Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Forward (+)

51182896 .. 51184806

Gene Structure 1911 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0405100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGACTTTCAAGCGCAGGAATGGCGGCCGCAACAAGCACGGCCGCGGCCACACCAAGTTCATCCGCTGCTCCAACTGCGGCAAGTGCTGCCCTAAGGACAAGGCTATCAAGAGGTTCTTGGTGAGGAACATCGTGGAGCAAGCTGCGGTGAGAGATGTGCAGGAGGCTTGTGTCTATGAGCAATACACTCTGCCGAAGCTGTATGCTAAGATGCAGTACTGTGTGTCCTGTGCTATTCACTCTCACGTTGTGAGGGTTAGGTCTCGCACCAACAGGAGGAACCGTGAGCCTCCACAGAGATTCATCAGACGCAGGGATGATGCCCCAAGGCCTGGAGCACCTGGTCAGGGGCCCCGACCTGCTGGAGCTGGTGCTCCTGCTCGTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

129

Amino Acids

14.7

Weight (kDa)

11.05

Isoelectric Point (pI)

65.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S26e	PF01283	1 - 106	5.7e-54	Ribosomal protein S26e

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	367
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccII	CGCG	1 cut(s)	45
AciI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
AcoI	YGGCCR	3 cut(s)	25, 40, 46
AdeI	CACNNNGTG	1 cut(s)	250
AfaI	GTAC	2 cut(s)	218, 385
AfiI	CCNNNNNNNGG	3 cut(s)	276, 332, 347
AgsI	TTSAA	1 cut(s)	10
AjnI	CCWGG	2 cut(s)	331, 340
AluBI	AGCT	3 cut(s)	143, 199, 368
AluI	AGCT	3 cut(s)	143, 199, 368
Alw21I	GWGCWC	2 cut(s)	340, 376
Alw26I	GTCTC	1 cut(s)	267
AoxI	GGCC	5 cut(s)	25, 40, 46, 329, 350
ApaI	GGGCCC	1 cut(s)	354
ApeKI	GCWGC	3 cut(s)	66, 87, 143
AspLEI	GCGC	1 cut(s)	15
AspS9I	GGNCC	2 cut(s)	350, 351
AsuHPI	GGTGA	2 cut(s)	133, 160
AxyI	CCTNAGG	1 cut(s)	93
BaeGI	GKGCMC	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	354
Bbv12I	GWGCWC	2 cut(s)	340, 376
BbvI	GCAGC	3 cut(s)	53, 74, 130
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	333, 342
BcoDI	GTCTC	1 cut(s)	267
BfuAI	ACCTGC	1 cut(s)	367
BisI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
BlsI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	2 cut(s)	333, 342
BmgT120I	GGNCC	2 cut(s)	350, 351
BmiI	GGNNCC	4 cut(s)	281, 351, 352, 353
BmrFI	CCNGG	2 cut(s)	333, 342
BmsI	GCATC	2 cut(s)	201, 310
BpmI	CTGGAG	2 cut(s)	354, 384
BsaI	GGTCTC	1 cut(s)	267
BsaJI	CCNNGG	2 cut(s)	43, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	268, 298
Bsc4I	CCNNNNNNNGG	3 cut(s)	276, 332, 347
Bse21I	CCTNAGG	1 cut(s)	93
BseBI	CCWGG	2 cut(s)	333, 342
BseDI	CCNNGG	2 cut(s)	43, 326
BseGI	GGATG	2 cut(s)	60, 322
BseLI	CCNNNNNNNGG	3 cut(s)	276, 332, 347
BseSI	GKGCMC	1 cut(s)	354
BseX3I	CGGCCG	2 cut(s)	25, 40
BseXI	GCAGC	3 cut(s)	53, 74, 130
BsgI	GTGCAG	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	45
Bsh1285I	CGRYCG	2 cut(s)	28, 43
BshFI	GGCC	5 cut(s)	27, 42, 48, 331, 352
BsiEI	CGRYCG	2 cut(s)	28, 43
BsiHKAI	GWGCWC	2 cut(s)	340, 376
BslI	CCNNNNNNNGG	3 cut(s)	276, 332, 347
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	5 cut(s)	27, 42, 48, 331, 352
Bso31I	GGTCTC	1 cut(s)	267
Bsp120I	GGGCCC	1 cut(s)	350
Bsp1286I	GDGCHC	3 cut(s)	340, 354, 376
BspACI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
BspANI	GGCC	5 cut(s)	27, 42, 48, 331, 352
BspFNI	CGCG	1 cut(s)	45
BspLI	GGNNCC	4 cut(s)	281, 351, 352, 353
BspMI	ACCTGC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	267
BssECI	CCNNGG	2 cut(s)	43, 326
BssT1I	CCWWGG	1 cut(s)	326
Bst2UI	CCWGG	2 cut(s)	333, 342
Bst4CI	ACNGT	2 cut(s)	221, 284
BstAPI	GCANNNNNTGC	1 cut(s)	87
BstC8I	GCNNGC	1 cut(s)	141
BstDEI	CTNAG	2 cut(s)	93, 207
BstDSI	CCRYGG	1 cut(s)	43
BstF5I	GGATG	2 cut(s)	60, 322
BstFNI	CGCG	1 cut(s)	45
BstHHI	GCGC	1 cut(s)	15
BstMAI	GTCTC	1 cut(s)	267
BstMCI	CGRYCG	2 cut(s)	28, 43
BstMWI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
