RchiOBHm_Chr5g0050121

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004761
Physical Location & Seq
Reverse (-)
48589714 .. 48599221
9508 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32775

Sequence Viewer

Length: 1422 bp
ATGGCATTTCTGGCTCCTCCTCCTCCTTGTTGTTGCGTTGGTTCTTCAAGATTGGTGCAAAAGCAAATTCACGCTCTTCCACTCGCACTCCCACTCCAACTTGATCATAAACCACTTTATCTCCCAACTCCAAAACCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCCACATTGAAGAGAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGAATCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTTGTAACAGGTCTGCTAGTAGCCGAAGTTAATGTGAATACTATGTCTCAACTCGGTTCTGGCAGTGTATCACTGGTATCCATGGCTATGAGGACTGTTGGTAAAGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTCGGAGGCATTTGCTACTTTGGAAGTCCGCGGTTCATTGGTGCGGTTAATGGGGTTCTGGTAATTGGAATCATCATATCTTTTGCTGCTCTTGTGGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCTGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCAACGTCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCAGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATATCATTTCCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

473

Amino Acids

50.42

Weight (kDa)

7.47

Isoelectric Point (pI)

37.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 81 - 457 8.6e-74 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 316, 359
AccI GTMKAC 2 cut(s) 813, 898
AccII CGCG 1 cut(s) 652
AciI CCGC 4 cut(s) 650, 652, 665, 1322
AclI AACGTT 1 cut(s) 1160
AclWI GGATC 2 cut(s) 977, 990
AcsI RAATTY 4 cut(s) 66, 143, 561, 571
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 3 cut(s) 509, 841, 1292
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 6 cut(s) 48, 229, 491, 757, 851, 959
AjnI CCWGG 1 cut(s) 1333
AleI CACNNNNGTG 1 cut(s) 1310
AluBI AGCT 3 cut(s) 773, 1268, 1310
AluI AGCT 3 cut(s) 773, 1268, 1310
Alw21I GWGCWC 1 cut(s) 751
Alw26I GTCTC 2 cut(s) 426, 849
Alw44I GTGCAC 1 cut(s) 747
AlwI GGATC 2 cut(s) 977, 990
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 2 cut(s) 336, 1136
ApaLI GTGCAC 1 cut(s) 747
ApeKI GCWGC 4 cut(s) 707, 1013, 1144, 1268
ApoI RAATTY 4 cut(s) 66, 143, 561, 571
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 1022, 1281
AsuC2I CCSGG 1 cut(s) 1121
AvaII GGWCC 2 cut(s) 1022, 1281
BaeGI GKGCMC 1 cut(s) 751
BaeI ACNNNNGTAYC 2 cut(s) 1282, 1315
BamHI GGATCC 1 cut(s) 982
BanII GRGCYC 1 cut(s) 968
Bbv12I GWGCWC 1 cut(s) 751
BbvI GCAGC 4 cut(s) 694, 1000, 1131, 1255
BccI CCATC 1 cut(s) 953
BciT130I CCWGG 1 cut(s) 1335
BciVI GTATCC 2 cut(s) 305, 463
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 1121
BcoDI GTCTC 2 cut(s) 426, 849
BfaI CTAG 6 cut(s) 266, 392, 887, 917, 938, 1190
BfmI CTRYAG 2 cut(s) 309, 1026
BfoI RGCGCY 1 cut(s) 258
BfuAI ACCTGC 2 cut(s) 316, 359
BfuI GTATCC 2 cut(s) 305, 463
