Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

48199181 .. 48201554

Gene Structure 2374 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0377300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGCTTCTAAGGAGCTCTTCAACACCAATCTTGAACTCATGGCTCTCCCACTGCAAAGACCCCCAACCAGAGCCAGAACCAGTTCTCAATCTTCCTAGAACCAGGTCAATCAACTTGTCATCTTCTCTTCACTCCCCGACCTTTGACCCAACAAAGAAAGCAACCCAATTCCTAGTCGAATCAGACCAACAAACCTCACCAGTTAATCCCCAAAAGAAAACCCCCATACCTCAAATCCAGATAAAGAAATCTAAAAACAGAGCCAAAGAAGGTTTGGAACAAGAAGAGGAACTAAAACCCATTACCATATCATCATCATCTTCAACCCAACGGCTGTTTTCAAGCTCTGGATTGGGTGGGAAACTCGTGGATGACGAAGCTTGTGGTGCAGAGAAGAAGGAGTGTGTGTTGCAGACACTGACGGTGGGTGGTGGTTTGGGAAATAATGGCGGTAAGATCTGTGGTGGTGGTGGAGGGAGGAAAGAATCGGACGGTGGAGATGAGTCTGGCTTCTCTGAGAGTAACAATAACAATGGGATTAATAATACTGATGCTTATTACCAGAAAATGATTCAAGCAGACCCCAGCAATCCACTCTTACTTAGCAACTATGCAAAGTTTCTAAAAGAGGTCCGAGGAGACCATGATAAAGCGGAGGAGTACTGTGAGAGAGCAATTTTGGCTAATCCGAATGATGGCGATGTTTTGTCAACATATGCTGCTCTCATATGGAACACACAGAAGGATGCTCAACGAGCGGAGAATTATTTTGATCAAGCTGTTAAAGCTTCCCCTGATGATAGTTATGTCCTGGCTTCGTATGCTGGATTCCTGTGGGATGCTGAAGAAGATGAAGAAGAAGATGAAGGAAATGAAAGGGTTCAACATGGAACTGATCAAAGCCACACATCTTCATCCAATTTCTACCACGGATCTCATCAGCAATCTCCTATAATTGCAGCTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

322

Amino Acids

35.09

Weight (kDa)

4.89

Isoelectric Point (pI)

