Rh5DG354100

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0004761
Physical Location & Seq
Reverse (-)
49182417 .. 49191476
9060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG354100.1

Sequence Viewer

Length: 987 bp
ATGGCATTTCTGGCTCCTCCTCCTCCTTGTTGTTGCGTTGGTTCTTCAAGATTGGTGCAAAAGCAAATTCACGCTCTTCCACTCGCACTCCCACTCCAACTTGATCATAAACCACTTTATCTCCCAACTCCAAAACCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTGTTTTCCAACCTCAACCAAGCCACATTGAAGAGAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCTGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCAACGTCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCAGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATATCATTTCCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

328

Amino Acids

35.18

Weight (kDa)

7.55

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 87 - 312 1.4e-41 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 378, 463
AciI CCGC 2 cut(s) 282, 887
AclI AACGTT 1 cut(s) 725
AclWI GGATC 2 cut(s) 542, 555
AcsI RAATTY 2 cut(s) 66, 143
AfaI GTAC 2 cut(s) 406, 857
AfeI AGCGCT 1 cut(s) 256
AgsI TTSAA 5 cut(s) 48, 229, 322, 416, 524
AjnI CCWGG 1 cut(s) 898
AleI CACNNNNGTG 1 cut(s) 875
AluBI AGCT 3 cut(s) 338, 833, 875
AluI AGCT 3 cut(s) 338, 833, 875
Alw21I GWGCWC 1 cut(s) 316
Alw26I GTCTC 1 cut(s) 414
Alw44I GTGCAC 1 cut(s) 312
AlwI GGATC 2 cut(s) 542, 555
Aor51HI AGCGCT 1 cut(s) 256
AoxI GGCC 1 cut(s) 701
ApaLI GTGCAC 1 cut(s) 312
ApeKI GCWGC 3 cut(s) 578, 709, 833
ApoI RAATTY 2 cut(s) 66, 143
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AspLEI GCGC 1 cut(s) 257
AspS9I GGNCC 2 cut(s) 587, 846
AsuC2I CCSGG 1 cut(s) 686
AvaII GGWCC 2 cut(s) 587, 846
BaeGI GKGCMC 1 cut(s) 316
BaeI ACNNNNGTAYC 2 cut(s) 847, 880
BamHI GGATCC 1 cut(s) 547
BanII GRGCYC 1 cut(s) 533
Bbv12I GWGCWC 1 cut(s) 316
BbvI GCAGC 3 cut(s) 565, 696, 820
BccI CCATC 1 cut(s) 518
BciT130I CCWGG 1 cut(s) 900
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 686
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 5 cut(s) 266, 452, 482, 503, 755
BfmI CTRYAG 1 cut(s) 591
BfoI RGCGCY 1 cut(s) 258
BglII AGATCT 1 cut(s) 409
BisI GCNGC 4 cut(s) 579, 710, 834, 887
BlsI GCNGC 4 cut(s) 580, 711, 835, 888
Bme1390I CCNGG 2 cut(s) 686, 900
Bme18I GGWCC 2 cut(s) 587, 846
BmgT120I GGNCC 2 cut(s) 587, 846
BmiI GGNNCC 4 cut(s) 15, 508, 549, 897
BmrFI CCNGG 2 cut(s) 686, 900
BplI GAGNNNNNCTC 4 cut(s) 590, 622, 894, 926
BpuEI CTTGAG 1 cut(s) 844
BpuMI CCSGG 1 cut(s) 686
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 1 cut(s) 780
BsaXI ACNNNNNCTCC 8 cut(s) 72, 78, 102, 105, 108, 135, 795, 825
Bse1I ACTGG 1 cut(s) 737
Bse3DI GCAATG 2 cut(s) 749, 843
BseBI CCWGG 1 cut(s) 900
BseDI CCNNGG 1 cut(s) 780
BseGI GGATG 1 cut(s) 866
BseMI GCAATG 2 cut(s) 749, 843
BseMII CTCAG 2 cut(s) 177, 969
BseNI ACTGG 1 cut(s) 737
BseRI GAGGAG 3 cut(s) 6, 9, 12
BseSI GKGCMC 1 cut(s) 316
BseXI GCAGC 3 cut(s) 565, 696, 820