BglII AGATCT 1 cut(s) 844
BisI GCNGC 5 cut(s) 708, 1014, 1145, 1269, 1322
BlsI GCNGC 5 cut(s) 709, 1015, 1146, 1270, 1323
Bme1390I CCNGG 2 cut(s) 1121, 1335
Bme18I GGWCC 2 cut(s) 1022, 1281
BmgT120I GGNCC 2 cut(s) 1022, 1281
BmiI GGNNCC 4 cut(s) 15, 943, 984, 1332
BmrFI CCNGG 2 cut(s) 1121, 1335
BplI GAGNNNNNCTC 4 cut(s) 1025, 1057, 1329, 1361
BpuEI CTTGAG 1 cut(s) 1279
BpuMI CCSGG 1 cut(s) 1121
BsaI GGTCTC 1 cut(s) 849
BsaJI CCNNGG 4 cut(s) 282, 456, 650, 1215
BsaXI ACNNNNNCTCC 8 cut(s) 72, 78, 102, 105, 108, 135, 1230, 1260
Bse1I ACTGG 2 cut(s) 453, 1172
Bse3DI GCAATG 2 cut(s) 1184, 1278
BseBI CCWGG 1 cut(s) 1335
BseDI CCNNGG 4 cut(s) 282, 456, 650, 1215
BseGI GGATG 1 cut(s) 1301
BseMI GCAATG 2 cut(s) 1184, 1278
BseMII CTCAG 2 cut(s) 177, 1404
BseNI ACTGG 2 cut(s) 453, 1172
BseRI GAGGAG 3 cut(s) 6, 9, 12
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 4 cut(s) 694, 1000, 1131, 1255
Bsh1236I CGCG 1 cut(s) 652
BshFI GGCC 2 cut(s) 338, 1138
BsiHKAI GWGCWC 1 cut(s) 751
BsiSI CCGG 1 cut(s) 1121
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 2 cut(s) 426, 849
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 2 cut(s) 582, 931
BsnI GGCC 2 cut(s) 338, 1138
Bso31I GGTCTC 1 cut(s) 849
Bsp1286I GDGCHC 2 cut(s) 751, 968
Bsp1407I TGTACA 1 cut(s) 839
Bsp143I GATC 4 cut(s) 103, 844, 982, 1105
Bsp19I CCATGG 1 cut(s) 456
BspACI CCGC 4 cut(s) 650, 652, 665, 1322
BspANI GGCC 2 cut(s) 338, 1138
BspCNI CTCAG 2 cut(s) 178, 1403
BspFNI CGCG 1 cut(s) 652
BspLI GGNNCC 4 cut(s) 15, 943, 984, 1332
BspMAI CTGCAG 1 cut(s) 313
BspMI ACCTGC 2 cut(s) 316, 359
BspPI GGATC 2 cut(s) 977, 990
BspQI GCTCTTC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 849
BsrDI GCAATG 2 cut(s) 1184, 1278
BsrGI TGTACA 1 cut(s) 839
BsrI ACTGG 2 cut(s) 453, 1172
BssECI CCNNGG 4 cut(s) 282, 456, 650, 1215
BssMI GATC 4 cut(s) 103, 844, 982, 1105
BssNAI GTATAC 2 cut(s) 814, 899
BssT1I CCWWGG 2 cut(s) 456, 1215
Bst1107I GTATAC 2 cut(s) 814, 899
Bst2UI CCWGG 1 cut(s) 1335
Bst4CI ACNGT 2 cut(s) 283, 472
Bst6I CTCTTC 3 cut(s) 81, 174, 224
BstAPI GCANNNNNTGC 1 cut(s) 308
BstAUI TGTACA 1 cut(s) 839
BstC8I GCNNGC 1 cut(s) 1136
BstDEI CTNAG 2 cut(s) 186, 1390
BstDSI CCRYGG 3 cut(s) 282, 456, 650
BstF5I GGATG 1 cut(s) 1301
BstFNI CGCG 1 cut(s) 652
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 106, 847, 985, 1108
BstMAI GTCTC 2 cut(s) 426, 849
BstMBI GATC 4 cut(s) 103, 844, 982, 1105
BstMWI GCNNNNNNNGC 6 cut(s) 11, 308, 545, 716, 1144, 1186
BstNI CCWGG 1 cut(s) 1335
BstSCI CCNGG 2 cut(s) 1119, 1333
BstSFI CTRYAG 2 cut(s) 309, 1026
BstSLI GKGCMC 1 cut(s) 751
BstUI CGCG 1 cut(s) 652
BstV1I GCAGC 4 cut(s) 694, 1000, 1131, 1255
BstX2I RGATCY 2 cut(s) 844, 982
BstXI CCANNNNNNTGG 1 cut(s) 326
