Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0024583.1

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1835

Gene Structure 1835 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0024583.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggcttccaacaaccccgacctcaccaaaacccctaaacgccgctccaacacatcgcgaaaggtccgactcgtggcgaagatcggcggcgctgcaaatccggcggcagaggcttccggtggagtgtcgtggatctcggtgaacaagcccgccggagaggcgtcggacagtgtcactctctccttcagagaccaatcagcgagccgtaaagagtcttatgaattggacaattgctatgaccaaaatgaggataatggcctaattttttcgagagaagtaaagcctttaattcctggagttcttgagggctgtaatgccactgtcattgctttgggagctagagggagtggaaagactagcttaattcagggttcgagtgagaaaccaggtttggcaacaatggcaaccaatgaaattatttcagtggctgagaaaaacggatgttcaattactatatcctcatatgaggtttatcaggaccacatttatgatatattggatccatcacgcccagaagttttggttctgggagacactcaaggaaacattcggcttaaaggactttctcaggtgcctgtaaagtccatgttggaatttagcaaactgtatgttagtgggggtacttcccgtaaaccagcaccaaagggaccagctgaactttctcgtaggtgccacaagggattgatagtatatgtatcatctcaaagagaaaattcagatacccttcaagtcagcaagttaaactttattgacttagcaggttacgaagatacaagaaggaagagcattgactgcgttaatcatgttgagagcagtaaaatcaataagtcaatctatgccatgatcaatgttgttaatgca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

287

Amino Acids

30.94

Weight (kDa)

8.85

Isoelectric Point (pI)

