Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

63855994 .. 63856802

Gene Structure 809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG430200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGGAGGCAAGTGCTATCTCATGTATTATCACAACAATTGAAACTTCTGTAGCTGAGAAGGAAGATACCATTTCAAATGTTACTGAAGGAACCGAGCAACTTAAAATTGAGAATCTATCATCAGATGCTTTGAATCCCATAGCACCTACCTCTATCTTGGAAAAGGACAAGTTATTATCAGATGATCCAAAGCATGCAGAACATTCTTTAAATGAAGAAAAGGAGTATTTACTAGCGGATGATCCAAAGCATGCGGAAGATACTTCAATTGCAGAAAAGGATGTTTCTGTGAATGGTGATGGCCCTACTGAGGAAGTTAATCCTAGTGACGATAGCAGTAGCAAATATGCATTGGCTTTAGTTGAAGAAGTTAATGACATCGAGAAGGAAAACAATAACTTCCCAGACAATGAAGCATGGAACCAAACGCCCCAGTTGCTAGCTAGTCAGGATATAAGCCACAGTGATAGTTGGGAGGTTGCAAATGTCAACAACATCGCGGAACCAAAGACCCCAGTTGCCAATCAGGTTATAAAACACAATGACAGAGGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGCAGTACTGGTGTCAAGCAATCTCTTGTTCAAGATTATCTTAGCTTCTTAAACACCCTAGCAAAGAAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

222

Amino Acids

24.26

Weight (kDa)

