Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Forward (+)

20784443 .. 20786882

Gene Structure 2440 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g27740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

ATGGCTTCCGGCACCCCCGACCTCACCAAAACCCCTAAACGCCGCTCCAGCACATCTCGAAAGGTCCGGCTCTTCGCGAAGATCGGCAACGCCGCTGATCCGGATGCCGAGGTTTCCGGTGAGGTCTACCGTAAAGAGGCATATGAATTGGACTATTGCTATGAACAAAATGAGGATAATGGCCGAATTTTTTCGCGAGAAGTACAGCCTTTGATTCCAGGAATTCTCGAGGGTTGTAATGCCACTGTCATTGCTTTGGGAGCTAGAGGTAGTGGAAAGACTAGCTTAATCAGGGGTCGAGTGAGAAACCAGGACCATATTTATGATATATTGGCTCCATCACGCCCAGAAGTTTTGGTACTGGGAGACACTGAAGGAAACATTAGGCTTAAAGGACTTTCTCAGGTGCCTGTGAATTCCATGTCAGAATTCAGCAAGCTGTTTGCTAGTGGGTATGCTTCTCATAAACCAGCTCCAAAAGGACCAGTTGAACTTTCTCGTAGGTGCCACAAGGGATTGATAGTCTATGTTTCTGCCCTAAATGAGGCAGTTCTGGGCAGCGTCAAGTCTATGTTCAAAGCTTGGGAGGAACCGCTGAATACATCTGGGAGCAACATGCCATATCCTCATGATAGAGCCTCCTCATTGCAGTTGCGGCTCGAGCAAGATCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

225

Amino Acids

24.61

Weight (kDa)

8.93

Isoelectric Point (pI)

