RLG00000019998
ERF Family

Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
59845400 .. 59847545
2146 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000019998

Sequence Viewer

Length: 1980 bp
ATGGCCAAGCATTCCGGTGCGGTGTCATGGATCCAAGTGAATAAGCCCGCCGGAGAGGCTTCAGAGGCTTCGGAGGCTTCGGAGAGTGCCACTCTCTCCTTAAGAGACCAATCAGCAAGCCGGAAAGAGTCCTATGACTTGGTCTATTGCCATGAACAAAATGAGGATAACGGCCTGATTTTTTCGCGAGAAGTAAAGCCTTTAATTCCTGGAATTCTTGAGGGTTGTAATGCTACTGTCATTGCTTTGGGAGCTAGAGGTACTGGAAAGACTAGCTTACTTCAGGCTTCGAGTGAGAAACCAGGTTTGGCAACACTGGCAATCGATGAATTTATTTCAATTGTTGAGAAAAATGACTATTCAATTACTATATCCTCGTATGAGGTTTATCAGGACCACATTTATGATATATTGGCTCCATCACGCCCCGAAGTTTTGGTACTAGGAGACACTCAAGGAAACATTCAGCTTAAAGGACTTTCTCAGGTGTATGTGAAGTCCATGTCAGAATTCAGCAAACGGTATGTTAGTGGGTGTTCTTCCCATAAACCAGCACCAAAGGGACCAGCTGAACTTCTTGTAGCATGTTATGAAGATACAAGAAGGAAGACCATTGATTGTGGTAATCATGTTGAAAGCAGAAAAATCAATAATTCCAATGGAAACCATGTGCCTTATCGGAAAAGCAAACTCACACACTTATTGCAAGACTCCCTGGGAGGGATGAGTAGAGTTTTGATGATCATTTGCTTGAAACCATCATTTTGCCAAGATTCCATTTACATGGTAAGCTTGGTGTCTCGCTCTTCTCAAAACACCAATCAGGCTGTCACAGGCTCAACAAAGAAAAGTAAAGGTCTGACAAGATCAGAAGTGCGTTCATCACATAAGGTCTATATATCCATGACAACTTATTCTATAGCAAAGAAACAAACAGTCTCCCGAGTGCCTCTTTCTGAGAAGAAAGTTAATGGGCCTCTTTCTTGCAAGAAAGCAAATAGTAGTCCGACTTCTGCATTGAAAGGAAGGAAACTATTTGATGAAAGAAGACATTTGACCAAATCGATGGAGGCAAGTGCTATCTTAGGTACTGTCACAACAATTGAAACTTCTGTAGTTGAGAAGGAAGATACCATTTCAAATGTTATTGAAGGAACCGAGCAACTTAAAATTGAGAATCCATCATCAAATGCTTTGAATTCCATAGCACCTACCTCTATCTTGGAAAAGGACGAGTTATTATCAGATGATCCAAAGCATGCAGAACATTCTTTAAATGAAGAAAAGGAGTATTTACTAGTGGATGATCCAAAGCATGCAGTAGATACTTCAATTGTAGAAAAGGATGTTTCTGTGAATGGTGATGGCCCTACTGAGGAAGTTAATCCTAGTGACAATAGCAGTAGCAAATATGCATTGGCTTTAGTTGAAGAAGTTAATGACATCGAGAAGGAAAGCAATAATTTCCCAGACAATGAAGATGCATCACCTCCAATCAGTGCACGATTACAAGAATTGGCATTAAAAATGAAATCGATCTTTTTGTTCTTCCACTCCATTGTGCTTAAAGATGCCAGAGGAGAAAGATACTTCGCCAATAACTTCCTCTGTACTGACAGCATGGAACCAAACGCCCCAGTTGCAAATGTTAACAACATCGCGGAACCAAAGACCCCAGTTGCCAATCAGGTTATAAAACACAATGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGTAGTACTGGTGTCAAGCAATCTCTTGTTCAAGATTATCTTAGCTTCTTAAACACCGCTAGCAAAGAAGATTTGAAAAGATTAAAGGGAATTGGAGAGAAAAGAGCAAAATGTATGCTTGATTGCCGTGAAGAAACTCCTGAGCCCTTCAAGAGTCTTGATGATTTACAAGACATTGAACTTTCAGTGAAGCAGATTAAGAACTTGATGAAGAAAGCAGGAGGAGGGCTATTCGATTAG

Protein Analysis

660

Amino Acids

72.27

Weight (kDa)

