Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

33854114 .. 33855645

Gene Structure 1532 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1272100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGTCGGACCGACAATCCCAACCCTTGACCTCACAAATTGGAGAGGTACTAACTGATTTAACAACGCTGATTTCTCAACTTCAAGTTGAGGAGTCATCGGTATCGGCAGAACCTGCACGTGTCGATCTAAAGCAGGCATTTATCGACAGGTTTTTAAACCTGTTGAACACGTCTTCTCTAGAAGACCTAGAAAATATGAAGGGTATCGGCGAGACGAGAGCCGCAAAAATAATGGAAGTGCGCGCGGAGGAGGAAACTCCTTTTACGAGCCTTGCTGACCTGGGAAAGATTGGCCTGTCGATAAAGCAGGCTAAGGGTCTTGTGAGGAAGGAATTCGCCAGGATGCTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003774 GO:0003777 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005815 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0005886 GO:0005929 GO:0005930 GO:0006810 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007275 GO:0007399 GO:0008088 GO:0008150 GO:0008574 GO:0009987 GO:0010970 GO:0015630 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022008 GO:0022607 GO:0030030 GO:0030031 GO:0030154 GO:0030705 GO:0030990 GO:0030992 GO:0031503 GO:0032391 GO:0032501 GO:0032502 GO:0032838 GO:0032991 GO:0035735 GO:0035869 GO:0036064 GO:0042073 GO:0042623 GO:0042995 GO:0043005 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044085 GO:0044422 GO:0044424 GO:0044425 GO:0044430 GO:0044441 GO:0044444 GO:0044446 GO:0044459 GO:0044463 GO:0044464 GO:0044782 GO:0046907 GO:0048731 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0051668 GO:0060271 GO:0070925 GO:0071840 GO:0071944 GO:0097014 GO:0097120 GO:0097458 GO:0097730 GO:0097731 GO:0097733 GO:0098590 GO:0098935 GO:0098937 GO:0098971 GO:0099111 GO:0099568 GO:0120025 GO:0120031 GO:0120036 GO:0120038 GO:1990075 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

118

Amino Acids

12.95

Weight (kDa)

4.81

Isoelectric Point (pI)