BshFI GGCC 1 cut(s) 703
BsiHKAI GWGCWC 1 cut(s) 316
BsiSI CCGG 1 cut(s) 686
BslFI GGGAC 1 cut(s) 289
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 1 cut(s) 703
Bso31I GGTCTC 1 cut(s) 414
Bsp1286I GDGCHC 2 cut(s) 316, 533
Bsp1407I TGTACA 1 cut(s) 404
Bsp143I GATC 4 cut(s) 103, 409, 547, 670
BspACI CCGC 2 cut(s) 282, 887
BspANI GGCC 1 cut(s) 703
BspCNI CTCAG 2 cut(s) 178, 968
BspLI GGNNCC 4 cut(s) 15, 508, 549, 897
BspPI GGATC 2 cut(s) 542, 555
BspQI GCTCTTC 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 749, 843
BsrGI TGTACA 1 cut(s) 404
BsrI ACTGG 1 cut(s) 737
BssECI CCNNGG 1 cut(s) 780
BssMI GATC 4 cut(s) 103, 409, 547, 670
BssNAI GTATAC 2 cut(s) 379, 464
BssT1I CCWWGG 1 cut(s) 780
Bst1107I GTATAC 2 cut(s) 379, 464
Bst2UI CCWGG 1 cut(s) 900
Bst6I CTCTTC 3 cut(s) 81, 174, 224
BstAUI TGTACA 1 cut(s) 404
BstC8I GCNNGC 1 cut(s) 701
BstDEI CTNAG 2 cut(s) 186, 955
BstF5I GGATG 1 cut(s) 866
BstH2I RGCGCY 1 cut(s) 258
BstHHI GCGC 1 cut(s) 257
BstKTI GATC 4 cut(s) 106, 412, 550, 673
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 4 cut(s) 103, 409, 547, 670
BstMWI GCNNNNNNNGC 3 cut(s) 11, 709, 751
BstNI CCWGG 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 684, 898
BstSFI CTRYAG 1 cut(s) 591
BstSLI GKGCMC 1 cut(s) 316
BstV1I GCAGC 3 cut(s) 565, 696, 820
BstX2I RGATCY 2 cut(s) 409, 547
BstYI RGATCY 2 cut(s) 409, 547
BstZ17I GTATAC 2 cut(s) 379, 464
BsuRI GGCC 1 cut(s) 703
BtsCI GGATG 1 cut(s) 866
Cac8I GCNNGC 1 cut(s) 701
CfoI GCGC 1 cut(s) 257
Cfr13I GGNCC 2 cut(s) 587, 846
Csp6I GTAC 2 cut(s) 405, 856
CviAII CATG 2 cut(s) 346, 544
CviQI GTAC 2 cut(s) 405, 856
DdeI CTNAG 2 cut(s) 186, 955
DpnI GATC 4 cut(s) 105, 411, 549, 672
DpnII GATC 4 cut(s) 103, 409, 547, 670
DraI TTTAAA 1 cut(s) 775
Eam1104I CTCTTC 3 cut(s) 81, 174, 224
EarI CTCTTC 3 cut(s) 81, 174, 224
Eco130I CCWWGG 1 cut(s) 780
Eco147I AGGCCT 1 cut(s) 703
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 2 cut(s) 587, 846
Eco47III AGCGCT 1 cut(s) 256
EcoRII CCWGG 1 cut(s) 898
EcoT14I CCWWGG 1 cut(s) 780
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 1 cut(s) 780
FaeI CATG 2 cut(s) 349, 547
FaqI GGGAC 1 cut(s) 289
FatI CATG 2 cut(s) 345, 543
FbaI TGATCA 1 cut(s) 103
FblI GTMKAC 2 cut(s) 378, 463
Fnu4HI GCNGC 4 cut(s) 579, 710, 834, 887
FokI GGATG 1 cut(s) 853
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 4 cut(s) 579, 710, 834, 887
FspBI CTAG 5 cut(s) 266, 452, 482, 503, 755
GlaI GCGC 1 cut(s) 256
GluI GCNGC 4 cut(s) 579, 710, 834, 887
HaeII RGCGCY 1 cut(s) 258
HaeIII GGCC 1 cut(s) 703
HapII CCGG 1 cut(s) 686
HhaI GCGC 1 cut(s) 257
Hin1II CATG 2 cut(s) 349, 547
Hin6I GCGC 1 cut(s) 255
HinP1I GCGC 1 cut(s) 255
HinfI GANTC 2 cut(s) 499, 730
HpaII CCGG 1 cut(s) 686
Hpy166II GTNNAC 3 cut(s) 314, 379, 464
Hpy188I TCNGA 6 cut(s) 178, 670, 696, 821, 850, 958
Hpy188III TCNNGA 3 cut(s) 48, 413, 487
Hpy8I GTNNAC 3 cut(s) 314, 379, 464
