Rh5AG330600

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004761
Physical Location & Seq
Reverse (-)
50724973 .. 50735034
10062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG330600.1

Sequence Viewer

Length: 1425 bp
ATGGCATTTCTGGCTTCTCCTCCTCCTCCTTGTTGTAGCGTTGGTTCTTCAAGATTGGTGCAAAAGCAAATTCACGGTCTTCCACTCGCACTCCGACTCCAACTTGATCATAAACCACTTTATCTCCCAACTCCAAATCCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCCACATTGAAGAGAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGAATCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTTGTAACAGGTCTGCTAGTAGCCGAAGTTAATGTGAATACTATGTCTCAACTCGGTTCTGGCAGTGTATCACTGGTATCCATGGCTATGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTCGGAGGCATTTGCTACTTTGGAAGTCCGCGGTTCATTGGTGCGGTTAATGGGGTTCTGGTAATTGGAATCATCATATCTTTTGCTGCTCTTGTGGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCTGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTCGCTATCGCGACATCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTAGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCTCAGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATATCATTTCCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

474

Amino Acids

50.51

Weight (kDa)

6.81

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 82 - 458 1e-73 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 319, 362
AccI GTMKAC 2 cut(s) 816, 901
AccII CGCG 2 cut(s) 655, 1061
AciI CCGC 3 cut(s) 653, 655, 668
AclI AACGTT 1 cut(s) 1163
AclWI GGATC 2 cut(s) 980, 993
AcsI RAATTY 4 cut(s) 69, 146, 564, 574
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 3 cut(s) 512, 844, 1295
AfeI AGCGCT 1 cut(s) 259
AgsI TTSAA 6 cut(s) 51, 232, 494, 760, 854, 962
AjnI CCWGG 1 cut(s) 1336
AleI CACNNNNGTG 1 cut(s) 1313
AluBI AGCT 3 cut(s) 776, 1271, 1313
AluI AGCT 3 cut(s) 776, 1271, 1313
Alw21I GWGCWC 1 cut(s) 754
Alw26I GTCTC 2 cut(s) 429, 852
Alw44I GTGCAC 1 cut(s) 750
AlwI GGATC 2 cut(s) 980, 993
Aor51HI AGCGCT 1 cut(s) 259
AoxI GGCC 2 cut(s) 339, 1139
ApaLI GTGCAC 1 cut(s) 750
ApeKI GCWGC 4 cut(s) 710, 1016, 1147, 1271
ApoI RAATTY 4 cut(s) 69, 146, 564, 574
ArsI GACNNNNNNTTYG 4 cut(s) 61, 93, 146, 178
AspLEI GCGC 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 1025, 1284
AsuC2I CCSGG 1 cut(s) 1124
AvaII GGWCC 2 cut(s) 1025, 1284
BaeGI GKGCMC 1 cut(s) 754
BaeI ACNNNNGTAYC 2 cut(s) 1285, 1318
BamHI GGATCC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 971
BbsI GAAGAC 1 cut(s) 71
Bbv12I GWGCWC 1 cut(s) 754
BbvI GCAGC 4 cut(s) 697, 1003, 1134, 1258
BccI CCATC 1 cut(s) 956
BciT130I CCWGG 1 cut(s) 1338
BciVI GTATCC 2 cut(s) 308, 466
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 1124
BcoDI GTCTC 2 cut(s) 429, 852
BfaI CTAG 6 cut(s) 269, 395, 890, 920, 941, 1193
BfmI CTRYAG 2 cut(s) 312, 1029
BfoI RGCGCY 1 cut(s) 261
