Rw5G031250

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0004761
Physical Location & Seq
Reverse (-)
50954882 .. 50963477
8596 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G031250.1

Sequence Viewer

Length: 1392 bp
ATGGCATTTCTGGCTCCTCCTCCTCCTCCTCCTCCTTGTTGTTGTGTTGGTTCTTCAAGATTGGTGCAAAAGCAAATTCACGCTCTTCCACTCGCACTCCAACTTGATCATAAACCACTTTATCTCCCAACTCCAAATCCAAGAAAATTTGCGAAATGCCTGTCGCAGAAGAAACAATCCGAAGAGGCTGAGTTGGAAAGGCTAGAACCCCCAAGTCTATCCAGCGCTGTTTTCCTAGTTGCAGGGACTACCGTGGGTGCTGGTATCCTCGCAATACCTGCAGTGACCCAAGACTCTGGATTTCTGGCCTCTGCAATAACCTGCATTTTTTGTTGGGCATACATGGTTGTAACAGGTCTGCTAGTAGCCGAAGTTAATGTAAATACTATGTCTCAACTCGGTTCTGGCAGTGTATCACTGGTATCCATGGCTAAGAGGACTGTTGGTAATGTGGGAGTTCAAATTGTTTGTTGGACGTACATTTTTATACATTACGCACTTCTTGTTGCCTATGTTGCTCGTTCTTCAGAAATTTTGACAAATTTTGTTGGCATTCCCTTATGGGAAAGTGCAACATTGTTTTCATTGGTTTTCGGAGGCATTTGCTACTTTGGAAGTCCGCGGTTCATTGGTGCGGTTAATGGGGTCCTGGTAATTGGAATCATCATATCTTTTGCTGCTCTTGTGGCAGTTGCAAGTGAATACCTACAATTGAGTGCACTTTTGAAAGCCAACTTCCAAGCTGTTCCCATGAGCATACCGATAATTGTTTTGTCATTTGTATACCAGAATGTAGTGCCTGTTCTTTGTACAGATCTTGAAGGAGACCTATCAAAAGTAAGGACTTCGATTGTTCTAGGCACAAGTATACCACTTATTTTATTTCTAGTCTGGAATGCCGTGATTCTAGGAACCATCACAGATGTTGAAATGGGCTCTGGTAAAATCATGGATCCATTACAACTATTGCAATCAACAAATGCTGCTGTTGGACCTATAGTTGAGGTGTTCTCAATTTTTGCTATCGCGACGTCATATATTGGATTTGTTTTGGGTCTTTGTGATTTCCTTTCTGATCTGCTGAAACTCCCGGCTGGTCAGAGCAGGCCTGTGCTGCCATACCTTTTAACGTTGATTCCACCAGTTGTGCTGTCATTGCTAGACCCAGATATATTCTTTAAAGCCTTGGACTTTGCTGGAACTTATGGAGTGTTGGTGCTGTTCGGAATAGTTCCAGCTGCAATGTCTTGGTCCGATAGGTACTCAAGTTCATCCACAGCTGTGAAATTGCCGCAGTTGGTTCCAGGAGGAAGGCTCACTCTTTCGCTTGTGGTAGGAGGTGCTGGATATATCATTTCCTCAGAAATTATTGACAAGTTGAGCAACCCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

463

Amino Acids

49.18

Weight (kDa)

5.96

Isoelectric Point (pI)