BstNI	CCWGG	2 cut(s)	333, 342
BstSCI	CCNGG	2 cut(s)	331, 340
BstSLI	GKGCMC	1 cut(s)	354
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	53, 74, 130
BstZI	CGGCCG	2 cut(s)	25, 40
Bsu36I	CCTNAGG	1 cut(s)	93
BsuRI	GGCC	5 cut(s)	27, 42, 48, 331, 352
BtgI	CCRYGG	1 cut(s)	43
BtsCI	GGATG	2 cut(s)	60, 322
BveI	ACCTGC	1 cut(s)	367
Cac8I	GCNNGC	1 cut(s)	141
CciNI	GCGGCCGC	1 cut(s)	25
CfoI	GCGC	1 cut(s)	15
Cfr13I	GGNCC	2 cut(s)	350, 351
Cfr42I	CCGCGG	1 cut(s)	46
CseI	GACGC	1 cut(s)	318
CsiI	ACCWGGT	1 cut(s)	340
Csp6I	GTAC	2 cut(s)	217, 384
CviQI	GTAC	2 cut(s)	217, 384
DdeI	CTNAG	2 cut(s)	93, 207
DraIII	CACNNNGTG	1 cut(s)	250
EaeI	YGGCCR	3 cut(s)	25, 40, 46
EagI	CGGCCG	2 cut(s)	25, 40
EclXI	CGGCCG	2 cut(s)	25, 40
Eco130I	CCWWGG	1 cut(s)	326
Eco147I	AGGCCT	1 cut(s)	331
Eco24I	GRGCYC	1 cut(s)	354
Eco31I	GGTCTC	1 cut(s)	267
Eco52I	CGGCCG	2 cut(s)	25, 40
Eco81I	CCTNAGG	1 cut(s)	93
EcoO109I	RGGNCCY	2 cut(s)	350, 351
EcoRII	CCWGG	2 cut(s)	331, 340
EcoT14I	CCWWGG	1 cut(s)	326
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	1 cut(s)	326
FaiI	YATR	2 cut(s)	177, 204
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
Fnu4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
FokI	GGATG	2 cut(s)	47, 329
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
GsuI	CTGGAG	2 cut(s)	354, 384
HaeIII	GGCC	5 cut(s)	27, 42, 48, 331, 352
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	15
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HinfI	GANTC	1 cut(s)	300
HphI	GGTGA	2 cut(s)	133, 160
Hpy188I	TCNGA	1 cut(s)	308
Hpy188III	TCNNGA	1 cut(s)	109
HpyCH4III	ACNGT	2 cut(s)	221, 284
HpyCH4IV	ACGT	1 cut(s)	246
HpyCH4V	TGCA	2 cut(s)	160, 214
HpyF10VI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
HpyF3I	CTNAG	2 cut(s)	93, 207
HpySE526I	ACGT	1 cut(s)	246
HspAI	GCGC	1 cut(s)	13
KspI	CCGCGG	1 cut(s)	46
LmnI	GCTCC	5 cut(s)	74, 136, 335, 365, 379
Lsp1109I	GCAGC	3 cut(s)	53, 74, 130
LweI	GCATC	2 cut(s)	201, 310
MabI	ACCWGGT	1 cut(s)	340
MaeII	ACGT	1 cut(s)	246
MhlI	GDGCHC	3 cut(s)	340, 354, 376
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	6 cut(s)	105, 117, 157, 246, 270, 300
MspA1I	CMGCKG	2 cut(s)	45, 66
MspR9I	CCNGG	2 cut(s)	333, 342
MvaI	CCWGG	2 cut(s)	333, 342
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	4 cut(s)	21, 75, 84, 87
NlaIV	GGNNCC	4 cut(s)	281, 351, 352, 353
NotI	GCGGCCGC	1 cut(s)	25
PceI	AGGCCT	1 cut(s)	331
PfeI	GAWTC	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	8 cut(s)	26, 29, 44, 47, 68, 80, 89, 145
Psp6I	CCWGG	2 cut(s)	331, 340
PspGI	CCWGG	2 cut(s)	331, 340
PspN4I	GGNNCC	4 cut(s)	281, 351, 352, 353
PspOMI	GGGCCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	350, 351
RsaI	GTAC	2 cut(s)	218, 385
RsaNI	GTAC	2 cut(s)	217, 384
SacII	CCGCGG	1 cut(s)	46
SatI	GCNGC	8 cut(s)	25, 28, 43, 46, 67, 79, 88, 144
Sau96I	GGNCC	2 cut(s)	350, 351
ScaI	AGTACT	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	333, 342
SduI	GDGCHC	3 cut(s)	340, 354, 376
SetI	ASST	8 cut(s)	116, 145, 201, 249, 263, 343, 361, 370
SexAI	ACCWGGT	1 cut(s)	340
SfaNI	GCATC	2 cut(s)	201, 310
Sfr303I	CCGCGG	1 cut(s)	46
SgrBI	CCGCGG	1 cut(s)	46
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	7 cut(s)	24, 28, 43, 45, 64, 78, 146
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	2 cut(s)	331, 340
StyI	CCWWGG	1 cut(s)	326
TaaI	ACNGT	2 cut(s)	221, 284
TaiI	ACGT	1 cut(s)	249
TatI	WGTACW	1 cut(s)	216
TauI	GCSGC	5 cut(s)	27, 30, 45, 48, 81
TfiI	GAWTC	1 cut(s)	300
TseI	GCWGC	3 cut(s)	66, 87, 143
TspDTI	ATGAA	2 cut(s)	49, 292
Van91I	CCANNNNNTGG	1 cut(s)	332
ZrmI	AGTACT	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.