BfuAI ACCTGC 2 cut(s) 319, 362
BfuI GTATCC 2 cut(s) 308, 466
BglII AGATCT 1 cut(s) 847
BisI GCNGC 4 cut(s) 711, 1017, 1148, 1272
BlsI GCNGC 4 cut(s) 712, 1018, 1149, 1273
Bme1390I CCNGG 2 cut(s) 1124, 1338
Bme18I GGWCC 2 cut(s) 1025, 1284
BmgT120I GGNCC 2 cut(s) 1025, 1284
BmiI GGNNCC 3 cut(s) 946, 987, 1335
BmrFI CCNGG 2 cut(s) 1124, 1338
BpiI GAAGAC 1 cut(s) 71
BplI GAGNNNNNCTC 4 cut(s) 1028, 1060, 1332, 1364
BpuEI CTTGAG 1 cut(s) 1282
BpuMI CCSGG 1 cut(s) 1124
BsaI GGTCTC 1 cut(s) 852
BsaJI CCNNGG 4 cut(s) 285, 459, 653, 1218
BsaXI ACNNNNNCTCC 8 cut(s) 75, 81, 105, 108, 111, 138, 1233, 1263
Bse1I ACTGG 2 cut(s) 456, 1175
Bse3DI GCAATG 2 cut(s) 1187, 1281
BseBI CCWGG 1 cut(s) 1338
BseDI CCNNGG 4 cut(s) 285, 459, 653, 1218
BseGI GGATG 1 cut(s) 1304
BseMI GCAATG 2 cut(s) 1187, 1281
BseMII CTCAG 3 cut(s) 180, 1340, 1407
BseNI ACTGG 2 cut(s) 456, 1175
BseRI GAGGAG 3 cut(s) 9, 12, 15
BseSI GKGCMC 1 cut(s) 754
BseXI GCAGC 4 cut(s) 697, 1003, 1134, 1258
Bsh1236I CGCG 2 cut(s) 655, 1061
BshFI GGCC 2 cut(s) 341, 1141
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 1 cut(s) 1124
BslFI GGGAC 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 429, 852
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 2 cut(s) 585, 934
BsnI GGCC 2 cut(s) 341, 1141
Bso31I GGTCTC 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 754, 971
Bsp1407I TGTACA 1 cut(s) 842
Bsp143I GATC 4 cut(s) 106, 847, 985, 1108
Bsp19I CCATGG 1 cut(s) 459
Bsp68I TCGCGA 1 cut(s) 1061
BspACI CCGC 3 cut(s) 653, 655, 668
BspANI GGCC 2 cut(s) 341, 1141
BspCNI CTCAG 3 cut(s) 181, 1339, 1406
BspFNI CGCG 2 cut(s) 655, 1061
BspLI GGNNCC 3 cut(s) 946, 987, 1335
BspMAI CTGCAG 1 cut(s) 316
BspMI ACCTGC 2 cut(s) 319, 362
BspPI GGATC 2 cut(s) 980, 993
BspTNI GGTCTC 1 cut(s) 852
BsrDI GCAATG 2 cut(s) 1187, 1281
BsrGI TGTACA 1 cut(s) 842
BsrI ACTGG 2 cut(s) 456, 1175
BssECI CCNNGG 4 cut(s) 285, 459, 653, 1218
BssMI GATC 4 cut(s) 106, 847, 985, 1108
BssNAI GTATAC 2 cut(s) 817, 902
BssT1I CCWWGG 2 cut(s) 459, 1218
Bst1107I GTATAC 2 cut(s) 817, 902
Bst2UI CCWGG 1 cut(s) 1338
Bst4CI ACNGT 3 cut(s) 77, 286, 475
Bst6I CTCTTC 2 cut(s) 177, 227
BstAPI GCANNNNNTGC 1 cut(s) 311
BstAUI TGTACA 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 1139
BstDEI CTNAG 3 cut(s) 189, 1326, 1393
BstDSI CCRYGG 3 cut(s) 285, 459, 653
BstF5I GGATG 1 cut(s) 1304
BstFNI CGCG 2 cut(s) 655, 1061
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstKTI GATC 4 cut(s) 109, 850, 988, 1111
BstMAI GTCTC 2 cut(s) 429, 852
BstMBI GATC 4 cut(s) 106, 847, 985, 1108
BstMWI GCNNNNNNNGC 6 cut(s) 11, 311, 548, 719, 1147, 1189
BstNI CCWGG 1 cut(s) 1338
BstSCI CCNGG 2 cut(s) 1122, 1336
BstSFI CTRYAG 2 cut(s) 312, 1029
BstSLI GKGCMC 1 cut(s) 754
BstUI CGCG 2 cut(s) 655, 1061