5.97

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Kinesin PF00225 25 - 180 3.6e-22 Kinesin motor domain
Microtub_bd PF16796 32 - 138 1.7e-07 Microtubule binding
Kinesin PF00225 217 - 254 2.3e-11 Kinesin motor domain
HHH_3 PF12836 597 - 639 2.8e-07 Helix-hairpin-helix motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1694
AccII CGCG 2 cut(s) 187, 1661
AciI CCGC 4 cut(s) 20, 48, 1661, 1797
AclI AACGTT 1 cut(s) 1730
AclWI GGATC 4 cut(s) 25, 38, 1244, 1301
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 4 cut(s) 213, 329, 509, 1198
AcuI CTGAAG 2 cut(s) 45, 266
AfaI GTAC 5 cut(s) 262, 441, 1090, 1612, 1747
AfiI CCNNNNNNNGG 2 cut(s) 720, 1375
AflII CTTAAG 1 cut(s) 100
AhlI ACTAGT 1 cut(s) 1297
AjnI CCWGG 3 cut(s) 208, 301, 714
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AluBI AGCT 6 cut(s) 254, 276, 469, 569, 792, 1785
AluI AGCT 6 cut(s) 254, 276, 469, 569, 792, 1785
Alw21I GWGCWC 1 cut(s) 1504
Alw26I GTCTC 4 cut(s) 99, 441, 804, 943
Alw44I GTGCAC 1 cut(s) 1500
AlwI GGATC 4 cut(s) 25, 38, 1244, 1301
Ama87I CYCGRG 1 cut(s) 942
AoxI GGCC 4 cut(s) 3, 172, 974, 1366
ApaLI GTGCAC 1 cut(s) 1500
ApoI RAATTY 4 cut(s) 213, 329, 509, 1198
AspS9I GGNCC 4 cut(s) 394, 563, 974, 1367
AsuHPI GGTGA 2 cut(s) 1373, 1479
AsuNHI GCTAGC 1 cut(s) 1799
AvaI CYCGRG 1 cut(s) 942
AvaII GGWCC 2 cut(s) 394, 563
BaeGI GKGCMC 1 cut(s) 1504
BalI TGGCCA 1 cut(s) 5
BamHI GGATCC 1 cut(s) 30
BanII GRGCYC 1 cut(s) 1887
BarI GAAGNNNNNNTAC 4 cut(s) 423, 455, 994, 1026
BbsI GAAGAC 2 cut(s) 614, 1054
Bbv12I GWGCWC 1 cut(s) 1504
BccI CCATC 5 cut(s) 427, 766, 1060, 1189, 1358
BceAI ACGGC 2 cut(s) 187, 1851
BciT130I CCWGG 3 cut(s) 210, 303, 716
BclI TGATCA 1 cut(s) 741
BcoDI GTCTC 4 cut(s) 99, 441, 804, 943
BcuI ACTAGT 1 cut(s) 1297
BfaI CTAG 6 cut(s) 255, 273, 443, 1298, 1389, 1800
BfmI CTRYAG 3 cut(s) 918, 1113, 1741
BfrI CTTAAG 1 cut(s) 100
BglI GCCNNNNNGGC 1 cut(s) 56
BmcAI AGTACT 1 cut(s) 1747
Bme1390I CCNGG 3 cut(s) 210, 303, 716
Bme18I GGWCC 2 cut(s) 394, 563
BmeT110I CYCGRG 1 cut(s) 942
BmgT120I GGNCC 4 cut(s) 394, 563, 974, 1367
BmiI GGNNCC 6 cut(s) 32, 417, 564, 1156, 1626, 1665
BmrFI CCNGG 3 cut(s) 210, 303, 716
BmrI ACTGGG 2 cut(s) 1631, 1670
BmsI GCATC 3 cut(s) 1471, 1493, 1561
BmtI GCTAGC 1 cut(s) 1803
BmuI ACTGGG 2 cut(s) 1631, 1670
BpiI GAAGAC 2 cut(s) 614, 1054
BplI GAGNNNNNCTC 2 cut(s) 76, 108
Bpu10I CCTNAGC 1 cut(s) 1881
BpuEI CTTGAG 2 cut(s) 239, 438
Bsa29I ATCGAT 3 cut(s) 324, 1064, 1535
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 3 cut(s) 714, 715, 1721
BsaWI WCCGGW 1 cut(s) 14
Bsc4I CCNNNNNNNGG 2 cut(s) 720, 1375
Bse1I ACTGG 5 cut(s) 268, 321, 1637, 1676, 1753
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 3 cut(s) 210, 303, 716