55.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_TmcB	PF25474	179 - 226	1.6e-06	TmcB, TPR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	758
AciI	CCGC	3 cut(s)	450, 653, 758
AclWI	GGATC	1 cut(s)	940
AcuI	CTGAAG	1 cut(s)	864
AfaI	GTAC	1 cut(s)	662
AfiI	CCNNNNNNNGG	1 cut(s)	695
AgsI	TTSAA	6 cut(s)	21, 34, 324, 342, 575, 884
AjnI	CCWGG	2 cut(s)	101, 810
AluBI	AGCT	6 cut(s)	15, 345, 380, 779, 788, 962
AluI	AGCT	6 cut(s)	15, 345, 380, 779, 788, 962
Alw21I	GWGCWC	1 cut(s)	17
Alw26I	GTCTC	1 cut(s)	633
AlwI	GGATC	1 cut(s)	940
AlwNI	CAGNNNCTG	1 cut(s)	418
ApeKI	GCWGC	2 cut(s)	719, 959
AseI	ATTAAT	1 cut(s)	540
Asp700I	GAANNNNTTC	2 cut(s)	81, 879
AspS9I	GGNCC	1 cut(s)	631
AsuHPI	GGTGA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	631
BanII	GRGCYC	1 cut(s)	17
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	17
BbvI	GCAGC	1 cut(s)	706
BccI	CCATC	1 cut(s)	689
BceAI	ACGGC	1 cut(s)	347
BciT130I	CCWGG	2 cut(s)	103, 812
BclI	TGATCA	2 cut(s)	772, 895
BcoDI	GTCTC	1 cut(s)	633
BfaI	CTAG	2 cut(s)	96, 173
BglII	AGATCT	1 cut(s)	456
BisI	GCNGC	2 cut(s)	720, 960
BlsI	GCNGC	2 cut(s)	721, 961
BmcAI	AGTACT	1 cut(s)	662
Bme1390I	CCNGG	2 cut(s)	103, 812
Bme18I	GGWCC	1 cut(s)	631
BmgT120I	GGNCC	1 cut(s)	631
BmrFI	CCNGG	2 cut(s)	103, 812
BmsI	GCATC	3 cut(s)	541, 736, 829
BsaI	GGTCTC	1 cut(s)	633
BsaJI	CCNNGG	2 cut(s)	634, 928
BsaXI	ACNNNNNCTCC	2 cut(s)	392, 422
Bsc4I	CCNNNNNNNGG	1 cut(s)	695
Bse1I	ACTGG	2 cut(s)	80, 200
BseBI	CCWGG	2 cut(s)	103, 812
BseDI	CCNNGG	2 cut(s)	634, 928
BseGI	GGATG	4 cut(s)	376, 751, 844, 914
BseLI	CCNNNNNNNGG	1 cut(s)	695
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	80, 200
BseRI	GAGGAG	2 cut(s)	651, 671
BseXI	GCAGC	1 cut(s)	706
BseYI	CCCAGC	1 cut(s)	584
BsgI	GTGCAG	1 cut(s)	408
BsiHKAI	GWGCWC	1 cut(s)	17
BslI	CCNNNNNNNGG	1 cut(s)	695
BsmAI	GTCTC	1 cut(s)	633
Bso31I	GGTCTC	1 cut(s)	633
Bsp1286I	GDGCHC	1 cut(s)	17
Bsp143I	GATC	4 cut(s)	456, 772, 895, 932
BspACI	CCGC	3 cut(s)	450, 653, 758
BspCNI	CTCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	940
BspQI	GCTCTTC	1 cut(s)	22
BspTNI	GGTCTC	1 cut(s)	633
BsrBI	CCGCTC	1 cut(s)	758
BsrI	ACTGG	2 cut(s)	80, 200
BssECI	CCNNGG	2 cut(s)	634, 928
BssMI	GATC	4 cut(s)	456, 772, 895, 932
BssSI	CACGAG	1 cut(s)	365
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	2 cut(s)	103, 812
Bst4CI	ACNGT	3 cut(s)	424, 494, 665
Bst6I	CTCTTC	3 cut(s)	22, 132, 279
BstDEI	CTNAG	3 cut(s)	8, 516, 602
BstDSI	CCRYGG	1 cut(s)	928
BstF5I	GGATG	4 cut(s)	376, 751, 844, 914
BstKTI	GATC	4 cut(s)	459, 775, 898, 935
BstMAI	GTCTC	1 cut(s)	633
BstMBI	GATC	4 cut(s)	456, 772, 895, 932
BstMWI	GCNNNNNNNGC	5 cut(s)	386, 680, 755, 785, 821
BstNI	CCWGG	2 cut(s)	103, 812
BstSCI	CCNGG	2 cut(s)	101, 810
BstV1I	GCAGC	1 cut(s)	706
BstX2I	RGATCY	2 cut(s)	456, 932
BstYI	RGATCY	2 cut(s)	456, 932
BtgI	CCRYGG	1 cut(s)	928
BtgZI	GCGATG	1 cut(s)	714
BtsCI	GGATG	4 cut(s)	376, 751, 844, 914
BtsI	GCAGTG	1 cut(s)	49
BtsIMutI	CAGTG	2 cut(s)	49, 416
CaiI	CAGNNNCTG	1 cut(s)	418
Cfr13I	GGNCC	1 cut(s)	631
CsiI	ACCWGGT	1 cut(s)	101
Csp6I	GTAC	1 cut(s)	661
CviAII	CATG	3 cut(s)	39, 644, 887
CviQI	GTAC	1 cut(s)	661
DdeI	CTNAG	3 cut(s)	8, 516, 602
DpnI	GATC	4 cut(s)	458, 774, 897, 934
DpnII	GATC	4 cut(s)	456, 772, 895, 932
Eam1104I	CTCTTC	3 cut(s)	22, 132, 279
EarI	CTCTTC	3 cut(s)	22, 132, 279
Ecl136II	GAGCTC	1 cut(s)	15
Eco24I	GRGCYC	1 cut(s)	17
Eco31I	GGTCTC	1 cut(s)	633
Eco47I	GGWCC	1 cut(s)	631
Eco53kI	GAGCTC	1 cut(s)	15
Eco57I	CTGAAG	1 cut(s)	864
EcoICRI	GAGCTC	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	101, 810