40.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_3	PF12836	55 - 97	1.4e-07	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccII	CGCG	2 cut(s)	243, 245
AciI	CCGC	2 cut(s)	222, 245
AcsI	RAATTY	1 cut(s)	332
AcvI	CACGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	48
AflIII	ACRYGT	2 cut(s)	118, 168
AgsI	TTSAA	2 cut(s)	83, 166
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	2 cut(s)	279, 338
Alw26I	GTCTC	1 cut(s)	206
AlwNI	CAGNNNCTG	1 cut(s)	113
AoxI	GGCC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	332
Asp700I	GAANNNNTTC	1 cut(s)	332
AspLEI	GCGC	2 cut(s)	243, 245
AspS9I	GGNCC	1 cut(s)	7
AvaII	GGWCC	1 cut(s)	7
BbrPI	CACGTG	1 cut(s)	119
BbsI	GAAGAC	2 cut(s)	165, 189
BciT130I	CCWGG	2 cut(s)	281, 340
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	179, 188
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	281, 340
Bme18I	GGWCC	1 cut(s)	7
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	281, 340
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	2 cut(s)	165, 189
Bpu10I	CCTNAGC	1 cut(s)	312
BsaAI	YACGTR	1 cut(s)	119
BsaJI	CCNNGG	1 cut(s)	280
BseBI	CCWGG	2 cut(s)	281, 340
BseDI	CCNNGG	1 cut(s)	280
BseGI	GGATG	1 cut(s)	348
BsePI	GCGCGC	1 cut(s)	241
BseRI	GAGGAG	2 cut(s)	104, 263
BsgI	GTGCAG	1 cut(s)	99
Bsh1236I	CGCG	2 cut(s)	243, 245
BshFI	GGCC	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	206
BsmBI	CGTCTC	1 cut(s)	206
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	124
BspACI	CCGC	2 cut(s)	222, 245
BspANI	GGCC	1 cut(s)	294
BspFNI	CGCG	2 cut(s)	243, 245
BspMI	ACCTGC	1 cut(s)	121
BssECI	CCNNGG	1 cut(s)	280
BssHII	GCGCGC	1 cut(s)	241
BssMI	GATC	1 cut(s)	124
Bst2UI	CCWGG	2 cut(s)	281, 340
BstAPI	GCANNNNNTGC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	3 cut(s)	135, 243, 309
BstDEI	CTNAG	1 cut(s)	312
BstF5I	GGATG	1 cut(s)	348
BstFNI	CGCG	2 cut(s)	243, 245
BstHHI	GCGC	2 cut(s)	243, 245
BstKTI	GATC	1 cut(s)	127
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNI	CCWGG	2 cut(s)	281, 340
BstSCI	CCNGG	2 cut(s)	279, 338
BstUI	CGCG	2 cut(s)	243, 245
BstV2I	GAAGAC	2 cut(s)	165, 189
BsuRI	GGCC	1 cut(s)	294
BtrI	CACGTC	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	348
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	3 cut(s)	135, 243, 309
CaiI	CAGNNNCTG	1 cut(s)	113
CfoI	GCGC	2 cut(s)	243, 245
Cfr13I	GGNCC	1 cut(s)	7
CpoI	CGGWCCG	1 cut(s)	7
Csp6I	GTAC	1 cut(s)	47
CspI	CGGWCCG	1 cut(s)	7
CviJI	RGCY	4 cut(s)	221, 270, 294, 311
CviKI_1	RGCY	4 cut(s)	221, 270, 294, 311
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	7
Eco72I	CACGTG	1 cut(s)	119
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	279, 338
Esp3I	CGTCTC	1 cut(s)	206
FaiI	YATR	1 cut(s)	197
Fnu4HI	GCNGC	1 cut(s)	222
Fsp4HI	GCNGC	1 cut(s)	222
FspBI	CTAG	2 cut(s)	179, 188
GlaI	GCGC	2 cut(s)	242, 244
GluI	GCNGC	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	294
HhaI	GCGC	2 cut(s)	243, 245
Hin6I	GCGC	2 cut(s)	241, 243
HinP1I	GCGC	2 cut(s)	241, 243
HinfI	GANTC	1 cut(s)	92
Hpy188I	TCNGA	1 cut(s)	7
Hpy188III	TCNNGA	1 cut(s)	179
HpyAV	CCTTC	2 cut(s)	193, 322
HpyCH4IV	ACGT	2 cut(s)	118, 170
HpyCH4V	TGCA	1 cut(s)	116
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	1 cut(s)	312
HpySE526I	ACGT	2 cut(s)	118, 170
HspAI	GCGC	2 cut(s)	241, 243
Kzo9I	GATC	1 cut(s)	124
LpnPI	CCDG	9 cut(s)	119, 126, 133, 173, 266, 293, 293, 308, 325
LweI	GCATC	1 cut(s)	333
MaeI	CTAG	2 cut(s)	179, 188
MaeII	ACGT	2 cut(s)	118, 170
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	2 cut(s)	165, 194
MluCI	AATT	2 cut(s)	36, 332
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	6 cut(s)	37, 40, 82, 241, 244, 318
MroXI	GAANNNNTTC	1 cut(s)	332
MseI	TTAA	2 cut(s)	59, 155
MspR9I	CCNGG	2 cut(s)	281, 340
MvaI	CCWGG	2 cut(s)	281, 340
MvnI	CGCG	2 cut(s)	243, 245
MwoI	GCNNNNNNNGC	1 cut(s)	113
NdeII	GATC	1 cut(s)	124
PauI	GCGCGC	1 cut(s)	241
PdmI	GAANNNNTTC	1 cut(s)	332
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	1 cut(s)	100
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	100
Ppu21I	YACGTR	1 cut(s)	119
Psp6I	CCWGG	2 cut(s)	279, 338
PspCI	CACGTG	1 cut(s)	119
PspGI	CCWGG	2 cut(s)	279, 338
PspPI	GGNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	113
PteI	GCGCGC	1 cut(s)	241
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
Rsr2I	CGGWCCG	1 cut(s)	7
RsrII	CGGWCCG	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	59, 155
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	7
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	2 cut(s)	281, 340
SetI	ASST	9 cut(s)	32, 48, 115, 121, 152, 162, 173, 189, 282
SfaNI	GCATC	1 cut(s)	333
SinI	GGWCC	1 cut(s)	7
Sse9I	AATT	2 cut(s)	36, 332
SsiI	CCGC	2 cut(s)	222, 245
SspMI	CTAG	2 cut(s)	179, 188
StyD4I	CCNGG	2 cut(s)	279, 338
TaiI	ACGT	2 cut(s)	121, 173
TaqI	TCGA	4 cut(s)	123, 144, 299, 348
TaqII	GACCGA	1 cut(s)	24
TasI	AATT	2 cut(s)	36, 332
TauI	GCSGC	1 cut(s)	224
Tru1I	TTAA	2 cut(s)	59, 155
Tru9I	TTAA	2 cut(s)	59, 155
TspDTI	ATGAA	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	7
XapI	RAATTY	1 cut(s)	332
XbaI	TCTAGA	1 cut(s)	178
XmnI	GAANNNNTTC	1 cut(s)	332
XspI	CTAG	2 cut(s)	179, 188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.