 3 cut(s) 289, 403, 949
TaiI ACGT 3 cut(s) 440, 995, 1094
TatI WGTACW 1 cut(s) 770
TauI GCSGC 1 cut(s) 1255
TfiI GAWTC 4 cut(s) 329, 621, 865, 1096
Tru1I TTAA 3 cut(s) 600, 1088, 1140
Tru9I TTAA 3 cut(s) 600, 1088, 1140
TscAI CASTG 1 cut(s) 324
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 3 cut(s) 638, 1075, 1199
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 3 cut(s) 534, 577, 1221
TspRI CASTG 1 cut(s) 324
VneI GTGCAC 1 cut(s) 678
VpaK11BI GGWCC 3 cut(s) 953, 1212, 1261
XapI RAATTY 4 cut(s) 66, 149, 492, 502
XmiI GTMKAC 3 cut(s) 253, 744, 829
XspI CTAG 5 cut(s) 272, 818, 848, 869, 1121
ZraI GACGTC 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.