40.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Trp_Tyr_perm PF03222 71 - 447 1.3e-74 Tryptophan/tyrosine permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1034
Acc36I ACCTGC 2 cut(s) 286, 329
AccI GTMKAC 2 cut(s) 783, 868
AccII CGCG 2 cut(s) 622, 1028
AciI CCGC 4 cut(s) 620, 622, 635, 1292
AclI AACGTT 1 cut(s) 1130
AclWI GGATC 2 cut(s) 947, 960
AcsI RAATTY 4 cut(s) 75, 146, 531, 541
AcuI CTGAAG 1 cut(s) 510
AcyI GRCGYC 1 cut(s) 1031
AfaI GTAC 3 cut(s) 479, 811, 1262
AfeI AGCGCT 1 cut(s) 226
AgsI TTSAA 5 cut(s) 57, 461, 727, 821, 929
AjnI CCWGG 2 cut(s) 648, 1303
AleI CACNNNNGTG 1 cut(s) 1280
AluBI AGCT 3 cut(s) 743, 1238, 1280
AluI AGCT 3 cut(s) 743, 1238, 1280
Alw21I GWGCWC 1 cut(s) 721
Alw26I GTCTC 2 cut(s) 396, 819
Alw44I GTGCAC 1 cut(s) 717
AlwI GGATC 2 cut(s) 947, 960
Aor51HI AGCGCT 1 cut(s) 226
AoxI GGCC 2 cut(s) 306, 1106
ApaLI GTGCAC 1 cut(s) 717
ApeKI GCWGC 4 cut(s) 677, 983, 1114, 1238
ApoI RAATTY 4 cut(s) 75, 146, 531, 541
ArsI GACNNNNNNTTYG 2 cut(s) 146, 178
AspLEI GCGC 1 cut(s) 227
AspS9I GGNCC 3 cut(s) 646, 992, 1251
AsuC2I CCSGG 1 cut(s) 1091
AvaII GGWCC 3 cut(s) 646, 992, 1251
BaeGI GKGCMC 1 cut(s) 721
BaeI ACNNNNGTAYC 2 cut(s) 1252, 1285
BamHI GGATCC 1 cut(s) 952
BanII GRGCYC 1 cut(s) 938
Bbv12I GWGCWC 1 cut(s) 721
BbvI GCAGC 4 cut(s) 664, 970, 1101, 1225
BccI CCATC 1 cut(s) 923
BceAI ACGGC 1 cut(s) 884
BciT130I CCWGG 2 cut(s) 650, 1305
BciVI GTATCC 2 cut(s) 275, 433
BclI TGATCA 1 cut(s) 106
BcnI CCSGG 1 cut(s) 1091
BcoDI GTCTC 2 cut(s) 396, 819
BfaI CTAG 7 cut(s) 203, 236, 362, 857, 887, 908, 1160
BfmI CTRYAG 2 cut(s) 279, 996
BfoI RGCGCY 1 cut(s) 228
BfuAI ACCTGC 2 cut(s) 286, 329
BfuI GTATCC 2 cut(s) 275, 433
BglII AGATCT 1 cut(s) 814
BisI GCNGC 5 cut(s) 678, 984, 1115, 1239, 1292
BlsI GCNGC 5 cut(s) 679, 985, 1116, 1240, 1293
Bme1390I CCNGG 3 cut(s) 650, 1091, 1305
Bme18I GGWCC 3 cut(s) 646, 992, 1251
BmgT120I GGNCC 3 cut(s) 646, 992, 1251
BmiI GGNNCC 5 cut(s) 15, 647, 913, 954, 1302
BmrFI CCNGG 3 cut(s) 650, 1091, 1305
BplI GAGNNNNNCTC 4 cut(s) 995, 1027, 1299, 1331
BpuEI CTTGAG 1 cut(s) 1249
BpuMI CCSGG 1 cut(s) 1091
BsaHI GRCGYC 1 cut(s) 1031
BsaI GGTCTC 1 cut(s) 819
BsaJI CCNNGG 4 cut(s) 252, 426, 620, 1185
BsaXI ACNNNNNCTCC 6 cut(s) 81, 108, 111, 138, 1200, 1230
Bse1I ACTGG 2 cut(s) 423, 1142
Bse3DI GCAATG 2 cut(s) 1154, 1248
BseBI CCWGG 2 cut(s) 650, 1305
BseDI CCNNGG 4 cut(s) 252, 426, 620, 1185
BseGI GGATG 1 cut(s) 1271
BseMI GCAATG 2 cut(s) 1154, 1248
BseMII CTCAG 2 cut(s) 180, 1374
BseNI ACTGG 2 cut(s) 423, 1142
BseRI GAGGAG 6 cut(s) 6, 9, 12, 15, 18, 21
BseSI GKGCMC 1 cut(s) 721
