Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

65552303 .. 65557369

Gene Structure 5067 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG427300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2316 bp

ATGGCTTCCAACAACCCCGACCTCACCAAAACCCCTAAACGCCGCTCCAACACATCGCGAAAGGTCCGACTCGTGGCGAAGATAGGCGGCGTTGCAAATCCGGCGGCCGAGGTTTCCGGCGGAGTGTCGTGGATCTTGGTGAACAAGCCCGCCGGAGAGGCGTCGGACAGTGTCACTCTCTCCTTCAGAGACCAATCAGCGAGCCGTAAAGAGTCTTACGAATTGGACAATTGCTATGACCAAAATGAGGATAATGGCCTAATTTTTTCGAGAGAAGTAAAGCCTTTAATTCCTGGAGTTCTGGAGGGCTGTAATGCCACTGTCATTGCTTTGGGAGCCAGAGGGAGTGGAAAGACTAGCTTAATTCAGGGTTCGAGTGAGAAACCAGGTTTGGCAACAATGGCAACCGATGAAATTATTTCAATGGCTGAGAAAAACGGATGTTCAATCACTATATCCTCATATGAGGTTTATCAGGACCACATTTATGATATATTGGATCCATCACGCCCAGAAGTTTTGGTTCTGGGAGACACTCAAGGAAACATTCGGCTTAAAGGACTTTCTCAGGTGCCTGTGAAGTCCATGTTGGAATTTAGCAAACTGTATGTTAGTGGGGGTACTTCCCGTAAACCAGCACCAAAGGGACCAGCTGAACTTTCTCGTAGGTGCCACAAGGGATTGATAGTATATGTATCATCTCAAAGAGAAAATTCAGATACCCTTCAAGTCAGCAAGTTAAACTTTATTGACTTAGCAGGTTATGAAGATACAAGAAGGAAGAGCATTGACTGCGTTAATCATGTTGAGAGCAGTAAAATCAATAAGTCAATCTATGCCATGATCAATGTTGTTAATGCAGTGAGTTCCAATGGAAACCATGTACCTTATCGGGAAAGCAAACTCACACATTTATTGCAAGACTCCCTGGGAGGGATGAGTAGAGTTTTGACAATCACTTGCTTGAAACTGTCATTTTGCCAAGATTCTATTTACATGGTAAGCTTGGTGTCTCGCTCTTCTCAAAACACCAATCAGGCTGTCACAGTCTCAACAAAGAAAATTAAAGGTCTGACAAGATCAGAAGTGCGTTCATCACAGAAGGGCCATGTATCCATGACTACTTCTGCTATAGCAAAGAAACAAACTGTCTCCCGAGTGCCTCTTTCTGAGAAGAAAGTCAATGGGCCTCTTTCTTCCAAGAAAGCAAATAGTAGTATGACTTCCGCATTGAAAGGAAGGAAACTATTTGATGAAAGAAGTCGTTTGACCAAATCAATGAAGGCAAGTGCTATGTCAGATATTGTCTCAACCATTGAAACTTCTGTAGCTGATAAGGAAGAGACCATTTCAAATGTTCCTGAACGAACCGAGCAGCTTAAATCTGAAGAGTGTAATTCAAATGTTCCTGAAGGAACCGAGCAGCTTAAATCTGAGAATCCATCATCAAATGCTTTGAATCCCGTAGAACCTGCATCTCTTGTGGAAAAGGACGAATTATTATCAGATGATCCAAAGCATGCAGAACATTCTTTGAAGGAAGAAAAGGAGCATTTGCTATTGGATGATCCAAAGCATGCTGAAGATAATTCAATTGCAGAAAAGGATATTTCTGTGAATGGTGATGTCCCTACTGAGGAAGTTAATCCTAGTGACAATAGCAGTAGCAGATATGCATTGGCTTTAGTTGAAGAAGTTCATGACATGGAGAAGGAAAACAATGACTTCCCAGACAATGAAGATACATCACCTCCAATCAGTGCACGATTACAAGAATTGGCATTAAAAATGAAATCACTTTGTTCTTCTTCAACTCCATTGTGCATTACGATGCCAGAGGAGAAAGATACTTCATCCAATAACTTCCTCTGTACTGACATCATGGAATCAAACGCCCCAGTTGCCAGTCAGGATATAAGCCACAATGATAGTTGGGAGGCTGCAAATGTCAACAACATCATGGAACCAAAGACTCCAGTTGTGGAACCAAAAACCCCAGTTGCTAATCAGGATATAAAACACAATGACAGATGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGTCCGCAGTACTGGTGTCAAGCAATCTCTTGTTCAAGAATATCTTAGCTTCTTAAACACCGCTAGCAAGGAAGATCTGAAAAGATTAAAGGGAATTGGAGAGAAAAGAGCAACATACATACTTGATTGCCGTGAAGAAACTCCTGAGCCCTTCAAGAGTCTTGATGATTTACAAGACATTGGACTTTCAGTGAAGCAGATTAAGAACTTGATGAAGAAAGCAGGAGGAGGGCTTTTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

