Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004824.1

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 3026

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004824.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atggtaagcttggtgtctcgctcttctcaaaacaccaatcaggctgtcacagtctcaacaaagaaaattaaaggtctgataagatcagaagtgcgttcatcacagaagggccatgtatccatgactacttctgctatagcaaagaaacaaactgtctcccgagtgcctctttctgagaagaaagtcaatgggcctctttcttccaagaaagcaaatagtagtatgacttccgcattgaaaggaaggaaactatttgatgaaagaagtcgtttgaccaaatcgatgaaggcaagtgctatgtcagatattgtctcaaccattgaaacttctgtagctgataaggaagagaccatttcaaatgttcctgaaggaaccgagcagcttaaatctgaagagtgtaattcaaatgttcctgaaggaaccgagcagcttaaatctgagaatccatcatcaaatgctttgaatcccgtagaacctgcatctcttgtggaaaaggacgaattattatcagatgatccaaagcatgcagaacattctttgaaggaagaaaaggagcatttgctattggatgatccaaagcatgttgaagataattcaattgcagaaaaggatatttctgtgaatggtgatgtccctactgaggaagttaatcctagtgacaatagcagtagcagatctgcattggctttagttgaagaagttcatgacatggagaaggaaaacaataacttcccagacaatgaagatacatcacctccaatcagtgcacgattacaagaattggcattaaaaatgaaatcactttgttcttcttcaactccattgtgcattacgatgccagaggagaaagatacttcatccaataacttcctctgtactgacatcatggaatcaaacgccccagttgccagtcaggatataagccacaatgatagttgggaggctgcaaatgtcaacaacatcatggaaccaaagactccagttgtggaaccaaaaaccccagttgctaatcaggatataaaacacaatgacagatgggaggttgcaaatgtcaacagcccttgggaaacattgagtgtccgcagtactggtgtcaagcaatctcttgttcaagaatatcttagcttcttaaacaccgctagcaaggaagatctgaaaagattaaagggaattggagagaaaagagcaacatacatacttgattgccgtgaagaaactcctgagcccttcaagagtcttgatgatttacaagacattggactttcagtgaagcagattaagaacttgatgaagaaagcaggaggagggcttttcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

439

Amino Acids

48.22

Weight (kDa)