BseXI GCAGC 4 cut(s) 664, 970, 1101, 1225
Bsh1236I CGCG 2 cut(s) 622, 1028
BshFI GGCC 2 cut(s) 308, 1108
BsiHKAI GWGCWC 1 cut(s) 721
BsiSI CCGG 1 cut(s) 1091
BslFI GGGAC 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 396, 819
BsmFI GGGAC 1 cut(s) 259
BsmI GAATGC 2 cut(s) 552, 901
BsnI GGCC 2 cut(s) 308, 1108
Bso31I GGTCTC 1 cut(s) 819
Bsp1286I GDGCHC 2 cut(s) 721, 938
Bsp1407I TGTACA 1 cut(s) 809
Bsp143I GATC 4 cut(s) 106, 814, 952, 1075
Bsp19I CCATGG 1 cut(s) 426
Bsp68I TCGCGA 1 cut(s) 1028
BspACI CCGC 4 cut(s) 620, 622, 635, 1292
BspANI GGCC 2 cut(s) 308, 1108
BspCNI CTCAG 2 cut(s) 181, 1373
BspFNI CGCG 2 cut(s) 622, 1028
BspLI GGNNCC 5 cut(s) 15, 647, 913, 954, 1302
BspMAI CTGCAG 1 cut(s) 283
BspMI ACCTGC 2 cut(s) 286, 329
BspPI GGATC 2 cut(s) 947, 960
BspQI GCTCTTC 1 cut(s) 90
BspTNI GGTCTC 1 cut(s) 819
BsrDI GCAATG 2 cut(s) 1154, 1248
BsrGI TGTACA 1 cut(s) 809
BsrI ACTGG 2 cut(s) 423, 1142
BssECI CCNNGG 4 cut(s) 252, 426, 620, 1185
BssMI GATC 4 cut(s) 106, 814, 952, 1075
BssNAI GTATAC 2 cut(s) 784, 869
BssNI GRCGYC 1 cut(s) 1031
BssT1I CCWWGG 2 cut(s) 426, 1185
Bst1107I GTATAC 2 cut(s) 784, 869
Bst2UI CCWGG 2 cut(s) 650, 1305
Bst4CI ACNGT 2 cut(s) 253, 442
Bst6I CTCTTC 2 cut(s) 90, 177
BstACI GRCGYC 1 cut(s) 1031
BstAPI GCANNNNNTGC 1 cut(s) 278
BstAUI TGTACA 1 cut(s) 809
BstC8I GCNNGC 1 cut(s) 1106
BstDEI CTNAG 3 cut(s) 189, 432, 1360
BstDSI CCRYGG 3 cut(s) 252, 426, 620
BstF5I GGATG 1 cut(s) 1271
BstFNI CGCG 2 cut(s) 622, 1028
BstH2I RGCGCY 1 cut(s) 228
BstHHI GCGC 1 cut(s) 227
BstKTI GATC 4 cut(s) 109, 817, 955, 1078
BstMAI GTCTC 2 cut(s) 396, 819
BstMBI GATC 4 cut(s) 106, 814, 952, 1075
BstMWI GCNNNNNNNGC 6 cut(s) 11, 278, 515, 686, 1114, 1156
BstNI CCWGG 2 cut(s) 650, 1305
BstSCI CCNGG 3 cut(s) 648, 1089, 1303
BstSFI CTRYAG 2 cut(s) 279, 996
BstSLI GKGCMC 1 cut(s) 721
BstUI CGCG 2 cut(s) 622, 1028
BstV1I GCAGC 4 cut(s) 664, 970, 1101, 1225
BstX2I RGATCY 2 cut(s) 814, 952
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 814, 952
BstZ17I GTATAC 2 cut(s) 784, 869
BsuI GTATCC 2 cut(s) 275, 433
BsuRI GGCC 2 cut(s) 308, 1108
BtgI CCRYGG 3 cut(s) 252, 426, 620
BtsCI GGATG 1 cut(s) 1271
BtsI GCAGTG 2 cut(s) 288, 415
BtsIMutI CAGTG 3 cut(s) 288, 415, 416
BtuMI TCGCGA 1 cut(s) 1028
BveI ACCTGC 2 cut(s) 286, 329
Cac8I GCNNGC 1 cut(s) 1106
CfoI GCGC 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 646, 992, 1251
Cfr42I CCGCGG 1 cut(s) 623
Csp6I GTAC 3 cut(s) 478, 810, 1261
CviAII CATG 4 cut(s) 343, 427, 751, 949
CviQI GTAC 3 cut(s) 478, 810, 1261
DdeI CTNAG 3 cut(s) 189, 432, 1360
DpnI GATC 4 cut(s) 108, 816, 954, 1077
DpnII GATC 4 cut(s) 106, 814, 952, 1075