771

Amino Acids

84.38

Weight (kDa)

5.75

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	59 - 325	2.6e-59	Kinesin motor domain
Microtub_bd	PF16796	61 - 166	6.1e-10	Microtubule binding
HHH_3	PF12836	709 - 751	1.5e-07	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	749, 1480
AccB1I	GGYRCC	2 cut(s)	571, 669
AccBSI	CCGCTC	1 cut(s)	45
AccII	CGCG	1 cut(s)	58
AciI	CCGC	8 cut(s)	43, 87, 104, 120, 150, 1227, 2077, 2133
AclI	AACGTT	1 cut(s)	2066
AclWI	GGATC	5 cut(s)	140, 494, 507, 1505, 1562
AcoI	YGGCCR	1 cut(s)	105
AcsI	RAATTY	2 cut(s)	593, 712
AcuI	CTGAAG	4 cut(s)	169, 1407, 1431, 1602
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	4 cut(s)	622, 885, 1873, 2083
AfiI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1636
AjnI	CCWGG	3 cut(s)	292, 385, 927
AjuI	GAANNNNNNNTTGG	4 cut(s)	374, 406, 572, 604
AluBI	AGCT	7 cut(s)	360, 653, 1005, 1331, 1378, 1426, 2121
AluI	AGCT	7 cut(s)	360, 653, 1005, 1331, 1378, 1426, 2121
Alw21I	GWGCWC	1 cut(s)	1765
Alw26I	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
Alw44I	GTGCAC	1 cut(s)	1761
AlwI	GGATC	5 cut(s)	140, 494, 507, 1505, 1562
Ama87I	CYCGRG	1 cut(s)	1155
AoxI	GGCC	4 cut(s)	105, 256, 1105, 1187
ApaLI	GTGCAC	1 cut(s)	1761
ApeKI	GCWGC	3 cut(s)	1375, 1423, 1940
ApoI	RAATTY	2 cut(s)	593, 712
Asp700I	GAANNNNTTC	1 cut(s)	1695
AspS9I	GGNCC	5 cut(s)	64, 478, 647, 1105, 1187
AsuHPI	GGTGA	4 cut(s)	16, 151, 1634, 1740
AsuNHI	GCTAGC	1 cut(s)	2135
AvaI	CYCGRG	1 cut(s)	1155
AvaII	GGWCC	3 cut(s)	64, 478, 647
BaeGI	GKGCMC	1 cut(s)	1765
BamHI	GGATCC	1 cut(s)	499
BanI	GGYRCC	2 cut(s)	571, 669
BanII	GRGCYC	1 cut(s)	2223
BarI	GAAGNNNNNNTAC	2 cut(s)	1207, 1239
BauI	CACGAG	1 cut(s)	71
Bbv12I	GWGCWC	1 cut(s)	1765
BbvI	GCAGC	3 cut(s)	1387, 1435, 1927
BccI	CCATC	3 cut(s)	511, 1450, 2025
BceAI	ACGGC	2 cut(s)	189, 2187
BciT130I	CCWGG	3 cut(s)	294, 387, 929
BciVI	GTATCC	1 cut(s)	1123
BclI	TGATCA	1 cut(s)	843
BcoDI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BfaI	CTAG	3 cut(s)	357, 1650, 2136
BfmI	CTRYAG	2 cut(s)	1131, 1326
BfuAI	ACCTGC	2 cut(s)	749, 1480
BfuI	GTATCC	1 cut(s)	1123
BglI	GCCNNNNNGGC	1 cut(s)	158
BglII	AGATCT	1 cut(s)	2146
BisI	GCNGC	6 cut(s)	43, 88, 105, 1376, 1424, 1941
BlsI	GCNGC	6 cut(s)	44, 89, 106, 1377, 1425, 1942
BmcAI	AGTACT	1 cut(s)	2083
Bme1390I	CCNGG	3 cut(s)	294, 387, 929
Bme18I	GGWCC	3 cut(s)	64, 478, 647