46.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	31 - 100	3.7e-10	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	11, 406, 504
AccBSI	CCGCTC	1 cut(s)	45
AccI	GTMKAC	1 cut(s)	126
AccII	CGCG	2 cut(s)	77, 196
AccIII	TCCGGA	1 cut(s)	100
AciI	CCGC	4 cut(s)	43, 93, 593, 655
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	181
AcsI	RAATTY	4 cut(s)	186, 222, 415, 428
AcuI	CTGAAG	1 cut(s)	393
AfaI	GTAC	2 cut(s)	204, 360
AfiI	CCNNNNNNNGG	2 cut(s)	136, 544
AgsI	TTSAA	2 cut(s)	491, 577
AjnI	CCWGG	2 cut(s)	217, 309
AluBI	AGCT	5 cut(s)	263, 285, 439, 473, 581
AluI	AGCT	5 cut(s)	263, 285, 439, 473, 581
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	1 cut(s)	92
Ama87I	CYCGRG	2 cut(s)	227, 659
Aor13HI	TCCGGA	1 cut(s)	100
AoxI	GGCC	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	558
ApoI	RAATTY	4 cut(s)	186, 222, 415, 428
Asp700I	GAANNNNTTC	1 cut(s)	190
AspS9I	GGNCC	3 cut(s)	64, 313, 482
AsuHPI	GGTGA	2 cut(s)	16, 131
AvaI	CYCGRG	2 cut(s)	227, 659
AvaII	GGWCC	3 cut(s)	64, 313, 482
BanI	GGYRCC	3 cut(s)	11, 406, 504
BarI	GAAGNNNNNNTAC	2 cut(s)	342, 374
BbvI	GCAGC	1 cut(s)	570
BccI	CCATC	1 cut(s)	346
BciT130I	CCWGG	2 cut(s)	219, 311
BcoDI	GTCTC	1 cut(s)	360
BfaI	CTAG	3 cut(s)	264, 282, 447
BisI	GCNGC	4 cut(s)	43, 93, 559, 656
BlsI	GCNGC	4 cut(s)	44, 94, 560, 657
Bme1390I	CCNGG	2 cut(s)	219, 311
Bme18I	GGWCC	3 cut(s)	64, 313, 482
BmeT110I	CYCGRG	2 cut(s)	227, 659
BmgT120I	GGNCC	3 cut(s)	64, 313, 482
BmiI	GGNNCC	5 cut(s)	13, 336, 408, 506, 591
BmrFI	CCNGG	2 cut(s)	219, 311
BmrI	ACTGGG	1 cut(s)	371
BmsI	GCATC	1 cut(s)	94
BmuI	ACTGGG	1 cut(s)	371
BpmI	CTGGAG	1 cut(s)	31
BsaJI	CCNNGG	1 cut(s)	108
BsaWI	WCCGGW	2 cut(s)	100, 116
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 544
Bse1I	ACTGG	2 cut(s)	366, 485
Bse3DI	GCAATG	2 cut(s)	249, 644
BseAI	TCCGGA	1 cut(s)	100
BseBI	CCWGG	2 cut(s)	219, 311
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	109
BseLI	CCNNNNNNNGG	2 cut(s)	136, 544
BseMI	GCAATG	2 cut(s)	249, 644
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	2 cut(s)	366, 485
BseRI	GAGGAG	1 cut(s)	631
BseXI	GCAGC	1 cut(s)	570
Bsh1236I	CGCG	2 cut(s)	77, 196
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	3 cut(s)	11, 406, 504
BsiHKCI	CYCGRG	2 cut(s)	227, 659
BsiSI	CCGG	4 cut(s)	9, 67, 101, 117
BslI	CCNNNNNNNGG	2 cut(s)	136, 544
BsmAI	GTCTC	1 cut(s)	360
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	2 cut(s)	227, 659
Bsp13I	TCCGGA	1 cut(s)	100
Bsp143I	GATC	3 cut(s)	81, 97, 667
Bsp68I	TCGCGA	2 cut(s)	77, 196
BspACI	CCGC	4 cut(s)	43, 93, 593, 655
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	100
BspFNI	CGCG	2 cut(s)	77, 196
BspHI	TCATGA	1 cut(s)	628
BspLI	GGNNCC	5 cut(s)	13, 336, 408, 506, 591
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	77
BspT107I	GGYRCC	3 cut(s)	11, 406, 504
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	2 cut(s)	249, 644
BsrI	ACTGG	2 cut(s)	366, 485
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	3 cut(s)	81, 97, 667
Bst2UI	CCWGG	2 cut(s)	219, 311
Bst4CI	ACNGT	2 cut(s)	131, 247
Bst6I	CTCTTC	1 cut(s)	77
BstC8I	GCNNGC	1 cut(s)	437
BstDEI	CTNAG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	542
BstF5I	GGATG	1 cut(s)	109
BstFNI	CGCG	2 cut(s)	77, 196
BstKTI	GATC	3 cut(s)	84, 100, 670
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	3 cut(s)	81, 97, 667
BstMWI	GCNNNNNNNGC	4 cut(s)	48, 260, 655, 661
BstNI	CCWGG	2 cut(s)	219, 311
BstNSI	RCATGY	1 cut(s)	619
BstSCI	CCNGG	2 cut(s)	217, 309
BstUI	CGCG	2 cut(s)	77, 196
BstV1I	GCAGC	1 cut(s)	570
BsuRI	GGCC	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	109
BtsIMutI	CAGTG	2 cut(s)	243, 369
BtuMI	TCGCGA	2 cut(s)	77, 196
Cac8I	GCNNGC	1 cut(s)	437
CciI	TCATGA	1 cut(s)	628
Cfr13I	GGNCC	3 cut(s)	64, 313, 482
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	2 cut(s)	203, 359
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
CviAII	CATG	3 cut(s)	421, 616, 629
CviQI	GTAC	2 cut(s)	203, 359
DdeI	CTNAG	1 cut(s)	402