39.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	749
AccB1I	GGYRCC	2 cut(s)	571, 669
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	58
AciI	CCGC	4 cut(s)	43, 87, 104, 150
AclWI	GGATC	3 cut(s)	140, 494, 507
AcsI	RAATTY	2 cut(s)	593, 712
AcuI	CTGAAG	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	2 cut(s)	73, 247
AgsI	TTSAA	2 cut(s)	447, 728
AjnI	CCWGG	2 cut(s)	292, 385
AjuI	GAANNNNNNNTTGG	2 cut(s)	374, 406
AluBI	AGCT	3 cut(s)	338, 360, 653
AluI	AGCT	3 cut(s)	338, 360, 653
Alw26I	GTCTC	2 cut(s)	183, 525
AlwI	GGATC	3 cut(s)	140, 494, 507
AlwNI	CAGNNNCTG	1 cut(s)	428
AoxI	GGCC	1 cut(s)	256
ApeKI	GCWGC	1 cut(s)	92
ApoI	RAATTY	2 cut(s)	593, 712
AspLEI	GCGC	1 cut(s)	92
AspS9I	GGNCC	3 cut(s)	64, 478, 647
AsuHPI	GGTGA	2 cut(s)	16, 151
AvaII	GGWCC	3 cut(s)	64, 478, 647
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	2 cut(s)	571, 669
BauI	CACGAG	1 cut(s)	71
BbvI	GCAGC	1 cut(s)	79
BccI	CCATC	1 cut(s)	511
BceAI	ACGGC	1 cut(s)	189
BciT130I	CCWGG	2 cut(s)	294, 387
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	2 cut(s)	183, 525
BfaI	CTAG	2 cut(s)	339, 357
BfoI	RGCGCY	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	749
BglI	GCCNNNNNGGC	1 cut(s)	158
BisI	GCNGC	4 cut(s)	43, 88, 93, 105
BlsI	GCNGC	4 cut(s)	44, 89, 94, 106
Bme1390I	CCNGG	2 cut(s)	294, 387
Bme18I	GGWCC	3 cut(s)	64, 478, 647
BmgT120I	GGNCC	3 cut(s)	64, 478, 647
BmiI	GGNNCC	4 cut(s)	501, 573, 648, 671
BmrFI	CCNGG	2 cut(s)	294, 387
BpmI	CTGGAG	1 cut(s)	315
BpuEI	CTTGAG	2 cut(s)	323, 522
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	1 cut(s)	183
BsaWI	WCCGGW	1 cut(s)	116
Bsc4I	CCNNNNNNNGG	2 cut(s)	73, 247
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	294, 387
BseGI	GGATG	1 cut(s)	446
BseLI	CCNNNNNNNGG	2 cut(s)	73, 247
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	2 cut(s)	420, 581
BseXI	GCAGC	1 cut(s)	79
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	258
BshNI	GGYRCC	2 cut(s)	571, 669
BsiSI	CCGG	3 cut(s)	101, 117, 153
BslFI	GGGAC	1 cut(s)	660
BslI	CCNNNNNNNGG	2 cut(s)	73, 247
BsmAI	GTCTC	2 cut(s)	183, 525
BsmFI	GGGAC	1 cut(s)	660
BsnI	GGCC	1 cut(s)	258
Bso31I	GGTCTC	1 cut(s)	183
Bsp143I	GATC	4 cut(s)	81, 132, 499, 843
Bsp68I	TCGCGA	1 cut(s)	58
BspACI	CCGC	4 cut(s)	43, 87, 104, 150
BspANI	GGCC	1 cut(s)	258
BspCNI	CTCAG	2 cut(s)	421, 580
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	4 cut(s)	501, 573, 648, 671
BspMI	ACCTGC	1 cut(s)	749
BspPI	GGATC	3 cut(s)	140, 494, 507
BspQI	GCTCTTC	1 cut(s)	776
BspT107I	GGYRCC	2 cut(s)	571, 669
BspTNI	GGTCTC	1 cut(s)	183
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	324
BssMI	GATC	4 cut(s)	81, 132, 499, 843
BssNI	GRCGYC	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	71
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	2 cut(s)	294, 387
Bst4CI	ACNGT	3 cut(s)	170, 322, 606
Bst6I	CTCTTC	1 cut(s)	776
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	792
BstC8I	GCNNGC	2 cut(s)	150, 202
BstDEI	CTNAG	3 cut(s)	429, 567, 754
BstF5I	GGATG	1 cut(s)	446
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	93
BstHHI	GCGC	1 cut(s)	92
BstKTI	GATC	4 cut(s)	84, 135, 502, 846
BstMAI	GTCTC	2 cut(s)	183, 525
BstMBI	GATC	4 cut(s)	81, 132, 499, 843
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 110, 158, 335, 401, 792
BstNI	CCWGG	2 cut(s)	294, 387
BstSCI	CCNGG	2 cut(s)	292, 385
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	79
BstX2I	RGATCY	2 cut(s)	132, 499
BstYI	RGATCY	2 cut(s)	132, 499
BsuRI	GGCC	1 cut(s)	258
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	446
BtsIMutI	CAGTG	3 cut(s)	175, 318, 429
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	1 cut(s)	749
Cac8I	GCNNGC	2 cut(s)	150, 202
CaiI	CAGNNNCTG	1 cut(s)	428
CfoI	GCGC	1 cut(s)	92
Cfr13I	GGNCC	3 cut(s)	64, 478, 647
CseI	GACGC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	1 cut(s)	621
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviAII	CATG	3 cut(s)	586, 803, 841
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	3 cut(s)	429, 567, 754
DpnI	GATC	4 cut(s)	83, 134, 501, 845
DpnII	GATC	4 cut(s)	81, 132, 499, 843
Eam1104I	CTCTTC	1 cut(s)	776
EarI	CTCTTC	1 cut(s)	776
Eco31I	GGTCTC	1 cut(s)	183
Eco47I	GGWCC	3 cut(s)	64, 478, 647
Eco57I	CTGAAG	1 cut(s)	169