4.27

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	533
AccII	CGCG	1 cut(s)	500
AciI	CCGC	3 cut(s)	236, 254, 500
AclI	AACGTT	1 cut(s)	584
AclWI	GGATC	2 cut(s)	179, 236
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	1 cut(s)	601
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	6 cut(s)	41, 75, 133, 267, 365, 626
AluBI	AGCT	3 cut(s)	53, 443, 639
AluI	AGCT	3 cut(s)	53, 443, 639
AlwI	GGATC	2 cut(s)	179, 236
AoxI	GGCC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	308
AsuNHI	GCTAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	293
BfaI	CTAG	5 cut(s)	233, 324, 440, 444, 653
BfmI	CTRYAG	2 cut(s)	48, 595
BmcAI	AGTACT	1 cut(s)	601
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	3 cut(s)	91, 422, 504
BmrI	ACTGGG	2 cut(s)	427, 509
BmsI	GCATC	1 cut(s)	115
BmtI	GCTAGC	1 cut(s)	443
BmuI	ACTGGG	2 cut(s)	427, 509
BsaJI	CCNNGG	1 cut(s)	575
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	3 cut(s)	433, 515, 607
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	2 cut(s)	244, 286
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	2 cut(s)	45, 300
BseNI	ACTGG	3 cut(s)	433, 515, 607
Bsh1236I	CGCG	1 cut(s)	500
BshFI	GGCC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	184, 241
BspACI	CCGC	3 cut(s)	236, 254, 500
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	2 cut(s)	46, 301
BspFNI	CGCG	1 cut(s)	500
BspLI	GGNNCC	3 cut(s)	91, 422, 504
BspMAI	CTGCAG	1 cut(s)	599
BspOI	GCTAGC	1 cut(s)	443
BspPI	GGATC	2 cut(s)	179, 236
BsrI	ACTGG	3 cut(s)	433, 515, 607
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	2 cut(s)	184, 241
BssT1I	CCWWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	464
BstC8I	GCNNGC	4 cut(s)	195, 252, 441, 595
BstDEI	CTNAG	3 cut(s)	54, 309, 635
BstF5I	GGATG	2 cut(s)	244, 286
BstFNI	CGCG	1 cut(s)	500
BstKTI	GATC	2 cut(s)	187, 244
BstMBI	GATC	2 cut(s)	184, 241
BstMWI	GCNNNNNNNGC	1 cut(s)	436
BstNSI	RCATGY	2 cut(s)	197, 254
BstSFI	CTRYAG	2 cut(s)	48, 595
BstUI	CGCG	1 cut(s)	500
BsuRI	GGCC	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	244, 286
BtsIMutI	CAGTG	1 cut(s)	469
Cac8I	GCNNGC	4 cut(s)	195, 252, 441, 595
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	600
CviAII	CATG	4 cut(s)	21, 194, 251, 417
CviJI	RGCY	7 cut(s)	53, 303, 356, 443, 459, 573, 639
CviKI_1	RGCY	7 cut(s)	53, 303, 356, 443, 459, 573, 639
CviQI	GTAC	1 cut(s)	600
DdeI	CTNAG	3 cut(s)	54, 309, 635
DpnI	GATC	2 cut(s)	186, 243
DpnII	GATC	2 cut(s)	184, 241
DraI	TTTAAA	1 cut(s)	210
Eco130I	CCWWGG	1 cut(s)	575
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	1 cut(s)	575
FaeI	CATG	4 cut(s)	24, 197, 254, 420
FaiI	YATR	8 cut(s)	22, 140, 195, 252, 348, 418, 455, 533
FalI	AAGNNNNNCTT	2 cut(s)	618, 650
FatI	CATG	4 cut(s)	20, 193, 250, 416
FokI	GGATG	2 cut(s)	251, 293
FspBI	CTAG	5 cut(s)	233, 324, 440, 444, 653
HaeIII	GGCC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	24, 197, 254, 420
HincII	GTYRAC	2 cut(s)	490, 568
HindII	GTYRAC	2 cut(s)	490, 568
HinfI	GANTC	2 cut(s)	112, 133
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	2 cut(s)	490, 568
Hpy188I	TCNGA	2 cut(s)	124, 181
Hpy188III	TCNNGA	3 cut(s)	382, 449, 626
Hpy8I	GTNNAC	2 cut(s)	490, 568
HpyAV	CCTTC	3 cut(s)	52, 80, 379
HpyCH4III	ACNGT	1 cut(s)	464
HpyCH4IV	ACGT	1 cut(s)	584
HpyCH4V	TGCA	6 cut(s)	197, 272, 350, 482, 560, 597
HpyF10VI	GCNNNNNNNGC	1 cut(s)	436
HpyF3I	CTNAG	3 cut(s)	54, 309, 635
HpySE526I	ACGT	1 cut(s)	584
Hsp92II	CATG	4 cut(s)	24, 197, 254, 420
Kzo9I	GATC	2 cut(s)	184, 241
LpnPI	CCDG	7 cut(s)	417, 434, 446, 512, 528, 588, 607
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	5 cut(s)	233, 324, 440, 444, 653
MaeII	ACGT	1 cut(s)	584
MaeIII	GTNAC	2 cut(s)	79, 326
MalI	GATC	2 cut(s)	186, 243
MboI	GATC	2 cut(s)	184, 241
MboII	GAAGA	4 cut(s)	74, 227, 269, 377
MfeI	CAATTG	2 cut(s)	36, 267
MluCI	AATT	3 cut(s)	36, 105, 267
MnlI	CCTC	5 cut(s)	160, 304, 469, 542, 547
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	5 cut(s)	102, 209, 318, 372, 644
MunI	CAATTG	2 cut(s)	36, 267
MvnI	CGCG	1 cut(s)	500
MwoI	GCNNNNNNNGC	1 cut(s)	436
NdeII	GATC	2 cut(s)	184, 241
NheI	GCTAGC	1 cut(s)	439
NlaIII	CATG	4 cut(s)	24, 197, 254, 420
NlaIV	GGNNCC	3 cut(s)	91, 422, 504
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	197, 254
PaeI	GCATGC	2 cut(s)	197, 254
PfeI	GAWTC	2 cut(s)	112, 133
PsiI	TTATAA	1 cut(s)	533
Psp1406I	AACGTT	1 cut(s)	584
PspN4I	GGNNCC	3 cut(s)	91, 422, 504
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	1 cut(s)	599
RsaI	GTAC	1 cut(s)	601
RsaNI	GTAC	1 cut(s)	600
SaqAI	TTAA	5 cut(s)	102, 209, 318, 372, 644
Sau3AI	GATC	2 cut(s)	184, 241
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	1 cut(s)	601
SetI	ASST	9 cut(s)	55, 148, 152, 445, 480, 531, 558, 587, 641
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	2 cut(s)	48, 595
SphI	GCATGC	2 cut(s)	197, 254
Sse9I	AATT	3 cut(s)	36, 105, 267
SsiI	CCGC	3 cut(s)	236, 254, 500
SspMI	CTAG	5 cut(s)	233, 324, 440, 444, 653
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	464
TaiI	ACGT	1 cut(s)	587
TaqI	TCGA	1 cut(s)	381
TasI	AATT	3 cut(s)	36, 105, 267
TatI	WGTACW	1 cut(s)	599
TfiI	GAWTC	2 cut(s)	112, 133
Tru1I	TTAA	5 cut(s)	102, 209, 318, 372, 644
Tru9I	TTAA	5 cut(s)	102, 209, 318, 372, 644
TscAI	CASTG	1 cut(s)	469
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	2 cut(s)	228, 426
TspRI	CASTG	1 cut(s)	469
XceI	RCATGY	2 cut(s)	197, 254
XspI	CTAG	5 cut(s)	233, 324, 440, 444, 653
ZrmI	AGTACT	1 cut(s)	601
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.