BseCI ATCGAT 3 cut(s) 324, 1064, 1535
BseDI CCNNGG 3 cut(s) 714, 715, 1721
BseGI GGATG 3 cut(s) 729, 1309, 1351
BseLI CCNNNNNNNGG 2 cut(s) 720, 1375
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 4 cut(s) 497, 948, 1365, 1872
BseNI ACTGG 5 cut(s) 268, 321, 1637, 1676, 1753
BseRI GAGGAG 2 cut(s) 1593, 1977
BseSI GKGCMC 1 cut(s) 1504
Bsh1236I CGCG 2 cut(s) 187, 1661
BshFI GGCC 4 cut(s) 5, 174, 976, 1368
BshVI ATCGAT 3 cut(s) 324, 1064, 1535
BsiHKAI GWGCWC 1 cut(s) 1504
BsiHKCI CYCGRG 1 cut(s) 942
BsiSI CCGG 3 cut(s) 15, 51, 121
BslFI GGGAC 1 cut(s) 576
BslI CCNNNNNNNGG 2 cut(s) 720, 1375
BsmAI GTCTC 4 cut(s) 99, 441, 804, 943
BsmFI GGGAC 1 cut(s) 576
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 5, 174, 976, 1368
Bso31I GGTCTC 1 cut(s) 99
BsoBI CYCGRG 1 cut(s) 942
Bsp1286I GDGCHC 2 cut(s) 1504, 1887
Bsp143I GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
Bsp68I TCGCGA 1 cut(s) 187
BspACI CCGC 4 cut(s) 20, 48, 1661, 1797
BspANI GGCC 4 cut(s) 5, 174, 976, 1368
BspCNI CTCAG 4 cut(s) 496, 949, 1366, 1873
BspDI ATCGAT 3 cut(s) 324, 1064, 1535
BspFNI CGCG 2 cut(s) 187, 1661
BspLI GGNNCC 6 cut(s) 32, 417, 564, 1156, 1626, 1665
BspOI GCTAGC 1 cut(s) 1803
BspPI GGATC 4 cut(s) 25, 38, 1244, 1301
BspQI GCTCTTC 1 cut(s) 811
BspTI CTTAAG 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 5 cut(s) 268, 321, 1637, 1676, 1753
BssECI CCNNGG 3 cut(s) 714, 715, 1721
BssMI GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
BssT1I CCWWGG 1 cut(s) 1721
Bst2UI CCWGG 3 cut(s) 210, 303, 716
Bst4CI ACNGT 4 cut(s) 238, 522, 937, 1093
Bst6I CTCTTC 1 cut(s) 811
BstAFI CTTAAG 1 cut(s) 100
BstC8I GCNNGC 5 cut(s) 48, 118, 1260, 1317, 1801
BstDEI CTNAG 6 cut(s) 483, 957, 1084, 1374, 1781, 1881
BstF5I GGATG 3 cut(s) 729, 1309, 1351
BstFNI CGCG 2 cut(s) 187, 1661
BstKTI GATC 6 cut(s) 33, 744, 869, 1252, 1309, 1539
BstMAI GTCTC 4 cut(s) 99, 441, 804, 943
BstMBI GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
BstMWI GCNNNNNNNGC 6 cut(s) 56, 65, 74, 251, 317, 1640
BstNI CCWGG 3 cut(s) 210, 303, 716
BstNSI RCATGY 3 cut(s) 588, 1262, 1319
BstSCI CCNGG 3 cut(s) 208, 301, 714
BstSFI CTRYAG 3 cut(s) 918, 1113, 1741
BstSLI GKGCMC 1 cut(s) 1504
BstUI CGCG 2 cut(s) 187, 1661
BstV2I GAAGAC 2 cut(s) 614, 1054
BstX2I RGATCY 1 cut(s) 30
BstXI CCANNNNNNTGG 2 cut(s) 784, 1066
BstYI RGATCY 1 cut(s) 30
Bsu15I ATCGAT 3 cut(s) 324, 1064, 1535
BsuRI GGCC 4 cut(s) 5, 174, 976, 1368
BsuTUI ATCGAT 3 cut(s) 324, 1064, 1535
BtgZI GCGATG 1 cut(s) 1642
BtsCI GGATG 3 cut(s) 729, 1309, 1351
BtsIMutI CAGTG 3 cut(s) 314, 1504, 1932
BtuMI TCGCGA 1 cut(s) 187
Cac8I GCNNGC 5 cut(s) 48, 118, 1260, 1317, 1801
Cfr13I GGNCC 4 cut(s) 394, 563, 974, 1367
ClaI ATCGAT 3 cut(s) 324, 1064, 1535
