Rorug05G0258900

Tryptophan/tyrosine permease family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004761
Physical Location & Seq
Forward (+)
29079331 .. 29080976
1646 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0258900.1

Sequence Viewer

Length: 405 bp
ATGGCGGGTCGAGGCAAAGCTTTGGGATCTGGGGCGGCCAAGAAGGCCACGTCGCGGTCCAGCAAGGCCGGTCTTCAATTTCCCGTGGGGCGTATTGCTCGGTTCTTGAAGGCAGGGAAGTACGCCGAGCGAGTCGGTGCCGGAGCTCCGGTCTACCTTGCCGCCGTGCTTGAATACCTAGCCGCTGAGGTTCTGGAATTGGCTGGTAATGCGGCAAGAGACAACAAGAAGACTCGAATTGTGCCACGCCACATTCAGCTTGCTGTGCGAAATGATGAGGAGCTCAGCAAGCTTCTTGGAGATGTCACAATTGCAAATGGCGGTGTCATGCCCAACATTCACAACCTTCTGCTCCCAAAGAAGGCCGGTGGTTCCTCCAAGGCCGCAGCTGGTGATGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Trp_Tyr_perm

Protein Analysis

134

Amino Acids

13.86

Weight (kDa)

10.05

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Histone PF00125 14 - 90 4.4e-14 Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C PF16211 93 - 127 9.7e-19 C-terminus of histone H2A
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 55
AciI CCGC 8 cut(s) 5, 35, 55, 162, 183, 212, 321, 384
AclWI GGATC 1 cut(s) 34
AcoI YGGCCR 1 cut(s) 36
AfaI GTAC 1 cut(s) 122
AfiI CCNNNNNNNGG 2 cut(s) 54, 361
AgsI TTSAA 3 cut(s) 77, 109, 173
AjiI CACGTC 1 cut(s) 51
AluBI AGCT 6 cut(s) 20, 146, 259, 283, 292, 389
AluI AGCT 6 cut(s) 20, 146, 259, 283, 292, 389
Alw21I GWGCWC 2 cut(s) 148, 285
Alw26I GTCTC 1 cut(s) 213
AlwI GGATC 1 cut(s) 34
AoxI GGCC 5 cut(s) 36, 45, 66, 363, 381
ApeKI GCWGC 1 cut(s) 386
AspS9I GGNCC 1 cut(s) 57
AsuHPI GGTGA 1 cut(s) 404
AvaII GGWCC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 137
BanII GRGCYC 2 cut(s) 148, 285
BbsI GAAGAC 2 cut(s) 65, 236
Bbv12I GWGCWC 2 cut(s) 148, 285
BbvCI CCTCAGC 1 cut(s) 186
BbvI GCAGC 1 cut(s) 398
BceAI ACGGC 1 cut(s) 149
BcoDI GTCTC 1 cut(s) 213
BfaI CTAG 1 cut(s) 179
BglI GCCNNNNNGGC 1 cut(s) 44
BisI GCNGC 6 cut(s) 36, 162, 183, 213, 384, 387
BlpI GCTNAGC 1 cut(s) 284
BlsI GCNGC 6 cut(s) 37, 163, 184, 214, 385, 388
Bme18I GGWCC 1 cut(s) 57
BmgBI CACGTC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 57
BmiI GGNNCC 2 cut(s) 139, 373
BpiI GAAGAC 2 cut(s) 65, 236
Bpu10I CCTNAGC 1 cut(s) 186
Bpu1102I GCTNAGC 1 cut(s) 284
BsaJI CCNNGG 2 cut(s) 84, 378
BsaWI WCCGGW 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 361
Bse118I RCCGGY 2 cut(s) 68, 365
BseDI CCNNGG 2 cut(s) 84, 378
BseLI CCNNNNNNNGG 2 cut(s) 54, 361
BseMII CTCAG 2 cut(s) 177, 298
BseRI GAGGAG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 398
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 5 cut(s) 38, 47, 68, 365, 383
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 2 cut(s) 148, 285
BsiSI CCGG 4 cut(s) 69, 141, 149, 366
BslI CCNNNNNNNGG 2 cut(s) 54, 361
BsmAI GTCTC 1 cut(s) 213
BsnI GGCC 5 cut(s) 38, 47, 68, 365, 383
Bsp1286I GDGCHC 2 cut(s) 148, 285
Bsp143I GATC 1 cut(s) 26
Bsp1720I GCTNAGC 1 cut(s) 284
BspACI CCGC 8 cut(s) 5, 35, 55, 162, 183, 212, 321, 384
BspANI GGCC 5 cut(s) 38, 47, 68, 365, 383
BspCNI CTCAG 2 cut(s) 178, 297
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 2 cut(s) 139, 373
BspPI GGATC 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 137
BsrFI RCCGGY 2 cut(s) 68, 365
BssAI RCCGGY 2 cut(s) 68, 365
BssECI CCNNGG 2 cut(s) 84, 378
BssMI GATC 1 cut(s) 26
BssT1I CCWWGG 1 cut(s) 378
BstC8I GCNNGC 2 cut(s) 261, 290
BstDEI CTNAG 2 cut(s) 186, 284
BstDSI CCRYGG 1 cut(s) 84
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 1 cut(s) 29
BstMAI GTCTC 1 cut(s) 213
BstMBI GATC 1 cut(s) 26