BstV1I GCAGC 4 cut(s) 697, 1003, 1134, 1258
BstV2I GAAGAC 1 cut(s) 71
BstX2I RGATCY 2 cut(s) 847, 985
BstXI CCANNNNNNTGG 1 cut(s) 329
BstYI RGATCY 2 cut(s) 847, 985
BstZ17I GTATAC 2 cut(s) 817, 902
BsuI GTATCC 2 cut(s) 308, 466
BsuRI GGCC 2 cut(s) 341, 1141
BtgI CCRYGG 3 cut(s) 285, 459, 653
BtsCI GGATG 1 cut(s) 1304
BtsI GCAGTG 2 cut(s) 321, 448
BtsIMutI CAGTG 3 cut(s) 321, 448, 449
BtuMI TCGCGA 1 cut(s) 1061
BveI ACCTGC 2 cut(s) 319, 362
Cac8I GCNNGC 1 cut(s) 1139
CfoI GCGC 1 cut(s) 260
Cfr13I GGNCC 2 cut(s) 1025, 1284
Cfr42I CCGCGG 1 cut(s) 656
Csp6I GTAC 3 cut(s) 511, 843, 1294
CviAII CATG 4 cut(s) 376, 460, 784, 982
CviQI GTAC 3 cut(s) 511, 843, 1294
DdeI CTNAG 3 cut(s) 189, 1326, 1393
DpnI GATC 4 cut(s) 108, 849, 987, 1110
DpnII GATC 4 cut(s) 106, 847, 985, 1108
DraI TTTAAA 1 cut(s) 1213
Eam1104I CTCTTC 2 cut(s) 177, 227
EarI CTCTTC 2 cut(s) 177, 227
Eco130I CCWWGG 2 cut(s) 459, 1218
Eco147I AGGCCT 1 cut(s) 1141
Eco24I GRGCYC 1 cut(s) 971
Eco31I GGTCTC 1 cut(s) 852
Eco47I GGWCC 2 cut(s) 1025, 1284
Eco47III AGCGCT 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 543
EcoRII CCWGG 1 cut(s) 1336
EcoT14I CCWWGG 2 cut(s) 459, 1218
EcoT38I GRGCYC 1 cut(s) 971
ErhI CCWWGG 2 cut(s) 459, 1218
FaeI CATG 4 cut(s) 379, 463, 787, 985
FaqI GGGAC 1 cut(s) 292
FatI CATG 4 cut(s) 375, 459, 783, 981
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 2 cut(s) 816, 901
Fnu4HI GCNGC 4 cut(s) 711, 1017, 1148, 1272
FokI GGATG 1 cut(s) 1291
FriOI GRGCYC 1 cut(s) 971
Fsp4HI GCNGC 4 cut(s) 711, 1017, 1148, 1272
FspBI CTAG 6 cut(s) 269, 395, 890, 920, 941, 1193
GlaI GCGC 1 cut(s) 259
GluI GCNGC 4 cut(s) 711, 1017, 1148, 1272
HaeII RGCGCY 1 cut(s) 261
HaeIII GGCC 2 cut(s) 341, 1141
HapII CCGG 1 cut(s) 1124
HhaI GCGC 1 cut(s) 260
Hin1II CATG 4 cut(s) 379, 463, 787, 985
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 5 cut(s) 96, 326, 693, 937, 1168
HpaII CCGG 1 cut(s) 1124
Hpy166II GTNNAC 3 cut(s) 752, 817, 902
Hpy188I TCNGA 9 cut(s) 95, 181, 562, 629, 1108, 1134, 1259, 1288, 1396
Hpy188III TCNNGA 5 cut(s) 51, 330, 851, 925, 1060
Hpy8I GTNNAC 3 cut(s) 752, 817, 902
HpyAV CCTTC 2 cut(s) 848, 1338
HpyCH4III ACNGT 3 cut(s) 77, 286, 475
HpyCH4IV ACGT 2 cut(s) 509, 1163
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 311, 548, 719, 1147, 1189
HpyF3I CTNAG 3 cut(s) 189, 1326, 1393
HpySE526I ACGT 2 cut(s) 509, 1163
Hsp92II CATG 4 cut(s) 379, 463, 787, 985
HspAI GCGC 1 cut(s) 258
Ksp22I TGATCA 1 cut(s) 106
KspI CCGCGG 1 cut(s) 656
Kzo9I GATC 4 cut(s) 106, 847, 985, 1108
Lsp1109I GCAGC 4 cut(s) 697, 1003, 1134, 1258
MaeI CTAG 6 cut(s) 269, 395, 890, 920, 941, 1193
MaeII ACGT 2 cut(s) 509, 1163
MaeIII GTNAC 2 cut(s) 316, 382
MalI GATC 4 cut(s) 108, 849, 987, 1110
MboI GATC 4 cut(s) 106, 847, 985, 1108