CsiI ACCWGGT 1 cut(s) 301
Csp6I GTAC 5 cut(s) 261, 440, 1089, 1611, 1746
CviQI GTAC 5 cut(s) 261, 440, 1089, 1611, 1746
DdeI CTNAG 6 cut(s) 483, 957, 1084, 1374, 1781, 1881
DpnI GATC 6 cut(s) 32, 743, 868, 1251, 1308, 1538
DpnII GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
DraI TTTAAA 1 cut(s) 1275
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 811
EarI CTCTTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 1721
Eco24I GRGCYC 1 cut(s) 1887
Eco31I GGTCTC 1 cut(s) 99
Eco47I GGWCC 2 cut(s) 394, 563
Eco57I CTGAAG 2 cut(s) 45, 266
Eco88I CYCGRG 1 cut(s) 942
EcoRI GAATTC 3 cut(s) 213, 509, 1198
EcoRII CCWGG 3 cut(s) 208, 301, 714
EcoT14I CCWWGG 1 cut(s) 1721
EcoT22I ATGCAT 2 cut(s) 1417, 1486
EcoT38I GRGCYC 1 cut(s) 1887
ErhI CCWWGG 1 cut(s) 1721
FalI AAGNNNNNCTT 4 cut(s) 260, 292, 1764, 1796
FaqI GGGAC 1 cut(s) 576
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 741
FokI GGATG 3 cut(s) 736, 1316, 1358
FriOI GRGCYC 1 cut(s) 1887
FspBI CTAG 6 cut(s) 255, 273, 443, 1298, 1389, 1800
HaeIII GGCC 4 cut(s) 5, 174, 976, 1368
HapII CCGG 3 cut(s) 15, 51, 121
HincII GTYRAC 2 cut(s) 1651, 1714
HindII GTYRAC 2 cut(s) 1651, 1714
HindIII AAGCTT 1 cut(s) 790
HinfI GANTC 5 cut(s) 128, 710, 773, 1177, 1894
HpaI GTTAAC 1 cut(s) 1651
HpaII CCGG 3 cut(s) 15, 51, 121
HphI GGTGA 2 cut(s) 1373, 1479
Hpy166II GTNNAC 3 cut(s) 1502, 1651, 1714
Hpy188III TCNNGA 9 cut(s) 186, 218, 392, 942, 1447, 1772, 1880, 1891, 1898
Hpy8I GTNNAC 3 cut(s) 1502, 1651, 1714
HpyAV CCTTC 6 cut(s) 597, 1020, 1117, 1145, 1444, 1897
HpyCH4III ACNGT 4 cut(s) 238, 522, 937, 1093
HpyCH4IV ACGT 1 cut(s) 1730
HpyF10VI GCNNNNNNNGC 6 cut(s) 56, 65, 74, 251, 317, 1640
HpyF3I CTNAG 6 cut(s) 483, 957, 1084, 1374, 1781, 1881
HpySE526I ACGT 1 cut(s) 1730
Ksp22I TGATCA 1 cut(s) 741
KspAI GTTAAC 1 cut(s) 1651
Kzo9I GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
LguI GCTCTTC 1 cut(s) 811
LmnI GCTCC 2 cut(s) 251, 421
LweI GCATC 3 cut(s) 1471, 1493, 1561
MabI ACCWGGT 1 cut(s) 301
MaeI CTAG 6 cut(s) 255, 273, 443, 1298, 1389, 1800
MaeII ACGT 1 cut(s) 1730
MaeIII GTNAC 3 cut(s) 829, 1093, 1391
MalI GATC 6 cut(s) 32, 743, 868, 1251, 1308, 1538
MboI GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
MfeI CAATTG 3 cut(s) 339, 1101, 1332
MflI RGATCY 1 cut(s) 30
MhlI GDGCHC 2 cut(s) 1504, 1887
MlsI TGGCCA 1 cut(s) 5
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 137, 704, 1903
MmeI TCCRAC 1 cut(s) 1031
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 2 cut(s) 1417, 1486
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 3 cut(s) 15, 402, 782
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 569
MspCI CTTAAG 1 cut(s) 100
MspI CCGG 3 cut(s) 15, 51, 121