BmeT110I	CYCGRG	1 cut(s)	1155
BmgT120I	GGNCC	5 cut(s)	64, 478, 647, 1105, 1187
BmiI	GGNNCC	8 cut(s)	337, 501, 573, 648, 671, 1417, 1965, 1986
BmrFI	CCNGG	3 cut(s)	294, 387, 929
BmrI	ACTGGG	2 cut(s)	1892, 1991
BmsI	GCATC	2 cut(s)	1484, 1821
BmtI	GCTAGC	1 cut(s)	2139
BmuI	ACTGGG	2 cut(s)	1892, 1991
BpmI	CTGGAG	3 cut(s)	315, 323, 1959
Bpu10I	CCTNAGC	1 cut(s)	2217
BpuEI	CTTGAG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	161
BsaI	GGTCTC	2 cut(s)	183, 1337
BsaJI	CCNNGG	4 cut(s)	108, 927, 928, 2057
BsaXI	ACNNNNNCTCC	2 cut(s)	1735, 1765
Bsc4I	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1636
Bse1I	ACTGG	5 cut(s)	1898, 1905, 1976, 1997, 2089
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	3 cut(s)	294, 387, 929
BseDI	CCNNGG	4 cut(s)	108, 927, 928, 2057
BseGI	GGATG	4 cut(s)	446, 942, 1570, 1853
BseLI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1636
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	6 cut(s)	420, 581, 1161, 1425, 1626, 2208
BseNI	ACTGG	5 cut(s)	1898, 1905, 1976, 1997, 2089
BseRI	GAGGAG	2 cut(s)	1853, 2313
BseSI	GKGCMC	1 cut(s)	1765
BseX3I	CGGCCG	1 cut(s)	105
BseXI	GCAGC	3 cut(s)	1387, 1435, 1927
Bsh1236I	CGCG	1 cut(s)	58
Bsh1285I	CGRYCG	1 cut(s)	108
BshFI	GGCC	4 cut(s)	107, 258, 1107, 1189
BshNI	GGYRCC	2 cut(s)	571, 669
BsiEI	CGRYCG	1 cut(s)	108
BsiHKAI	GWGCWC	1 cut(s)	1765
BsiHKCI	CYCGRG	1 cut(s)	1155
BsiSI	CCGG	3 cut(s)	101, 117, 153
BslFI	GGGAC	2 cut(s)	660, 1613
BslI	CCNNNNNNNGG	4 cut(s)	73, 247, 933, 1636
BsmAI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BsmFI	GGGAC	2 cut(s)	660, 1613
BsnI	GGCC	4 cut(s)	107, 258, 1107, 1189
Bso31I	GGTCTC	2 cut(s)	183, 1337
BsoBI	CYCGRG	1 cut(s)	1155
Bsp1286I	GDGCHC	2 cut(s)	1765, 2223
Bsp143I	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
Bsp68I	TCGCGA	1 cut(s)	58
BspACI	CCGC	8 cut(s)	43, 87, 104, 120, 150, 1227, 2077, 2133
BspANI	GGCC	4 cut(s)	107, 258, 1107, 1189
BspCNI	CTCAG	6 cut(s)	421, 580, 1162, 1426, 1627, 2209
BspFNI	CGCG	1 cut(s)	58
BspHI	TCATGA	1 cut(s)	1699
BspLI	GGNNCC	8 cut(s)	337, 501, 573, 648, 671, 1417, 1965, 1986
BspMI	ACCTGC	2 cut(s)	749, 1480
BspOI	GCTAGC	1 cut(s)	2139
BspPI	GGATC	5 cut(s)	140, 494, 507, 1505, 1562
BspQI	GCTCTTC	2 cut(s)	776, 1024
BspT107I	GGYRCC	2 cut(s)	571, 669
BspTNI	GGTCTC	2 cut(s)	183, 1337
BsrBI	CCGCTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	5 cut(s)	1898, 1905, 1976, 1997, 2089
BssECI	CCNNGG	4 cut(s)	108, 927, 928, 2057
BssMI	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