BstYI RGATCY 2 cut(s) 844, 982
BstZ17I GTATAC 2 cut(s) 814, 899
BsuI GTATCC 2 cut(s) 305, 463
BsuRI GGCC 2 cut(s) 338, 1138
BtgI CCRYGG 3 cut(s) 282, 456, 650
BtsCI GGATG 1 cut(s) 1301
BtsI GCAGTG 2 cut(s) 318, 445
BtsIMutI CAGTG 3 cut(s) 318, 445, 446
BveI ACCTGC 2 cut(s) 316, 359
Cac8I GCNNGC 1 cut(s) 1136
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 1022, 1281
Cfr42I CCGCGG 1 cut(s) 653
Csp6I GTAC 3 cut(s) 508, 840, 1291
CviAII CATG 4 cut(s) 373, 457, 781, 979
CviQI GTAC 3 cut(s) 508, 840, 1291
DdeI CTNAG 2 cut(s) 186, 1390
DpnI GATC 4 cut(s) 105, 846, 984, 1107
DpnII GATC 4 cut(s) 103, 844, 982, 1105
DraI TTTAAA 1 cut(s) 1210
Eam1104I CTCTTC 3 cut(s) 81, 174, 224
EarI CTCTTC 3 cut(s) 81, 174, 224
Eco130I CCWWGG 2 cut(s) 456, 1215
Eco147I AGGCCT 1 cut(s) 1138
Eco24I GRGCYC 1 cut(s) 968
Eco31I GGTCTC 1 cut(s) 849
Eco47I GGWCC 2 cut(s) 1022, 1281
Eco47III AGCGCT 1 cut(s) 256
Eco57I CTGAAG 1 cut(s) 540
EcoRII CCWGG 1 cut(s) 1333
EcoT14I CCWWGG 2 cut(s) 456, 1215
EcoT38I GRGCYC 1 cut(s) 968
ErhI CCWWGG 2 cut(s) 456, 1215
FaeI CATG 4 cut(s) 376, 460, 784, 982
FaqI GGGAC 1 cut(s) 289
FatI CATG 4 cut(s) 372, 456, 780, 978
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 2 cut(s) 813, 898
Fnu4HI GCNGC 5 cut(s) 708, 1014, 1145, 1269, 1322
FokI GGATG 1 cut(s) 1288
FriOI GRGCYC 1 cut(s) 968
Fsp4HI GCNGC 5 cut(s) 708, 1014, 1145, 1269, 1322
FspBI CTAG 6 cut(s) 266, 392, 887, 917, 938, 1190
GlaI GCGC 1 cut(s) 256
GluI GCNGC 5 cut(s) 708, 1014, 1145, 1269, 1322
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 2 cut(s) 338, 1138
HapII CCGG 1 cut(s) 1121
HhaI GCGC 1 cut(s) 257
Hin1II CATG 4 cut(s) 376, 460, 784, 982
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 4 cut(s) 323, 690, 934, 1165
HpaII CCGG 1 cut(s) 1121
Hpy166II GTNNAC 3 cut(s) 749, 814, 899
Hpy188I TCNGA 8 cut(s) 178, 559, 626, 1105, 1131, 1256, 1285, 1393
Hpy188III TCNNGA 4 cut(s) 48, 327, 848, 922
Hpy8I GTNNAC 3 cut(s) 749, 814, 899
HpyAV CCTTC 2 cut(s) 845, 1335
HpyCH4III ACNGT 2 cut(s) 283, 472
HpyCH4IV ACGT 3 cut(s) 506, 1061, 1160
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 308, 545, 716, 1144, 1186
HpyF3I CTNAG 2 cut(s) 186, 1390
HpySE526I ACGT 3 cut(s) 506, 1061, 1160
Hsp92II CATG 4 cut(s) 376, 460, 784, 982
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 103
KspI CCGCGG 1 cut(s) 653
Kzo9I GATC 4 cut(s) 103, 844, 982, 1105
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 4 cut(s) 694, 1000, 1131, 1255
MaeI CTAG 6 cut(s) 266, 392, 887, 917, 938, 1190
MaeII ACGT 3 cut(s) 506, 1061, 1160
MaeIII GTNAC 2 cut(s) 313, 379
MalI GATC 4 cut(s) 105, 846, 984, 1107
MboI GATC 4 cut(s) 103, 844, 982, 1105
MboII GAAGA 6 cut(s) 36, 68, 178, 191, 241, 546