5.12

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	3 cut(s)	231, 1081, 1137
AclWI	GGATC	2 cut(s)	509, 566
AcuI	CTGAAG	3 cut(s)	387, 411, 435
AfaI	GTAC	2 cut(s)	877, 1087
AfiI	CCNNNNNNNGG	1 cut(s)	640
AluBI	AGCT	5 cut(s)	9, 335, 382, 430, 1125
AluI	AGCT	5 cut(s)	9, 335, 382, 430, 1125
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	5 cut(s)	21, 58, 160, 316, 341
Alw44I	GTGCAC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	509, 566
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	2 cut(s)	109, 191
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	3 cut(s)	379, 427, 944
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	2 cut(s)	109, 191
AsuHPI	GGTGA	2 cut(s)	638, 744
AsuNHI	GCTAGC	1 cut(s)	1139
AvaI	CYCGRG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	1227
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	3 cut(s)	391, 439, 931
BccI	CCATC	2 cut(s)	454, 1029
BceAI	ACGGC	1 cut(s)	1191
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BfaI	CTAG	2 cut(s)	654, 1140
BfmI	CTRYAG	2 cut(s)	135, 330
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	2 cut(s)	674, 1150
BisI	GCNGC	3 cut(s)	380, 428, 945
BlsI	GCNGC	3 cut(s)	381, 429, 946
BmcAI	AGTACT	1 cut(s)	1087
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	109, 191
BmiI	GGNNCC	4 cut(s)	373, 421, 969, 990
BmrI	ACTGGG	2 cut(s)	896, 995
BmsI	GCATC	2 cut(s)	488, 825
BmtI	GCTAGC	1 cut(s)	1143
BmuI	ACTGGG	2 cut(s)	896, 995
BpmI	CTGGAG	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	1221
Bsa29I	ATCGAT	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	1061
BseGI	GGATG	2 cut(s)	574, 857
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	4 cut(s)	165, 429, 630, 1212
BseNI	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BseRI	GAGGAG	2 cut(s)	857, 1317
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	391, 439, 931
BshFI	GGCC	2 cut(s)	111, 193
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	111, 193
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	769, 1227
Bsp143I	GATC	5 cut(s)	83, 514, 571, 674, 1150
BspACI	CCGC	3 cut(s)	231, 1081, 1137
BspANI	GGCC	2 cut(s)	111, 193
BspCNI	CTCAG	4 cut(s)	166, 430, 631, 1213
BspDI	ATCGAT	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	4 cut(s)	373, 421, 969, 990
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	1143
BspPI	GGATC	2 cut(s)	509, 566
BspQI	GCTCTTC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BssECI	CCNNGG	1 cut(s)	1061
BssMI	GATC	5 cut(s)	83, 514, 571, 674, 1150
BssT1I	CCWWGG	1 cut(s)	1061
Bst4CI	ACNGT	2 cut(s)	52, 154
Bst6I	CTCTTC	3 cut(s)	28, 339, 387
BstC8I	GCNNGC	2 cut(s)	525, 1141
BstDEI	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
BstF5I	GGATG	2 cut(s)	574, 857
BstKTI	GATC	5 cut(s)	86, 517, 574, 677, 1153
BstMAI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BstMBI	GATC	5 cut(s)	83, 514, 571, 674, 1150
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNSI	RCATGY	2 cut(s)	527, 584
BstSFI	CTRYAG	2 cut(s)	135, 330
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	391, 439, 931
BstX2I	RGATCY	2 cut(s)	674, 1150
BstYI	RGATCY	2 cut(s)	674, 1150
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	111, 193
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	574, 857
BtsIMutI	CAGTG	2 cut(s)	769, 1272
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	525, 1141
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	109, 191
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	876, 1086
CviAII	CATG	8 cut(s)	113, 121, 524, 581, 704, 709, 886, 964
CviQI	GTAC	2 cut(s)	876, 1086
DdeI	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
DpnI	GATC	5 cut(s)	85, 516, 573, 676, 1152
DpnII	GATC	5 cut(s)	83, 514, 571, 674, 1150
Eam1104I	CTCTTC	3 cut(s)	28, 339, 387