BssNI	GRCGYC	1 cut(s)	161
BssSI	CACGAG	1 cut(s)	71
BssT1I	CCWWGG	1 cut(s)	2057
Bst2BI	CACGAG	1 cut(s)	71
Bst2UI	CCWGG	3 cut(s)	294, 387, 929
Bst4CI	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
Bst6I	CTCTTC	4 cut(s)	776, 1024, 1335, 1383
BstACI	GRCGYC	1 cut(s)	161
BstAPI	GCANNNNNTGC	1 cut(s)	792
BstC8I	GCNNGC	5 cut(s)	150, 202, 1521, 1578, 2137
BstDEI	CTNAG	8 cut(s)	429, 567, 754, 1170, 1434, 1635, 2117, 2217
BstF5I	GGATG	4 cut(s)	446, 942, 1570, 1853
BstFNI	CGCG	1 cut(s)	58
BstKTI	GATC	7 cut(s)	135, 502, 846, 1082, 1513, 1570, 2149
BstMAI	GTCTC	7 cut(s)	183, 525, 1017, 1054, 1156, 1312, 1337
BstMBI	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
BstMCI	CGRYCG	1 cut(s)	108
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1901
BstNI	CCWGG	3 cut(s)	294, 387, 929
BstNSI	RCATGY	2 cut(s)	1523, 1580
BstSCI	CCNGG	3 cut(s)	292, 385, 927
BstSFI	CTRYAG	2 cut(s)	1131, 1326
BstSLI	GKGCMC	1 cut(s)	1765
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	3 cut(s)	1387, 1435, 1927
BstX2I	RGATCY	3 cut(s)	132, 499, 2146
BstYI	RGATCY	3 cut(s)	132, 499, 2146
BstZI	CGGCCG	1 cut(s)	105
BsuI	GTATCC	1 cut(s)	1123
BsuRI	GGCC	4 cut(s)	107, 258, 1107, 1189
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	4 cut(s)	446, 942, 1570, 1853
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	5 cut(s)	175, 318, 867, 1765, 2268
BtuMI	TCGCGA	1 cut(s)	58
BveI	ACCTGC	2 cut(s)	749, 1480
Cac8I	GCNNGC	5 cut(s)	150, 202, 1521, 1578, 2137
CciI	TCATGA	1 cut(s)	1699
Cfr13I	GGNCC	5 cut(s)	64, 478, 647, 1105, 1187
CseI	GACGC	1 cut(s)	150
CsiI	ACCWGGT	1 cut(s)	385
Csp6I	GTAC	4 cut(s)	621, 884, 1872, 2082
CspCI	CAANNNNNGTGG	2 cut(s)	307, 342
CviQI	GTAC	4 cut(s)	621, 884, 1872, 2082
DdeI	CTNAG	8 cut(s)	429, 567, 754, 1170, 1434, 1635, 2117, 2217
DpnI	GATC	7 cut(s)	134, 501, 845, 1081, 1512, 1569, 2148
DpnII	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
EaeI	YGGCCR	1 cut(s)	105
EagI	CGGCCG	1 cut(s)	105
Eam1104I	CTCTTC	4 cut(s)	776, 1024, 1335, 1383
EarI	CTCTTC	4 cut(s)	776, 1024, 1335, 1383
EciI	GGCGGA	1 cut(s)	135
EclXI	CGGCCG	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	2057
Eco24I	GRGCYC	1 cut(s)	2223
Eco31I	GGTCTC	2 cut(s)	183, 1337
Eco47I	GGWCC	3 cut(s)	64, 478, 647
Eco52I	CGGCCG	1 cut(s)	105
Eco57I	CTGAAG	4 cut(s)	169, 1407, 1431, 1602
Eco88I	CYCGRG	1 cut(s)	1155
EcoRII	CCWGG	3 cut(s)	292, 385, 927
EcoT14I	CCWWGG	1 cut(s)	2057
EcoT22I	ATGCAT	1 cut(s)	1678
EcoT38I	GRGCYC	1 cut(s)	2223