MspR9I CCNGG 3 cut(s) 210, 303, 716
MunI CAATTG 3 cut(s) 339, 1101, 1332
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 3 cut(s) 210, 303, 716
MvnI CGCG 2 cut(s) 187, 1661
MwoI GCNNNNNNNGC 6 cut(s) 56, 65, 74, 251, 317, 1640
NdeII GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
NheI GCTAGC 1 cut(s) 1799
NlaIV GGNNCC 6 cut(s) 32, 417, 564, 1156, 1626, 1665
NmuCI GTSAC 3 cut(s) 829, 1093, 1391
NruI TCGCGA 1 cut(s) 187
NsiI ATGCAT 2 cut(s) 1417, 1486
NspI RCATGY 3 cut(s) 588, 1262, 1319
PaeI GCATGC 2 cut(s) 1262, 1319
PasI CCCWGGG 1 cut(s) 715
PciSI GCTCTTC 1 cut(s) 811
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 773, 1177
PflFI GACNNNGTC 1 cut(s) 140
PfoI TCCNGGA 1 cut(s) 208
PleI GAGTC 3 cut(s) 136, 704, 1902
PpsI GAGTC 3 cut(s) 136, 704, 1902
PsiI TTATAA 1 cut(s) 1694
Psp1406I AACGTT 1 cut(s) 1730
Psp6I CCWGG 3 cut(s) 208, 301, 714
PspGI CCWGG 3 cut(s) 208, 301, 714
PspN4I GGNNCC 6 cut(s) 32, 417, 564, 1156, 1626, 1665
PspPI GGNCC 4 cut(s) 394, 563, 974, 1367
PsuI RGATCY 1 cut(s) 30
PsyI GACNNNGTC 1 cut(s) 140
PvuII CAGCTG 1 cut(s) 569
RruI TCGCGA 1 cut(s) 187
RsaI GTAC 5 cut(s) 262, 441, 1090, 1612, 1747
RsaNI GTAC 5 cut(s) 261, 440, 1089, 1611, 1746
RseI CAYNNNNRTG 3 cut(s) 15, 402, 782
SapI GCTCTTC 1 cut(s) 811
Sau3AI GATC 6 cut(s) 30, 741, 866, 1249, 1306, 1536
Sau96I GGNCC 4 cut(s) 394, 563, 974, 1367
ScaI AGTACT 1 cut(s) 1747
SchI GAGTC 3 cut(s) 137, 704, 1903
ScrFI CCNGG 3 cut(s) 210, 303, 716
SduI GDGCHC 2 cut(s) 1504, 1887
SexAI ACCWGGT 1 cut(s) 301
SfaNI GCATC 3 cut(s) 1471, 1493, 1561
SfcI CTRYAG 3 cut(s) 918, 1113, 1741
SinI GGWCC 2 cut(s) 394, 563
SmiMI CAYNNNNRTG 3 cut(s) 15, 402, 782
SmlI CTYRAG 3 cut(s) 100, 218, 453
SmoI CTYRAG 3 cut(s) 100, 218, 453
SpeI ACTAGT 1 cut(s) 1297
SphI GCATGC 2 cut(s) 1262, 1319
SsiI CCGC 4 cut(s) 20, 48, 1661, 1797
SspMI CTAG 6 cut(s) 255, 273, 443, 1298, 1389, 1800
StyD4I CCNGG 3 cut(s) 208, 301, 714
StyI CCWWGG 1 cut(s) 1721
TaaI ACNGT 4 cut(s) 238, 522, 937, 1093
TaiI ACGT 1 cut(s) 1733
TaqI TCGA 6 cut(s) 290, 324, 1064, 1446, 1535, 1974
TatI WGTACW 2 cut(s) 1610, 1745
TfiI GAWTC 2 cut(s) 773, 1177
TscAI CASTG 3 cut(s) 321, 1504, 1932
TseFI GTSAC 3 cut(s) 829, 1093, 1391
Tsp45I GTSAC 3 cut(s) 829, 1093, 1391
TspDTI ATGAA 9 cut(s) 168, 342, 606, 870, 1056, 1293, 1491, 1544, 1964
TspRI CASTG 3 cut(s) 321, 1504, 1932
Tth111I GACNNNGTC 1 cut(s) 140
Vha464I CTTAAG 1 cut(s) 100
VneI GTGCAC 1 cut(s) 1500
VpaK11BI GGWCC 2 cut(s) 394, 563
XapI RAATTY 4 cut(s) 213, 329, 509, 1198
XceI RCATGY 3 cut(s) 588, 1262, 1319
XspI CTAG 6 cut(s) 255, 273, 443, 1298, 1389, 1800
ZrmI AGTACT 1 cut(s) 1747
Zsp2I ATGCAT 2 cut(s) 1417, 1486
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.