DraI TTTAAA 1 cut(s) 1180
Eam1104I CTCTTC 2 cut(s) 90, 177
EarI CTCTTC 2 cut(s) 90, 177
Eco130I CCWWGG 2 cut(s) 426, 1185
Eco147I AGGCCT 1 cut(s) 1108
Eco24I GRGCYC 1 cut(s) 938
Eco31I GGTCTC 1 cut(s) 819
Eco47I GGWCC 3 cut(s) 646, 992, 1251
Eco47III AGCGCT 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 510
EcoO109I RGGNCCY 1 cut(s) 646
EcoRII CCWGG 2 cut(s) 648, 1303
EcoT14I CCWWGG 2 cut(s) 426, 1185
EcoT38I GRGCYC 1 cut(s) 938
ErhI CCWWGG 2 cut(s) 426, 1185
FaeI CATG 4 cut(s) 346, 430, 754, 952
FaqI GGGAC 1 cut(s) 259
FatI CATG 4 cut(s) 342, 426, 750, 948
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 2 cut(s) 783, 868
Fnu4HI GCNGC 5 cut(s) 678, 984, 1115, 1239, 1292
FokI GGATG 1 cut(s) 1258
FriOI GRGCYC 1 cut(s) 938
Fsp4HI GCNGC 5 cut(s) 678, 984, 1115, 1239, 1292
FspBI CTAG 7 cut(s) 203, 236, 362, 857, 887, 908, 1160
GlaI GCGC 1 cut(s) 226
GluI GCNGC 5 cut(s) 678, 984, 1115, 1239, 1292
HaeII RGCGCY 1 cut(s) 228
HaeIII GGCC 2 cut(s) 308, 1108
HapII CCGG 1 cut(s) 1091
HhaI GCGC 1 cut(s) 227
Hin1I GRCGYC 1 cut(s) 1031
Hin1II CATG 4 cut(s) 346, 430, 754, 952
Hin6I GCGC 1 cut(s) 225
HinP1I GCGC 1 cut(s) 225
HinfI GANTC 4 cut(s) 293, 660, 904, 1135
HpaII CCGG 1 cut(s) 1091
Hpy166II GTNNAC 3 cut(s) 719, 784, 869
Hpy188I TCNGA 8 cut(s) 181, 529, 596, 1075, 1101, 1226, 1255, 1363
Hpy188III TCNNGA 5 cut(s) 57, 297, 818, 892, 1027
Hpy8I GTNNAC 3 cut(s) 719, 784, 869
Hpy99I CGWCG 1 cut(s) 1033
HpyAV CCTTC 2 cut(s) 815, 1305
HpyCH4III ACNGT 2 cut(s) 253, 442
HpyCH4IV ACGT 3 cut(s) 476, 1031, 1130
HpyF10VI GCNNNNNNNGC 6 cut(s) 11, 278, 515, 686, 1114, 1156
HpyF3I CTNAG 3 cut(s) 189, 432, 1360
HpySE526I ACGT 3 cut(s) 476, 1031, 1130
Hsp92I GRCGYC 1 cut(s) 1031
Hsp92II CATG 4 cut(s) 346, 430, 754, 952
HspAI GCGC 1 cut(s) 225
Ksp22I TGATCA 1 cut(s) 106
KspI CCGCGG 1 cut(s) 623
Kzo9I GATC 4 cut(s) 106, 814, 952, 1075
LguI GCTCTTC 1 cut(s) 90
LmnI GCTCC 1 cut(s) 19
Lsp1109I GCAGC 4 cut(s) 664, 970, 1101, 1225
MaeI CTAG 7 cut(s) 203, 236, 362, 857, 887, 908, 1160
MaeII ACGT 3 cut(s) 476, 1031, 1130
MaeIII GTNAC 2 cut(s) 283, 349
MalI GATC 4 cut(s) 108, 816, 954, 1077
MboI GATC 4 cut(s) 106, 814, 952, 1075
MboII GAAGA 5 cut(s) 45, 77, 181, 194, 516
MfeI CAATTG 1 cut(s) 710
MflI RGATCY 2 cut(s) 814, 952
MhlI GDGCHC 2 cut(s) 721, 938
MlyI GAGTC 1 cut(s) 287
MmeI TCCRAC 4 cut(s) 124, 174, 452, 970
MseI TTAA 4 cut(s) 375, 639, 1127, 1179
MslI CAYNNNNRTG 1 cut(s) 1280
MspA1I CMGCKG 3 cut(s) 622, 1238, 1280
MspI CCGG 1 cut(s) 1091
MspR9I CCNGG 3 cut(s) 650, 1091, 1305
MunI CAATTG 1 cut(s) 710
Mva1269I GAATGC 2 cut(s) 552, 901