ErhI	CCWWGG	1 cut(s)	2057
FalI	AAGNNNNNCTT	6 cut(s)	344, 376, 728, 760, 2100, 2132
FaqI	GGGAC	2 cut(s)	660, 1613
FauI	CCCGC	1 cut(s)	157
FauNDI	CATATG	1 cut(s)	463
FbaI	TGATCA	1 cut(s)	843
Fnu4HI	GCNGC	6 cut(s)	43, 88, 105, 1376, 1424, 1941
FokI	GGATG	4 cut(s)	453, 949, 1577, 1840
FriOI	GRGCYC	1 cut(s)	2223
Fsp4HI	GCNGC	6 cut(s)	43, 88, 105, 1376, 1424, 1941
FspBI	CTAG	3 cut(s)	357, 1650, 2136
GluI	GCNGC	6 cut(s)	43, 88, 105, 1376, 1424, 1941
GsuI	CTGGAG	3 cut(s)	315, 323, 1959
HaeIII	GGCC	4 cut(s)	107, 258, 1107, 1189
HapII	CCGG	3 cut(s)	101, 117, 153
HgaI	GACGC	1 cut(s)	150
Hin1I	GRCGYC	1 cut(s)	161
HincII	GTYRAC	2 cut(s)	1951, 2050
HindII	GTYRAC	2 cut(s)	1951, 2050
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	9 cut(s)	69, 212, 923, 986, 1438, 1459, 1886, 1972, 2230
HpaII	CCGG	3 cut(s)	101, 117, 153
HphI	GGTGA	4 cut(s)	16, 151, 1634, 1740
Hpy166II	GTNNAC	5 cut(s)	142, 632, 1763, 1951, 2050
Hpy8I	GTNNAC	5 cut(s)	142, 632, 1763, 1951, 2050
Hpy99I	CGWCG	1 cut(s)	166
HpyCH4III	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
HpyCH4IV	ACGT	1 cut(s)	2066
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1901
HpyF3I	CTNAG	8 cut(s)	429, 567, 754, 1170, 1434, 1635, 2117, 2217
HpySE526I	ACGT	1 cut(s)	2066
Hsp92I	GRCGYC	1 cut(s)	161
Ksp22I	TGATCA	1 cut(s)	843
Kzo9I	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
LguI	GCTCTTC	2 cut(s)	776, 1024
LmnI	GCTCC	3 cut(s)	50, 335, 1549
Lsp1109I	GCAGC	3 cut(s)	1387, 1435, 1927
LweI	GCATC	2 cut(s)	1484, 1821
MabI	ACCWGGT	1 cut(s)	385
MaeI	CTAG	3 cut(s)	357, 1650, 2136
MaeII	ACGT	1 cut(s)	2066
MaeIII	GTNAC	3 cut(s)	172, 1042, 1652
MalI	GATC	7 cut(s)	134, 501, 845, 1081, 1512, 1569, 2148
MbiI	CCGCTC	1 cut(s)	45
MboI	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
MfeI	CAATTG	2 cut(s)	229, 1593
MflI	RGATCY	3 cut(s)	132, 499, 2146
MhlI	GDGCHC	2 cut(s)	1765, 2223
MlyI	GAGTC	5 cut(s)	63, 221, 917, 1966, 2239
MmeI	TCCRAC	5 cut(s)	33, 72, 91, 144, 570
Mph1103I	ATGCAT	1 cut(s)	1678
MroXI	GAANNNNTTC	1 cut(s)	1695
MslI	CAYNNNNRTG	2 cut(s)	486, 1829
MspA1I	CMGCKG	1 cut(s)	653
MspI	CCGG	3 cut(s)	101, 117, 153
MspR9I	CCNGG	3 cut(s)	294, 387, 929
MunI	CAATTG	2 cut(s)	229, 1593
MvaI	CCWGG	3 cut(s)	294, 387, 929
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	6 cut(s)	101, 158, 335, 401, 792, 1901
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
NheI	GCTAGC	1 cut(s)	2135
NlaIV	GGNNCC	8 cut(s)	337, 501, 573, 648, 671, 1417, 1965, 1986
NmeAIII	GCCGAG	1 cut(s)	133