BstMWI GCNNNNNNNGC 4 cut(s) 44, 209, 265, 289
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 1 cut(s) 398
BstV2I GAAGAC 2 cut(s) 65, 236
BstX2I RGATCY 1 cut(s) 26
BstYI RGATCY 1 cut(s) 26
BsuRI GGCC 5 cut(s) 38, 47, 68, 365, 383
BtgI CCRYGG 1 cut(s) 84
BtrI CACGTC 1 cut(s) 51
Cac8I GCNNGC 2 cut(s) 261, 290
Cfr10I RCCGGY 2 cut(s) 68, 365
Cfr13I GGNCC 1 cut(s) 57
Csp6I GTAC 1 cut(s) 121
CviAII CATG 1 cut(s) 328
CviQI GTAC 1 cut(s) 121
DdeI CTNAG 2 cut(s) 186, 284
DpnI GATC 1 cut(s) 28
DpnII GATC 1 cut(s) 26
EaeI YGGCCR 1 cut(s) 36
Ecl136II GAGCTC 2 cut(s) 146, 283
Eco130I CCWWGG 1 cut(s) 378
Eco24I GRGCYC 2 cut(s) 148, 285
Eco47I GGWCC 1 cut(s) 57
Eco53kI GAGCTC 2 cut(s) 146, 283
EcoICRI GAGCTC 2 cut(s) 146, 283
EcoT14I CCWWGG 1 cut(s) 378
EcoT38I GRGCYC 2 cut(s) 148, 285
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 1 cut(s) 331
FaiI YATR 1 cut(s) 329
FatI CATG 1 cut(s) 327
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 36, 162, 183, 213, 384, 387
FriOI GRGCYC 2 cut(s) 148, 285
Fsp4HI GCNGC 6 cut(s) 36, 162, 183, 213, 384, 387
FspBI CTAG 1 cut(s) 179
GluI GCNGC 6 cut(s) 36, 162, 183, 213, 384, 387
HaeIII GGCC 5 cut(s) 38, 47, 68, 365, 383
HapII CCGG 4 cut(s) 69, 141, 149, 366
Hin1II CATG 1 cut(s) 331
HindIII AAGCTT 2 cut(s) 18, 290
HinfI GANTC 2 cut(s) 132, 232
HpaII CCGG 4 cut(s) 69, 141, 149, 366
HphI GGTGA 1 cut(s) 404
Hpy166II GTNNAC 1 cut(s) 154
Hpy188III TCNNGA 2 cut(s) 106, 194
Hpy8I GTNNAC 1 cut(s) 154
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 4 cut(s) 37, 103, 355, 356
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 4 cut(s) 44, 209, 265, 289
HpyF3I CTNAG 2 cut(s) 186, 284
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 1 cut(s) 331
Kzo9I GATC 1 cut(s) 26
LmnI GCTCC 4 cut(s) 143, 151, 280, 357
Lsp1109I GCAGC 1 cut(s) 398
MaeI CTAG 1 cut(s) 179
MaeII ACGT 1 cut(s) 50
MaeIII GTNAC 1 cut(s) 304
MalI GATC 1 cut(s) 28
MboI GATC 1 cut(s) 26
MboII GAAGA 2 cut(s) 65, 241
MfeI CAATTG 1 cut(s) 309
MflI RGATCY 1 cut(s) 26
MhlI GDGCHC 2 cut(s) 148, 285
MluCI AATT 4 cut(s) 77, 197, 237, 309
MlyI GAGTC 2 cut(s) 141, 226
MnlI CCTC 4 cut(s) 5, 181, 271, 385
MspA1I CMGCKG 2 cut(s) 185, 389
MspI CCGG 4 cut(s) 69, 141, 149, 366
MunI CAATTG 1 cut(s) 309
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 4 cut(s) 44, 209, 265, 289
NdeII GATC 1 cut(s) 26
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 2 cut(s) 139, 373
NmeAIII GCCGAG 1 cut(s) 151
NmuCI GTSAC 1 cut(s) 304
PkrI GCNGC 6 cut(s) 37, 163, 184, 214, 385, 388
PleI GAGTC 2 cut(s) 140, 226
PpsI GAGTC 2 cut(s) 140, 226
Psp124BI GAGCTC 2 cut(s) 148, 285
PspN4I GGNNCC 2 cut(s) 139, 373
PspPI GGNCC 1 cut(s) 57
PsuI RGATCY 1 cut(s) 26
PvuII CAGCTG 1 cut(s) 389
RsaI GTAC 1 cut(s) 122
RsaNI GTAC 1 cut(s) 121
SacI GAGCTC 2 cut(s) 148, 285
SatI GCNGC 6 cut(s) 36, 162, 183, 213, 384, 387
Sau3AI GATC 1 cut(s) 26
Sau96I GGNCC 1 cut(s) 57
SchI GAGTC 2 cut(s) 141, 226
SduI GDGCHC 2 cut(s) 148, 285
SfiI GGCCNNNNNGGCC 1 cut(s) 44
SinI GGWCC 1 cut(s) 57
Sse9I AATT 4 cut(s) 77, 197, 237, 309
SsiI CCGC 8 cut(s) 5, 35, 55, 162, 183, 212, 321, 384
SspMI CTAG 1 cut(s) 179
SstI GAGCTC 2 cut(s) 148, 285
StyI CCWWGG 1 cut(s) 378
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 10, 235
TasI AATT 4 cut(s) 77, 197, 237, 309
TauI GCSGC 5 cut(s) 38, 164, 185, 215, 386
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 1 cut(s) 386
Tsp45I GTSAC 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 153
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.