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 2 cut(s) 844, 982
MhlI GDGCHC 2 cut(s) 751, 968
MmeI TCCRAC 5 cut(s) 121, 171, 231, 482, 1000
MseI TTAA 4 cut(s) 405, 669, 1157, 1209
MslI CAYNNNNRTG 2 cut(s) 461, 1310
MspA1I CMGCKG 3 cut(s) 652, 1268, 1310
MspI CCGG 1 cut(s) 1121
MspR9I CCNGG 2 cut(s) 1121, 1335
MunI CAATTG 1 cut(s) 740
Mva1269I GAATGC 2 cut(s) 582, 931
MvaI CCWGG 1 cut(s) 1335
MvnI CGCG 1 cut(s) 652
MwoI GCNNNNNNNGC 6 cut(s) 11, 308, 545, 716, 1144, 1186
NciI CCSGG 1 cut(s) 1121
NcoI CCATGG 1 cut(s) 456
NdeII GATC 4 cut(s) 103, 844, 982, 1105
NlaIII CATG 4 cut(s) 376, 460, 784, 982
NlaIV GGNNCC 4 cut(s) 15, 943, 984, 1332
NmuCI GTSAC 1 cut(s) 313
OliI CACNNNNGTG 1 cut(s) 1310
PceI AGGCCT 1 cut(s) 1138
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 2 cut(s) 582, 931
PfeI GAWTC 4 cut(s) 323, 690, 934, 1165
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 5 cut(s) 709, 1015, 1146, 1270, 1323
Psp1406I AACGTT 1 cut(s) 1160
Psp6I CCWGG 1 cut(s) 1333
PspGI CCWGG 1 cut(s) 1333
PspN4I GGNNCC 4 cut(s) 15, 943, 984, 1332
PspPI GGNCC 2 cut(s) 1022, 1281
PsrI GAACNNNNNNTAC 2 cut(s) 816, 848
PstI CTGCAG 1 cut(s) 313
PsuI RGATCY 2 cut(s) 844, 982
PvuII CAGCTG 2 cut(s) 1268, 1310
RsaI GTAC 3 cut(s) 509, 841, 1292
RsaNI GTAC 3 cut(s) 508, 840, 1291
RseI CAYNNNNRTG 2 cut(s) 461, 1310
SacII CCGCGG 1 cut(s) 653
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 4 cut(s) 405, 669, 1157, 1209
SatI GCNGC 5 cut(s) 708, 1014, 1145, 1269, 1322
Sau3AI GATC 4 cut(s) 103, 844, 982, 1105
Sau96I GGNCC 2 cut(s) 1022, 1281
ScrFI CCNGG 2 cut(s) 1121, 1335
SduI GDGCHC 2 cut(s) 751, 968
SfcI CTRYAG 2 cut(s) 309, 1026
Sfr303I CCGCGG 1 cut(s) 653
SgrBI CCGCGG 1 cut(s) 653
SinI GGWCC 2 cut(s) 1022, 1281
SmiMI CAYNNNNRTG 2 cut(s) 461, 1310
SmlI CTYRAG 1 cut(s) 1294
SmoI CTYRAG 1 cut(s) 1294
SseBI AGGCCT 1 cut(s) 1138
SsiI CCGC 4 cut(s) 650, 652, 665, 1322
SspMI CTAG 6 cut(s) 266, 392, 887, 917, 938, 1190
StuI AGGCCT 1 cut(s) 1138
StyD4I CCNGG 2 cut(s) 1119, 1333
StyI CCWWGG 2 cut(s) 456, 1215
TaaI ACNGT 2 cut(s) 283, 472
TaiI ACGT 3 cut(s) 509, 1064, 1163
TaqI TCGA 1 cut(s) 878
TatI WGTACW 1 cut(s) 839
TauI GCSGC 1 cut(s) 1324
TfiI GAWTC 4 cut(s) 323, 690, 934, 1165
Tru1I TTAA 4 cut(s) 405, 669, 1157, 1209
Tru9I TTAA 4 cut(s) 405, 669, 1157, 1209
TscAI CASTG 3 cut(s) 318, 445, 453
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 4 cut(s) 707, 1013, 1144, 1268
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 3 cut(s) 603, 646, 1290
TspRI CASTG 3 cut(s) 318, 445, 453
VneI GTGCAC 1 cut(s) 747
VpaK11BI GGWCC 2 cut(s) 1022, 1281
XapI RAATTY 4 cut(s) 66, 143, 561, 571
XmiI GTMKAC 2 cut(s) 813, 898
XspI CTAG 6 cut(s) 266, 392, 887, 917, 938, 1190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.