Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

62167131 .. 62168974

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG439200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGAGGCAAGTGCTATCTCAGGTATTATCACAACAATTGAAACTTCTGTAGCTGAGAAGGAAGATACCATTTCAAATGTTACTGAAGGAACCGAGCAACTTAAAATTGAGAATCTATCATCAGATGCTTTGAATCCCATAGCACCTACCTCTATCTTGGAAAAGGACGAGTTATTATCAGATGATCCAAAGCATGCAGAACATTCTTTAAATGAAGAAAAGGAGTATTTACTAGCGGATGATCCAAAGCATGCGGAAGATACTTCAATTGCAGAAAAGGATGTTTCTGTGAATGGTGATGGCCCTACTGAGGAAGTTAATCCTAGTGACAATAGCAGTAGCAAATATGCATTGGCTTTAGTTGAAGAAGATATAAGCCACAGTGATAGTTGGGAGGTTGCAAATGTCAACAACATCGCGGAACCAAAGACCCCAGTTGCCAATCAGGTTATAAAACACAATGACAGAGGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGCAGTACTGGAGGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGCAGTACTGGTGTCAAGCAATCTCTTCAAAGAAGATTTGAAAAGATTAAAGGGAATTGCAGAGAAAAGAGCAACATATTCAAAGTCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

220

Amino Acids

23.8

Weight (kDa)

4.47

Isoelectric Point (pI)