EcoRII	CCWGG	2 cut(s)	292, 385
FaeI	CATG	3 cut(s)	589, 806, 844
FalI	AAGNNNNNCTT	4 cut(s)	344, 376, 728, 760
FaqI	GGGAC	1 cut(s)	660
FatI	CATG	3 cut(s)	585, 802, 840
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	4 cut(s)	43, 88, 93, 105
FokI	GGATG	1 cut(s)	453
Fsp4HI	GCNGC	4 cut(s)	43, 88, 93, 105
FspBI	CTAG	2 cut(s)	339, 357
GlaI	GCGC	1 cut(s)	91
GluI	GCNGC	4 cut(s)	43, 88, 93, 105
GsuI	CTGGAG	1 cut(s)	315
HaeII	RGCGCY	1 cut(s)	93
HaeIII	GGCC	1 cut(s)	258
HapII	CCGG	3 cut(s)	101, 117, 153
HgaI	GACGC	1 cut(s)	150
HhaI	GCGC	1 cut(s)	92
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	3 cut(s)	589, 806, 844
Hin6I	GCGC	1 cut(s)	90
HinP1I	GCGC	1 cut(s)	90
HinfI	GANTC	2 cut(s)	69, 212
HpaII	CCGG	3 cut(s)	101, 117, 153
HphI	GGTGA	2 cut(s)	16, 151
Hpy166II	GTNNAC	2 cut(s)	142, 632
Hpy188I	TCNGA	4 cut(s)	68, 166, 188, 718
Hpy188III	TCNNGA	4 cut(s)	57, 270, 302, 476
Hpy8I	GTNNAC	2 cut(s)	142, 632
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	193, 734, 771
HpyCH4III	ACNGT	3 cut(s)	170, 322, 606
HpyCH4V	TGCA	2 cut(s)	95, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 110, 158, 335, 401, 792
HpyF3I	CTNAG	3 cut(s)	429, 567, 754
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	3 cut(s)	589, 806, 844
HspAI	GCGC	1 cut(s)	90
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	4 cut(s)	81, 132, 499, 843
LguI	GCTCTTC	1 cut(s)	776
LmnI	GCTCC	2 cut(s)	50, 335
Lsp1109I	GCAGC	1 cut(s)	79
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	2 cut(s)	339, 357
MaeIII	GTNAC	2 cut(s)	172, 761
MalI	GATC	4 cut(s)	83, 134, 501, 845
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	4 cut(s)	81, 132, 499, 843
MboII	GAAGA	3 cut(s)	91, 779, 793
MfeI	CAATTG	1 cut(s)	229
MflI	RGATCY	2 cut(s)	132, 499
MluCI	AATT	9 cut(s)	221, 229, 261, 288, 363, 414, 447, 593, 712
MlyI	GAGTC	2 cut(s)	63, 221
MmeI	TCCRAC	5 cut(s)	33, 72, 91, 144, 570
MnlI	CCTC	8 cut(s)	32, 103, 151, 241, 298, 335, 460, 469
MseI	TTAA	6 cut(s)	287, 362, 555, 740, 798, 855
MslI	CAYNNNNRTG	1 cut(s)	486
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	101, 117, 153
MspR9I	CCNGG	2 cut(s)	294, 387
MunI	CAATTG	1 cut(s)	229
MvaI	CCWGG	2 cut(s)	294, 387
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	6 cut(s)	101, 110, 158, 335, 401, 792
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	4 cut(s)	81, 132, 499, 843
NlaIII	CATG	3 cut(s)	589, 806, 844
NlaIV	GGNNCC	4 cut(s)	501, 573, 648, 671
NmuCI	GTSAC	1 cut(s)	172
NruI	TCGCGA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	776
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	4 cut(s)	44, 89, 94, 106
PleI	GAGTC	2 cut(s)	63, 220
PpsI	GAGTC	2 cut(s)	63, 220
Psp6I	CCWGG	2 cut(s)	292, 385
PspGI	CCWGG	2 cut(s)	292, 385
PspN4I	GGNNCC	4 cut(s)	501, 573, 648, 671
PspPI	GGNCC	3 cut(s)	64, 478, 647
PstNI	CAGNNNCTG	1 cut(s)	428
PsuI	RGATCY	2 cut(s)	132, 499
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	653
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
RseI	CAYNNNNRTG	1 cut(s)	486
SapI	GCTCTTC	1 cut(s)	776
SaqAI	TTAA	6 cut(s)	287, 362, 555, 740, 798, 855
SatI	GCNGC	4 cut(s)	43, 88, 93, 105
Sau3AI	GATC	4 cut(s)	81, 132, 499, 843
Sau96I	GGNCC	3 cut(s)	64, 478, 647
SchI	GAGTC	2 cut(s)	63, 221
ScrFI	CCNGG	2 cut(s)	294, 387
SexAI	ACCWGGT	1 cut(s)	385
SinI	GGWCC	3 cut(s)	64, 478, 647
SmiMI	CAYNNNNRTG	1 cut(s)	486
SmlI	CTYRAG	2 cut(s)	302, 537
SmoI	CTYRAG	2 cut(s)	302, 537
Sse9I	AATT	9 cut(s)	221, 229, 261, 288, 363, 414, 447, 593, 712
SsiI	CCGC	4 cut(s)	43, 87, 104, 150
SspMI	CTAG	2 cut(s)	339, 357
StyD4I	CCNGG	2 cut(s)	292, 385
TaaI	ACNGT	3 cut(s)	170, 322, 606
TaqI	TCGA	2 cut(s)	269, 374
TasI	AATT	9 cut(s)	221, 229, 261, 288, 363, 414, 447, 593, 712
TauI	GCSGC	3 cut(s)	45, 90, 107
Tru1I	TTAA	6 cut(s)	287, 362, 555, 740, 798, 855
Tru9I	TTAA	6 cut(s)	287, 362, 555, 740, 798, 855
TscAI	CASTG	3 cut(s)	175, 325, 429
TseFI	GTSAC	1 cut(s)	172
TseI	GCWGC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	172
TspDTI	ATGAA	2 cut(s)	234, 426
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	3 cut(s)	175, 325, 429
Tth111I	GACNNNGTC	1 cut(s)	170
VpaK11BI	GGWCC	3 cut(s)	64, 478, 647
XapI	RAATTY	2 cut(s)	593, 712
XspI	CTAG	2 cut(s)	339, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.