MboII GAAGA 6 cut(s) 39, 71, 181, 194, 244, 549
MfeI CAATTG 1 cut(s) 743
MflI RGATCY 2 cut(s) 847, 985
MhlI GDGCHC 2 cut(s) 754, 971
MlyI GAGTC 1 cut(s) 90
MmeI TCCRAC 6 cut(s) 118, 124, 174, 234, 485, 1003
MseI TTAA 4 cut(s) 408, 672, 1160, 1212
MslI CAYNNNNRTG 2 cut(s) 464, 1313
MspA1I CMGCKG 3 cut(s) 655, 1271, 1313
MspI CCGG 1 cut(s) 1124
MspR9I CCNGG 2 cut(s) 1124, 1338
MunI CAATTG 1 cut(s) 743
Mva1269I GAATGC 2 cut(s) 585, 934
MvaI CCWGG 1 cut(s) 1338
MvnI CGCG 2 cut(s) 655, 1061
MwoI GCNNNNNNNGC 6 cut(s) 11, 311, 548, 719, 1147, 1189
NciI CCSGG 1 cut(s) 1124
NcoI CCATGG 1 cut(s) 459
NdeII GATC 4 cut(s) 106, 847, 985, 1108
NlaIII CATG 4 cut(s) 379, 463, 787, 985
NlaIV GGNNCC 3 cut(s) 946, 987, 1335
NmuCI GTSAC 1 cut(s) 316
NruI TCGCGA 1 cut(s) 1061
OliI CACNNNNGTG 1 cut(s) 1313
PceI AGGCCT 1 cut(s) 1141
PctI GAATGC 2 cut(s) 585, 934
PfeI GAWTC 4 cut(s) 326, 693, 937, 1168
PfoI TCCNGGA 1 cut(s) 1336
PkrI GCNGC 4 cut(s) 712, 1018, 1149, 1273
PleI GAGTC 1 cut(s) 90
PpsI GAGTC 1 cut(s) 90
Psp1406I AACGTT 1 cut(s) 1163
Psp6I CCWGG 1 cut(s) 1336
PspGI CCWGG 1 cut(s) 1336
PspN4I GGNNCC 3 cut(s) 946, 987, 1335
PspPI GGNCC 2 cut(s) 1025, 1284
PsrI GAACNNNNNNTAC 4 cut(s) 28, 60, 819, 851
PstI CTGCAG 1 cut(s) 316
PsuI RGATCY 2 cut(s) 847, 985
PvuII CAGCTG 2 cut(s) 1271, 1313
RruI TCGCGA 1 cut(s) 1061
RsaI GTAC 3 cut(s) 512, 844, 1295
RsaNI GTAC 3 cut(s) 511, 843, 1294
RseI CAYNNNNRTG 2 cut(s) 464, 1313
SacII CCGCGG 1 cut(s) 656
SaqAI TTAA 4 cut(s) 408, 672, 1160, 1212
SatI GCNGC 4 cut(s) 711, 1017, 1148, 1272
Sau3AI GATC 4 cut(s) 106, 847, 985, 1108
Sau96I GGNCC 2 cut(s) 1025, 1284
SchI GAGTC 1 cut(s) 90
ScrFI CCNGG 2 cut(s) 1124, 1338
SduI GDGCHC 2 cut(s) 754, 971
SfcI CTRYAG 2 cut(s) 312, 1029
Sfr303I CCGCGG 1 cut(s) 656
SgrBI CCGCGG 1 cut(s) 656
SinI GGWCC 2 cut(s) 1025, 1284
SmiMI CAYNNNNRTG 2 cut(s) 464, 1313
SmlI CTYRAG 1 cut(s) 1297
SmoI CTYRAG 1 cut(s) 1297
SseBI AGGCCT 1 cut(s) 1141
SsiI CCGC 3 cut(s) 653, 655, 668
SspMI CTAG 6 cut(s) 269, 395, 890, 920, 941, 1193
StuI AGGCCT 1 cut(s) 1141
StyD4I CCNGG 2 cut(s) 1122, 1336
StyI CCWWGG 2 cut(s) 459, 1218
TaaI ACNGT 3 cut(s) 77, 286, 475
TaiI ACGT 2 cut(s) 512, 1166
TaqI TCGA 1 cut(s) 881
TatI WGTACW 1 cut(s) 842
TfiI GAWTC 4 cut(s) 326, 693, 937, 1168
Tru1I TTAA 4 cut(s) 408, 672, 1160, 1212
Tru9I TTAA 4 cut(s) 408, 672, 1160, 1212
TscAI CASTG 3 cut(s) 321, 448, 456
TseFI GTSAC 1 cut(s) 316
TseI GCWGC 4 cut(s) 710, 1016, 1147, 1271
Tsp45I GTSAC 1 cut(s) 316
TspDTI ATGAA 3 cut(s) 606, 649, 1293
TspRI CASTG 3 cut(s) 321, 448, 456
VneI GTGCAC 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 1025, 1284
XapI RAATTY 4 cut(s) 69, 146, 564, 574
XmiI GTMKAC 2 cut(s) 816, 901
XspI CTAG 6 cut(s) 269, 395, 890, 920, 941, 1193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.