EarI	CTCTTC	3 cut(s)	28, 339, 387
Eco130I	CCWWGG	1 cut(s)	1061
Eco24I	GRGCYC	1 cut(s)	1227
Eco31I	GGTCTC	1 cut(s)	341
Eco57I	CTGAAG	3 cut(s)	387, 411, 435
Eco88I	CYCGRG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	1061
EcoT38I	GRGCYC	1 cut(s)	1227
ErhI	CCWWGG	1 cut(s)	1061
FaeI	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	8 cut(s)	112, 120, 523, 580, 703, 708, 885, 963
Fnu4HI	GCNGC	3 cut(s)	380, 428, 945
FokI	GGATG	2 cut(s)	581, 844
FriOI	GRGCYC	1 cut(s)	1227
Fsp4HI	GCNGC	3 cut(s)	380, 428, 945
FspBI	CTAG	2 cut(s)	654, 1140
GluI	GCNGC	3 cut(s)	380, 428, 945
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	111, 193
Hin1II	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
HincII	GTYRAC	2 cut(s)	955, 1054
HindII	GTYRAC	2 cut(s)	955, 1054
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	5 cut(s)	442, 463, 890, 976, 1234
HphI	GGTGA	2 cut(s)	638, 744
Hpy166II	GTNNAC	3 cut(s)	767, 955, 1054
Hpy188I	TCNGA	8 cut(s)	78, 88, 175, 304, 391, 439, 511, 1155
Hpy8I	GTNNAC	3 cut(s)	767, 955, 1054
HpyAV	CCTTC	8 cut(s)	100, 237, 280, 362, 410, 535, 709, 1237
HpyCH4III	ACNGT	2 cut(s)	52, 154
HpyCH4V	TGCA	8 cut(s)	479, 527, 602, 680, 767, 828, 947, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
Hsp92II	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
Kzo9I	GATC	5 cut(s)	83, 514, 571, 674, 1150
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	3 cut(s)	391, 439, 931
LweI	GCATC	2 cut(s)	488, 825
MaeI	CTAG	2 cut(s)	654, 1140
MaeIII	GTNAC	2 cut(s)	46, 656
MalI	GATC	5 cut(s)	85, 516, 573, 676, 1152
MboI	GATC	5 cut(s)	83, 514, 571, 674, 1150
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	674, 1150
MhlI	GDGCHC	2 cut(s)	769, 1227
MluCI	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
MlyI	GAGTC	2 cut(s)	970, 1243
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
MslI	CAYNNNNRTG	1 cut(s)	833
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	905
NdeII	GATC	5 cut(s)	83, 514, 571, 674, 1150
NheI	GCTAGC	1 cut(s)	1139
NlaIII	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
NlaIV	GGNNCC	4 cut(s)	373, 421, 969, 990
NmuCI	GTSAC	2 cut(s)	46, 656
NspI	RCATGY	2 cut(s)	527, 584
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	442, 463, 890
PkrI	GCNGC	3 cut(s)	381, 429, 946
PleI	GAGTC	2 cut(s)	970, 1242
PpsI	GAGTC	2 cut(s)	970, 1242
PspN4I	GGNNCC	4 cut(s)	373, 421, 969, 990
PspPI	GGNCC	2 cut(s)	109, 191
PsuI	RGATCY	2 cut(s)	674, 1150
RsaI	GTAC	2 cut(s)	877, 1087
RsaNI	GTAC	2 cut(s)	876, 1086
RseI	CAYNNNNRTG	1 cut(s)	833
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
SatI	GCNGC	3 cut(s)	380, 428, 945
Sau3AI	GATC	5 cut(s)	83, 514, 571, 674, 1150
Sau96I	GGNCC	2 cut(s)	109, 191
ScaI	AGTACT	1 cut(s)	1087
SchI	GAGTC	2 cut(s)	970, 1243
SduI	GDGCHC	2 cut(s)	769, 1227
SetI	ASST	9 cut(s)	11, 76, 337, 384, 432, 478, 757, 1044, 1127
SfaNI	GCATC	2 cut(s)	488, 825
SfcI	CTRYAG	2 cut(s)	135, 330
SmiMI	CAYNNNNRTG	1 cut(s)	833
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
SsiI	CCGC	3 cut(s)	231, 1081, 1137
SspMI	CTAG	2 cut(s)	654, 1140
StyI	CCWWGG	1 cut(s)	1061
TaaI	ACNGT	2 cut(s)	52, 154
TaqI	TCGA	2 cut(s)	281, 1314
TasI	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
TatI	WGTACW	2 cut(s)	875, 1085
TfiI	GAWTC	3 cut(s)	442, 463, 890
Tru1I	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
Tru9I	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
TscAI	CASTG	2 cut(s)	769, 1272
TseFI	GTSAC	2 cut(s)	46, 656
TseI	GCWGC	3 cut(s)	379, 427, 944
Tsp45I	GTSAC	2 cut(s)	46, 656
TspDTI	ATGAA	8 cut(s)	87, 273, 299, 692, 756, 809, 846, 1304
TspRI	CASTG	2 cut(s)	769, 1272
VneI	GTGCAC	1 cut(s)	765
XceI	RCATGY	2 cut(s)	527, 584
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	654, 1140
ZrmI	AGTACT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.