42.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	452
AccII	CGCG	1 cut(s)	419
AciI	CCGC	3 cut(s)	236, 254, 419
AclI	AACGTT	2 cut(s)	503, 560
AclWI	GGATC	2 cut(s)	179, 236
AcuI	CTGAAG	1 cut(s)	105
AfaI	GTAC	2 cut(s)	520, 577
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	8 cut(s)	41, 75, 133, 267, 365, 599, 611, 652
AluBI	AGCT	1 cut(s)	53
AluI	AGCT	1 cut(s)	53
AlwI	GGATC	2 cut(s)	179, 236
AoxI	GGCC	1 cut(s)	301
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	1 cut(s)	308
BccI	CCATC	1 cut(s)	293
BfaI	CTAG	2 cut(s)	233, 324
BfmI	CTRYAG	3 cut(s)	48, 514, 571
BmcAI	AGTACT	2 cut(s)	520, 577
BmgT120I	GGNCC	1 cut(s)	302
BmiI	GGNNCC	2 cut(s)	91, 423
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	115
BmuI	ACTGGG	1 cut(s)	428
BpmI	CTGGAG	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	494, 551
BsaXI	ACNNNNNCTCC	2 cut(s)	516, 546
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	3 cut(s)	434, 526, 583
BseDI	CCNNGG	2 cut(s)	494, 551
BseGI	GGATG	2 cut(s)	244, 286
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMII	CTCAG	3 cut(s)	33, 45, 300
BseNI	ACTGG	3 cut(s)	434, 526, 583
Bsh1236I	CGCG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	303
Bsp143I	GATC	2 cut(s)	184, 241
BspACI	CCGC	3 cut(s)	236, 254, 419
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	3 cut(s)	32, 46, 301
BspFNI	CGCG	1 cut(s)	419
BspLI	GGNNCC	2 cut(s)	91, 423
BspMAI	CTGCAG	2 cut(s)	518, 575
BspPI	GGATC	2 cut(s)	179, 236
BsrI	ACTGG	3 cut(s)	434, 526, 583
BssECI	CCNNGG	2 cut(s)	494, 551
BssMI	GATC	2 cut(s)	184, 241
BssT1I	CCWWGG	2 cut(s)	494, 551
Bst4CI	ACNGT	1 cut(s)	383
Bst6I	CTCTTC	1 cut(s)	600
BstC8I	GCNNGC	4 cut(s)	195, 252, 514, 571
BstDEI	CTNAG	3 cut(s)	19, 54, 309
BstF5I	GGATG	2 cut(s)	244, 286
BstFNI	CGCG	1 cut(s)	419
BstKTI	GATC	2 cut(s)	187, 244
BstMBI	GATC	2 cut(s)	184, 241
BstNSI	RCATGY	2 cut(s)	197, 254
BstSFI	CTRYAG	3 cut(s)	48, 514, 571
BstUI	CGCG	1 cut(s)	419
BsuRI	GGCC	1 cut(s)	303
BtgZI	GCGATG	1 cut(s)	400
BtsCI	GGATG	2 cut(s)	244, 286
BtsIMutI	CAGTG	1 cut(s)	388
Cac8I	GCNNGC	4 cut(s)	195, 252, 514, 571
Cfr13I	GGNCC	1 cut(s)	302
Csp6I	GTAC	2 cut(s)	519, 576
CviAII	CATG	2 cut(s)	194, 251
CviJI	RGCY	6 cut(s)	53, 303, 356, 378, 492, 549
CviKI_1	RGCY	6 cut(s)	53, 303, 356, 378, 492, 549
CviQI	GTAC	2 cut(s)	519, 576
DdeI	CTNAG	3 cut(s)	19, 54, 309
DpnI	GATC	2 cut(s)	186, 243
DpnII	GATC	2 cut(s)	184, 241
DraI	TTTAAA	1 cut(s)	210
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
Eco130I	CCWWGG	2 cut(s)	494, 551
Eco57I	CTGAAG	1 cut(s)	105
EcoT14I	CCWWGG	2 cut(s)	494, 551
EcoT22I	ATGCAT	1 cut(s)	352
ErhI	CCWWGG	2 cut(s)	494, 551
FaeI	CATG	2 cut(s)	197, 254
FaiI	YATR	7 cut(s)	140, 195, 252, 348, 374, 452, 647
FatI	CATG	2 cut(s)	193, 250
FokI	GGATG	2 cut(s)	251, 293
FspBI	CTAG	2 cut(s)	233, 324
GsuI	CTGGAG	1 cut(s)	543
HaeIII	GGCC	1 cut(s)	303
Hin1II	CATG	2 cut(s)	197, 254
HincII	GTYRAC	3 cut(s)	409, 487, 544
HindII	GTYRAC	3 cut(s)	409, 487, 544
HinfI	GANTC	2 cut(s)	112, 133
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	3 cut(s)	409, 487, 544
Hpy188I	TCNGA	2 cut(s)	124, 181
Hpy8I	GTNNAC	3 cut(s)	409, 487, 544
HpyAV	CCTTC	2 cut(s)	52, 80
HpyCH4III	ACNGT	1 cut(s)	383
HpyCH4IV	ACGT	2 cut(s)	503, 560
HpyCH4V	TGCA	9 cut(s)	197, 272, 350, 401, 479, 516, 536, 573, 630
HpyF3I	CTNAG	3 cut(s)	19, 54, 309
HpySE526I	ACGT	2 cut(s)	503, 560
Hsp92II	CATG	2 cut(s)	197, 254
Kzo9I	GATC	2 cut(s)	184, 241
LpnPI	CCDG	7 cut(s)	6, 431, 447, 507, 526, 564, 583
LweI	GCATC	1 cut(s)	115
MaeI	CTAG	2 cut(s)	233, 324
MaeII	ACGT	2 cut(s)	503, 560
MaeIII	GTNAC	2 cut(s)	79, 326
MalI	GATC	2 cut(s)	186, 243
MboI	GATC	2 cut(s)	184, 241
MboII	GAAGA	7 cut(s)	74, 227, 269, 377, 380, 587, 615
MfeI	CAATTG	2 cut(s)	36, 267
MluCI	AATT	4 cut(s)	36, 105, 267, 625
MnlI	CCTC	7 cut(s)	160, 304, 388, 461, 466, 518, 523
Mph1103I	ATGCAT	1 cut(s)	352
MseI	TTAA	4 cut(s)	102, 209, 318, 618
MunI	CAATTG	2 cut(s)	36, 267
MvnI	CGCG	1 cut(s)	419
NdeII	GATC	2 cut(s)	184, 241
NlaIII	CATG	2 cut(s)	197, 254
NlaIV	GGNNCC	2 cut(s)	91, 423
NmuCI	GTSAC	1 cut(s)	326
NsiI	ATGCAT	1 cut(s)	352
NspI	RCATGY	2 cut(s)	197, 254
PaeI	GCATGC	2 cut(s)	197, 254
PfeI	GAWTC	2 cut(s)	112, 133
PsiI	TTATAA	1 cut(s)	452
Psp1406I	AACGTT	2 cut(s)	503, 560
PspN4I	GGNNCC	2 cut(s)	91, 423
PspPI	GGNCC	1 cut(s)	302
PstI	CTGCAG	2 cut(s)	518, 575
RsaI	GTAC	2 cut(s)	520, 577
RsaNI	GTAC	2 cut(s)	519, 576
SaqAI	TTAA	4 cut(s)	102, 209, 318, 618
Sau3AI	GATC	2 cut(s)	184, 241
Sau96I	GGNCC	1 cut(s)	302
ScaI	AGTACT	2 cut(s)	520, 577
SfaNI	GCATC	1 cut(s)	115
SfcI	CTRYAG	3 cut(s)	48, 514, 571
SphI	GCATGC	2 cut(s)	197, 254
Sse9I	AATT	4 cut(s)	36, 105, 267, 625
SsiI	CCGC	3 cut(s)	236, 254, 419
SspMI	CTAG	2 cut(s)	233, 324
StyI	CCWWGG	2 cut(s)	494, 551
TaaI	ACNGT	1 cut(s)	383
TaiI	ACGT	2 cut(s)	506, 563
TasI	AATT	4 cut(s)	36, 105, 267, 625
TatI	WGTACW	2 cut(s)	518, 575
TfiI	GAWTC	2 cut(s)	112, 133
Tru1I	TTAA	4 cut(s)	102, 209, 318, 618
Tru9I	TTAA	4 cut(s)	102, 209, 318, 618
TscAI	CASTG	1 cut(s)	388
TseFI	GTSAC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	1 cut(s)	228
TspRI	CASTG	1 cut(s)	388
XceI	RCATGY	2 cut(s)	197, 254
XspI	CTAG	2 cut(s)	233, 324
ZrmI	AGTACT	2 cut(s)	520, 577
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.