MvaI CCWGG 2 cut(s) 650, 1305
MvnI CGCG 2 cut(s) 622, 1028
MwoI GCNNNNNNNGC 6 cut(s) 11, 278, 515, 686, 1114, 1156
NciI CCSGG 1 cut(s) 1091
NcoI CCATGG 1 cut(s) 426
NdeII GATC 4 cut(s) 106, 814, 952, 1075
NlaIII CATG 4 cut(s) 346, 430, 754, 952
NlaIV GGNNCC 5 cut(s) 15, 647, 913, 954, 1302
NmuCI GTSAC 1 cut(s) 283
NruI TCGCGA 1 cut(s) 1028
OliI CACNNNNGTG 1 cut(s) 1280
PceI AGGCCT 1 cut(s) 1108
PciSI GCTCTTC 1 cut(s) 90
PctI GAATGC 2 cut(s) 552, 901
PfeI GAWTC 3 cut(s) 660, 904, 1135
PfoI TCCNGGA 1 cut(s) 1303
PkrI GCNGC 5 cut(s) 679, 985, 1116, 1240, 1293
PleI GAGTC 1 cut(s) 287
PpsI GAGTC 1 cut(s) 287
PpuMI RGGWCCY 1 cut(s) 646
Psp1406I AACGTT 1 cut(s) 1130
Psp5II RGGWCCY 1 cut(s) 646
Psp6I CCWGG 2 cut(s) 648, 1303
PspGI CCWGG 2 cut(s) 648, 1303
PspN4I GGNNCC 5 cut(s) 15, 647, 913, 954, 1302
PspPI GGNCC 3 cut(s) 646, 992, 1251
PspPPI RGGWCCY 1 cut(s) 646
PsrI GAACNNNNNNTAC 2 cut(s) 786, 818
PstI CTGCAG 1 cut(s) 283
PsuI RGATCY 2 cut(s) 814, 952
PvuII CAGCTG 2 cut(s) 1238, 1280
RruI TCGCGA 1 cut(s) 1028
RsaI GTAC 3 cut(s) 479, 811, 1262
RsaNI GTAC 3 cut(s) 478, 810, 1261
RseI CAYNNNNRTG 1 cut(s) 1280
SacII CCGCGG 1 cut(s) 623
SapI GCTCTTC 1 cut(s) 90
SaqAI TTAA 4 cut(s) 375, 639, 1127, 1179
SatI GCNGC 5 cut(s) 678, 984, 1115, 1239, 1292
Sau3AI GATC 4 cut(s) 106, 814, 952, 1075
Sau96I GGNCC 3 cut(s) 646, 992, 1251
SchI GAGTC 1 cut(s) 287
ScrFI CCNGG 3 cut(s) 650, 1091, 1305
SduI GDGCHC 2 cut(s) 721, 938
SfcI CTRYAG 2 cut(s) 279, 996
Sfr303I CCGCGG 1 cut(s) 623
SgrBI CCGCGG 1 cut(s) 623
SinI GGWCC 3 cut(s) 646, 992, 1251
SmiMI CAYNNNNRTG 1 cut(s) 1280
SmlI CTYRAG 1 cut(s) 1264
SmoI CTYRAG 1 cut(s) 1264
SseBI AGGCCT 1 cut(s) 1108
SsiI CCGC 4 cut(s) 620, 622, 635, 1292
SspMI CTAG 7 cut(s) 203, 236, 362, 857, 887, 908, 1160
StuI AGGCCT 1 cut(s) 1108
StyD4I CCNGG 3 cut(s) 648, 1089, 1303
StyI CCWWGG 2 cut(s) 426, 1185
TaaI ACNGT 2 cut(s) 253, 442
TaiI ACGT 3 cut(s) 479, 1034, 1133
TaqI TCGA 1 cut(s) 848
TatI WGTACW 1 cut(s) 809
TauI GCSGC 1 cut(s) 1294
TfiI GAWTC 3 cut(s) 660, 904, 1135
Tru1I TTAA 4 cut(s) 375, 639, 1127, 1179
Tru9I TTAA 4 cut(s) 375, 639, 1127, 1179
TscAI CASTG 3 cut(s) 288, 415, 423
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 4 cut(s) 677, 983, 1114, 1238
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 573, 616, 1260
TspRI CASTG 3 cut(s) 288, 415, 423
VneI GTGCAC 1 cut(s) 717
VpaK11BI GGWCC 3 cut(s) 646, 992, 1251
XapI RAATTY 4 cut(s) 75, 146, 531, 541
XmiI GTMKAC 2 cut(s) 783, 868
XspI CTAG 7 cut(s) 203, 236, 362, 857, 887, 908, 1160
ZraI GACGTC 1 cut(s) 1032
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.