NmuCI	GTSAC	3 cut(s)	172, 1042, 1652
NruI	TCGCGA	1 cut(s)	58
NsiI	ATGCAT	1 cut(s)	1678
NspI	RCATGY	2 cut(s)	1523, 1580
PaeI	GCATGC	2 cut(s)	1523, 1580
PagI	TCATGA	1 cut(s)	1699
PasI	CCCWGGG	1 cut(s)	928
PciSI	GCTCTTC	2 cut(s)	776, 1024
PdmI	GAANNNNTTC	1 cut(s)	1695
PfeI	GAWTC	4 cut(s)	986, 1438, 1459, 1886
PflFI	GACNNNGTC	1 cut(s)	170
PfoI	TCCNGGA	1 cut(s)	292
PkrI	GCNGC	6 cut(s)	44, 89, 106, 1377, 1425, 1942
PleI	GAGTC	5 cut(s)	63, 220, 917, 1966, 2238
PpsI	GAGTC	5 cut(s)	63, 220, 917, 1966, 2238
Psp1406I	AACGTT	1 cut(s)	2066
Psp6I	CCWGG	3 cut(s)	292, 385, 927
PspGI	CCWGG	3 cut(s)	292, 385, 927
PspN4I	GGNNCC	8 cut(s)	337, 501, 573, 648, 671, 1417, 1965, 1986
PspPI	GGNCC	5 cut(s)	64, 478, 647, 1105, 1187
PsuI	RGATCY	3 cut(s)	132, 499, 2146
PsyI	GACNNNGTC	1 cut(s)	170
PvuII	CAGCTG	1 cut(s)	653
RruI	TCGCGA	1 cut(s)	58
RsaI	GTAC	4 cut(s)	622, 885, 1873, 2083
RsaNI	GTAC	4 cut(s)	621, 884, 1872, 2082
RseI	CAYNNNNRTG	2 cut(s)	486, 1829
SapI	GCTCTTC	2 cut(s)	776, 1024
SatI	GCNGC	6 cut(s)	43, 88, 105, 1376, 1424, 1941
Sau3AI	GATC	7 cut(s)	132, 499, 843, 1079, 1510, 1567, 2146
Sau96I	GGNCC	5 cut(s)	64, 478, 647, 1105, 1187
ScaI	AGTACT	1 cut(s)	2083
SchI	GAGTC	5 cut(s)	63, 221, 917, 1966, 2239
ScrFI	CCNGG	3 cut(s)	294, 387, 929
SduI	GDGCHC	2 cut(s)	1765, 2223
SexAI	ACCWGGT	1 cut(s)	385
SfaNI	GCATC	2 cut(s)	1484, 1821
SfcI	CTRYAG	2 cut(s)	1131, 1326
SinI	GGWCC	3 cut(s)	64, 478, 647
SmiMI	CAYNNNNRTG	2 cut(s)	486, 1829
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
SphI	GCATGC	2 cut(s)	1523, 1580
SsiI	CCGC	8 cut(s)	43, 87, 104, 120, 150, 1227, 2077, 2133
SspMI	CTAG	3 cut(s)	357, 1650, 2136
StyD4I	CCNGG	3 cut(s)	292, 385, 927
StyI	CCWWGG	1 cut(s)	2057
TaaI	ACNGT	6 cut(s)	170, 322, 606, 972, 1048, 1150
TaiI	ACGT	1 cut(s)	2069
TaqI	TCGA	3 cut(s)	269, 374, 2310
TatI	WGTACW	2 cut(s)	1871, 2081
TauI	GCSGC	3 cut(s)	45, 90, 107
TfiI	GAWTC	4 cut(s)	986, 1438, 1459, 1886
TscAI	CASTG	5 cut(s)	175, 325, 867, 1765, 2268
TseFI	GTSAC	3 cut(s)	172, 1042, 1652
TseI	GCWGC	3 cut(s)	1375, 1423, 1940
Tsp45I	GTSAC	3 cut(s)	172, 1042, 1652
TspGWI	ACGGA	1 cut(s)	453
TspRI	CASTG	5 cut(s)	175, 325, 867, 1765, 2268
Tth111I	GACNNNGTC	1 cut(s)	170
VneI	GTGCAC	1 cut(s)	1761
VpaK11BI	GGWCC	3 cut(s)	64, 478, 647
XapI	RAATTY	2 cut(s)	593, 712
XceI	RCATGY	2 cut(s)	1523, 1580
XmnI	GAANNNNTTC	1 cut(s)	1695
XspI	CTAG	3 cut(s)	357, 1650, 2136
ZrmI	AGTACT	1 cut(s)	2083
Zsp2I	ATGCAT	1 cut(s)	1678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.