EcoT38I	GRGCYC	1 cut(s)	17
FaeI	CATG	3 cut(s)	42, 647, 890
FalI	AAGNNNNNCTT	1 cut(s)	33
FatI	CATG	3 cut(s)	38, 643, 886
FauNDI	CATATG	2 cut(s)	715, 728
FbaI	TGATCA	2 cut(s)	772, 895
Fnu4HI	GCNGC	2 cut(s)	720, 960
FokI	GGATG	4 cut(s)	383, 758, 851, 901
FriOI	GRGCYC	1 cut(s)	17
Fsp4HI	GCNGC	2 cut(s)	720, 960
FspBI	CTAG	2 cut(s)	96, 173
GluI	GCNGC	2 cut(s)	720, 960
GsaI	CCCAGC	1 cut(s)	588
Hin1II	CATG	3 cut(s)	42, 647, 890
HincII	GTYRAC	1 cut(s)	711
HindII	GTYRAC	1 cut(s)	711
HindIII	AAGCTT	2 cut(s)	378, 786
HinfI	GANTC	5 cut(s)	179, 485, 503, 571, 828
HphI	GGTGA	1 cut(s)	189
Hpy166II	GTNNAC	1 cut(s)	711
Hpy188I	TCNGA	5 cut(s)	184, 490, 517, 635, 690
Hpy188III	TCNNGA	3 cut(s)	31, 238, 348
Hpy8I	GTNNAC	1 cut(s)	711
HpyAV	CCTTC	4 cut(s)	263, 391, 736, 860
HpyCH4III	ACNGT	3 cut(s)	424, 494, 665
HpyCH4V	TGCA	5 cut(s)	54, 389, 412, 614, 959
HpyF10VI	GCNNNNNNNGC	5 cut(s)	386, 680, 755, 785, 821
HpyF3I	CTNAG	3 cut(s)	8, 516, 602
Hsp92II	CATG	3 cut(s)	42, 647, 890
Ksp22I	TGATCA	2 cut(s)	772, 895
Kzo9I	GATC	4 cut(s)	456, 772, 895, 932
LguI	GCTCTTC	1 cut(s)	22
LmnI	GCTCC	1 cut(s)	12
Lsp1109I	GCAGC	1 cut(s)	706
LweI	GCATC	3 cut(s)	541, 736, 829
MabI	ACCWGGT	1 cut(s)	101
MaeI	CTAG	2 cut(s)	96, 173
MaeIII	GTNAC	1 cut(s)	521
MalI	GATC	4 cut(s)	458, 774, 897, 934
MbiI	CCGCTC	1 cut(s)	758
MboI	GATC	4 cut(s)	456, 772, 895, 932
MflI	RGATCY	2 cut(s)	456, 932
MhlI	GDGCHC	1 cut(s)	17
MluCI	AATT	5 cut(s)	167, 675, 763, 919, 954
MlyI	GAGTC	1 cut(s)	512
MnlI	CCTC	8 cut(s)	205, 240, 280, 467, 471, 622, 629, 649
MroXI	GAANNNNTTC	2 cut(s)	81, 879
MseI	TTAA	4 cut(s)	204, 540, 783, 967
MspR9I	CCNGG	2 cut(s)	103, 812
MvaI	CCWGG	2 cut(s)	103, 812
MwoI	GCNNNNNNNGC	5 cut(s)	386, 680, 755, 785, 821
NdeI	CATATG	2 cut(s)	715, 728
NdeII	GATC	4 cut(s)	456, 772, 895, 932
NlaIII	CATG	3 cut(s)	42, 647, 890
PciSI	GCTCTTC	1 cut(s)	22
PcsI	WCGNNNNNNNCGW	1 cut(s)	372
PdmI	GAANNNNTTC	2 cut(s)	81, 879
PfeI	GAWTC	4 cut(s)	179, 485, 571, 828
PkrI	GCNGC	2 cut(s)	721, 961
PleI	GAGTC	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	540
Psp124BI	GAGCTC	1 cut(s)	17
Psp6I	CCWGG	2 cut(s)	101, 810
PspFI	CCCAGC	1 cut(s)	584
PspGI	CCWGG	2 cut(s)	101, 810
PspPI	GGNCC	1 cut(s)	631
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	456, 932
RsaI	GTAC	1 cut(s)	662
RsaNI	GTAC	1 cut(s)	661
SacI	GAGCTC	1 cut(s)	17
SapI	GCTCTTC	1 cut(s)	22
SaqAI	TTAA	4 cut(s)	204, 540, 783, 967
SatI	GCNGC	2 cut(s)	720, 960
Sau3AI	GATC	4 cut(s)	456, 772, 895, 932
Sau96I	GGNCC	1 cut(s)	631
ScaI	AGTACT	1 cut(s)	662
SchI	GAGTC	1 cut(s)	512
ScrFI	CCNGG	2 cut(s)	103, 812
SduI	GDGCHC	1 cut(s)	17
SexAI	ACCWGGT	1 cut(s)	101
SfaNI	GCATC	3 cut(s)	541, 736, 829
SinI	GGWCC	1 cut(s)	631
Sse9I	AATT	5 cut(s)	167, 675, 763, 919, 954
SsiI	CCGC	3 cut(s)	450, 653, 758
SspMI	CTAG	2 cut(s)	96, 173
SstI	GAGCTC	1 cut(s)	17
StyD4I	CCNGG	2 cut(s)	101, 810
TaaI	ACNGT	3 cut(s)	424, 494, 665
TaqI	TCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	167, 675, 763, 919, 954
TatI	WGTACW	1 cut(s)	660
TfiI	GAWTC	4 cut(s)	179, 485, 571, 828
Tru1I	TTAA	4 cut(s)	204, 540, 783, 967
Tru9I	TTAA	4 cut(s)	204, 540, 783, 967
TscAI	CASTG	2 cut(s)	56, 423
TseI	GCWGC	2 cut(s)	719, 959
TspDTI	ATGAA	4 cut(s)	867, 879, 888, 903
TspGWI	ACGGA	1 cut(s)	945
TspRI	CASTG	2 cut(s)	56, 423
VpaK11BI	GGWCC	1 cut(s)	631
VspI	ATTAAT	1 cut(s)	540
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XmnI	GAANNNNTTC	2 cut(s)	81, 879
XspI	CTAG	2 cut(s)	96, 173
ZrmI	AGTACT	1 cut(s)	662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.