HpyAV CCTTC 2 cut(s) 410, 900
HpyCH4IV ACGT 2 cut(s) 626, 725
HpyCH4V TGCA 6 cut(s) 58, 272, 290, 314, 565, 836
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 709, 751
HpyF3I CTNAG 2 cut(s) 186, 955
HpySE526I ACGT 2 cut(s) 626, 725
Hsp92II CATG 2 cut(s) 349, 547
HspAI GCGC 1 cut(s) 255
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 409, 547, 670
LguI GCTCTTC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 3 cut(s) 565, 696, 820
MaeI CTAG 5 cut(s) 266, 452, 482, 503, 755
MaeII ACGT 2 cut(s) 626, 725
MalI GATC 4 cut(s) 105, 411, 549, 672
MboI GATC 4 cut(s) 103, 409, 547, 670
MboII GAAGA 5 cut(s) 36, 68, 178, 191, 241
MfeI CAATTG 1 cut(s) 305
MflI RGATCY 2 cut(s) 409, 547
MhlI GDGCHC 2 cut(s) 316, 533
MluCI AATT 7 cut(s) 66, 143, 305, 360, 609, 881, 960
MmeI TCCRAC 4 cut(s) 121, 171, 231, 565
MnlI CCTC 9 cut(s) 27, 30, 33, 175, 221, 592, 896, 926, 964
MseI TTAA 2 cut(s) 722, 774
MslI CAYNNNNRTG 1 cut(s) 875
MspA1I CMGCKG 2 cut(s) 833, 875
MspI CCGG 1 cut(s) 686
MspR9I CCNGG 2 cut(s) 686, 900
MunI CAATTG 1 cut(s) 305
Mva1269I GAATGC 1 cut(s) 496
MvaI CCWGG 1 cut(s) 900
MwoI GCNNNNNNNGC 3 cut(s) 11, 709, 751
NciI CCSGG 1 cut(s) 686
NdeII GATC 4 cut(s) 103, 409, 547, 670
NlaIII CATG 2 cut(s) 349, 547
NlaIV GGNNCC 4 cut(s) 15, 508, 549, 897
OliI CACNNNNGTG 1 cut(s) 875
PceI AGGCCT 1 cut(s) 703
PciSI GCTCTTC 1 cut(s) 81
PctI GAATGC 1 cut(s) 496
PfeI GAWTC 2 cut(s) 499, 730
PfoI TCCNGGA 1 cut(s) 898
PkrI GCNGC 4 cut(s) 580, 711, 835, 888
Psp1406I AACGTT 1 cut(s) 725
Psp6I CCWGG 1 cut(s) 898
PspGI CCWGG 1 cut(s) 898
PspN4I GGNNCC 4 cut(s) 15, 508, 549, 897
PspPI GGNCC 2 cut(s) 587, 846
PsrI GAACNNNNNNTAC 2 cut(s) 381, 413
PsuI RGATCY 2 cut(s) 409, 547
PvuII CAGCTG 2 cut(s) 833, 875
RsaI GTAC 2 cut(s) 406, 857
RsaNI GTAC 2 cut(s) 405, 856
RseI CAYNNNNRTG 1 cut(s) 875
SapI GCTCTTC 1 cut(s) 81
SaqAI TTAA 2 cut(s) 722, 774
SatI GCNGC 4 cut(s) 579, 710, 834, 887
Sau3AI GATC 4 cut(s) 103, 409, 547, 670
Sau96I GGNCC 2 cut(s) 587, 846
ScrFI CCNGG 2 cut(s) 686, 900
SduI GDGCHC 2 cut(s) 316, 533
SfcI CTRYAG 1 cut(s) 591
SinI GGWCC 2 cut(s) 587, 846
SmiMI CAYNNNNRTG 1 cut(s) 875
SmlI CTYRAG 1 cut(s) 859
SmoI CTYRAG 1 cut(s) 859
Sse9I AATT 7 cut(s) 66, 143, 305, 360, 609, 881, 960
SseBI AGGCCT 1 cut(s) 703
SsiI CCGC 2 cut(s) 282, 887
SspMI CTAG 5 cut(s) 266, 452, 482, 503, 755
StuI AGGCCT 1 cut(s) 703
StyD4I CCNGG 2 cut(s) 684, 898
StyI CCWWGG 1 cut(s) 780
TaiI ACGT 2 cut(s) 629, 728
TaqI TCGA 1 cut(s) 443
TasI AATT 7 cut(s) 66, 143, 305, 360, 609, 881, 960
TatI WGTACW 1 cut(s) 404
TauI GCSGC 1 cut(s) 889
TfiI GAWTC 2 cut(s) 499, 730
Tru1I TTAA 2 cut(s) 722, 774
Tru9I TTAA 2 cut(s) 722, 774
TseI GCWGC 3 cut(s) 578, 709, 833
TspDTI ATGAA 1 cut(s) 855
VneI GTGCAC 1 cut(s) 312
VpaK11BI GGWCC 2 cut(s) 587, 846
XapI RAATTY 2 cut(s) 66, 143
XmiI GTMKAC 2 cut(s) 378, 463
XspI CTAG 5 cut(s) 266, 452, 482, 503, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.