DpnI	GATC	3 cut(s)	83, 99, 669
DpnII	GATC	3 cut(s)	81, 97, 667
EaeI	YGGCCR	1 cut(s)	181
Eam1104I	CTCTTC	1 cut(s)	77
EarI	CTCTTC	1 cut(s)	77
Eco47I	GGWCC	3 cut(s)	64, 313, 482
Eco57I	CTGAAG	1 cut(s)	393
Eco88I	CYCGRG	2 cut(s)	227, 659
EcoNI	CCTNNNNNAGG	1 cut(s)	542
EcoRI	GAATTC	3 cut(s)	222, 415, 428
EcoRII	CCWGG	2 cut(s)	217, 309
FaeI	CATG	3 cut(s)	424, 619, 632
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FatI	CATG	3 cut(s)	420, 615, 628
FauNDI	CATATG	1 cut(s)	142
FblI	GTMKAC	1 cut(s)	126
Fnu4HI	GCNGC	4 cut(s)	43, 93, 559, 656
FokI	GGATG	1 cut(s)	116
Fsp4HI	GCNGC	4 cut(s)	43, 93, 559, 656
FspBI	CTAG	3 cut(s)	264, 282, 447
GluI	GCNGC	4 cut(s)	43, 93, 559, 656
GsuI	CTGGAG	1 cut(s)	31
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	4 cut(s)	9, 67, 101, 117
HgaI	GACGC	1 cut(s)	550
Hin1II	CATG	3 cut(s)	424, 619, 632
HindIII	AAGCTT	1 cut(s)	579
HinfI	GANTC	1 cut(s)	214
HpaII	CCGG	4 cut(s)	9, 67, 101, 117
HphI	GGTGA	2 cut(s)	16, 131
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	1 cut(s)	427
Hpy188III	TCNNGA	6 cut(s)	57, 76, 101, 195, 227, 629
Hpy8I	GTNNAC	1 cut(s)	127
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	131, 247
HpyCH4V	TGCA	1 cut(s)	649
HpyF10VI	GCNNNNNNNGC	4 cut(s)	48, 260, 655, 661
HpyF3I	CTNAG	1 cut(s)	402
Hsp92II	CATG	3 cut(s)	424, 619, 632
Kpn2I	TCCGGA	1 cut(s)	100
Kzo9I	GATC	3 cut(s)	81, 97, 667
LguI	GCTCTTC	1 cut(s)	77
LmnI	GCTCC	5 cut(s)	50, 260, 340, 478, 609
Lsp1109I	GCAGC	1 cut(s)	570
LweI	GCATC	1 cut(s)	94
MaeI	CTAG	3 cut(s)	264, 282, 447
MalI	GATC	3 cut(s)	83, 99, 669
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	3 cut(s)	81, 97, 667
MboII	GAAGA	2 cut(s)	64, 91
MluCI	AATT	5 cut(s)	146, 186, 222, 415, 428
MroI	TCCGGA	1 cut(s)	100
MroXI	GAANNNNTTC	1 cut(s)	190
MseI	TTAA	2 cut(s)	287, 390
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	2 cut(s)	95, 595
MspI	CCGG	4 cut(s)	9, 67, 101, 117
MspR9I	CCNGG	2 cut(s)	219, 311
MvaI	CCWGG	2 cut(s)	219, 311
MvnI	CGCG	2 cut(s)	77, 196
MwoI	GCNNNNNNNGC	4 cut(s)	48, 260, 655, 661
NdeI	CATATG	1 cut(s)	142
NdeII	GATC	3 cut(s)	81, 97, 667
NlaIII	CATG	3 cut(s)	424, 619, 632
NlaIV	GGNNCC	5 cut(s)	13, 336, 408, 506, 591
NmeAIII	GCCGAG	1 cut(s)	133
NruI	TCGCGA	2 cut(s)	77, 196
NspI	RCATGY	1 cut(s)	619
PaeR7I	CTCGAG	2 cut(s)	227, 659
PagI	TCATGA	1 cut(s)	628
PciSI	GCTCTTC	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	190
PfeI	GAWTC	1 cut(s)	214
PfoI	TCCNGGA	1 cut(s)	217
PkrI	GCNGC	4 cut(s)	44, 94, 560, 657
Psp6I	CCWGG	2 cut(s)	217, 309
PspGI	CCWGG	2 cut(s)	217, 309
PspN4I	GGNNCC	5 cut(s)	13, 336, 408, 506, 591
PspPI	GGNCC	3 cut(s)	64, 313, 482
PspXI	VCTCGAGB	1 cut(s)	659
RruI	TCGCGA	2 cut(s)	77, 196
RsaI	GTAC	2 cut(s)	204, 360
RsaNI	GTAC	2 cut(s)	203, 359
RseI	CAYNNNNRTG	1 cut(s)	321
SapI	GCTCTTC	1 cut(s)	77
SaqAI	TTAA	2 cut(s)	287, 390
SatI	GCNGC	4 cut(s)	43, 93, 559, 656
Sau3AI	GATC	3 cut(s)	81, 97, 667
Sau96I	GGNCC	3 cut(s)	64, 313, 482
ScrFI	CCNGG	2 cut(s)	219, 311
SfaNI	GCATC	1 cut(s)	94
Sfr274I	CTCGAG	2 cut(s)	227, 659
SinI	GGWCC	3 cut(s)	64, 313, 482
SlaI	CTCGAG	2 cut(s)	227, 659
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	227, 659
SmoI	CTYRAG	2 cut(s)	227, 659
Sse9I	AATT	5 cut(s)	146, 186, 222, 415, 428
SsiI	CCGC	4 cut(s)	43, 93, 593, 655
SspMI	CTAG	3 cut(s)	264, 282, 447
StyD4I	CCNGG	2 cut(s)	217, 309
TaaI	ACNGT	2 cut(s)	131, 247
TaqI	TCGA	4 cut(s)	58, 228, 298, 660
TasI	AATT	5 cut(s)	146, 186, 222, 415, 428
TatI	WGTACW	1 cut(s)	202
TauI	GCSGC	3 cut(s)	45, 95, 658
TfiI	GAWTC	1 cut(s)	214
Tru1I	TTAA	2 cut(s)	287, 390
Tru9I	TTAA	2 cut(s)	287, 390
TscAI	CASTG	2 cut(s)	250, 376
TseI	GCWGC	1 cut(s)	558
TspDTI	ATGAA	2 cut(s)	159, 177
TspRI	CASTG	2 cut(s)	250, 376
VpaK11BI	GGWCC	3 cut(s)	64, 313, 482
XagI	CCTNNNNNAGG	1 cut(s)	542
XapI	RAATTY	4 cut(s)	186, 222, 415, 428
XceI	RCATGY	1 cut(s)	619
XhoI	CTCGAG	2 cut(s)	227, 659
XmiI	GTMKAC	1 cut(s)	126
XmnI	GAANNNNTTC	1 cut(s)	190
XspI	CTAG	3 cut(s)	264, 282, 447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.