Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Reverse (-)

57887287 .. 57892811

Gene Structure 5525 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G035140.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

ATGATAACCGTGACAGAGGAATTTGAAGAAAATGATGAATGGCATGGCAACTGCAACGGAGGCGAGACAGCGGGAAGAAGAACAGAAATGGATAGTGGACAGCAGTCATCGCGGCATTCTGATAATGCAATTTGGTTTTACACAAGTGAATCCGCTCCAACAATTGCTATTCAAGGTTGGTTAATTTCAAACCTTGAGAAAAACCACTATTCAATTACTATATCCTCGTATGAGGTTTATCAGGACCACATTTACGATATATTGGCTCCATCACGCCCAGAAGTTTTGGTACTGGGAGACACTCAAGTAAACATTCGGCGTAAAGGACTTTCGCAGGTGTGCCACAAGGGATTGATAGTCTATGTATCATCTCGAAGCTATGAAGATAGAAGAAGAAAGAGCATTGATTGTGGTAATCATTTTGAAAGCAGAAAAATCATCAATTCCAATGGAAACCATGTGCCTTATCGGGAAAGCAAACTCACACACTTATTGCAAGACTCCCTGGGAGGGATGAGTAGAGTTTTGATGATCATTAGCTTGAAACCGTCATTTTGCCAAGATTCCATTTACATGGTAAGCTTGGTGTCTCGCTCTTGTCAAAACACCAATCAGGCTGTCACAGTCTCAACAAAGAAAAGTAAAGGTCTGACAAGATCAGAAGTGCGTTCATCAGATAAGGGCCATATATCCAGTTCTAAAGCAAAGAAACAAATAGTCTCCCGAGTGCCTCTTTCTGAGAAGAAAGTTAATGGGCCTCTTTCTTGCAAGAAAGCAAATAGTAGTCCGACTTCTGCATTGAAAAGAAGGAAACTATTTGATGAAAGAAGGCGTTTGACCAAATTGATGGAGGCAAGTGCTATCTCAGGTATTATCACAACAATTGAAACTTCTGTAGCTGAGAAGGAAGATACCATTTCAAATGTTACTGAAGGAACCGAGCAACTTAAAATTGAGAATCTATCATCAGATGCTTTGAATCCCATAGCACCTACCTCTATCTTGGAAAAGGACGAGTTATTATCAGATGATCCAAAGCATGCAGAACATTCTTTAAATGAAGAAAAGGAGTATTTACTAGCGGATGATCCAAAGCATGCGGAAGATACTTCAATTGCAGAAAAGGATGTTTCTGTGAATGGTGATGGCCCTACTGAGGAAGTTAATCCTAGTGATAATAGCAGTAGCAAATATGCATTGGCTTTAGTTGAAGAAGTTAATGACATCGAGAAGGAAAACAATAACTTCCCAGACAATGAAGGTGCATCACCCCCAATCAGTGAACGATTACAAGAATTGGCATTAAAAATGAAATCACTTTATATTTCATCCAATAACTTCCTCTGTACTGACAGCATGGAACCAAACGCCCCAGTTGCTAGCTATTGCCAATCAGGTTATAAATTAAAACACAATGACAGAGGGGAGGTTGCAAATGTCAACAGCCCTTGGGAAACGTTGAGTGCCTGCAGTACTGGTCTTCGTAAACACCCTAGCAAAGAAGATTTGAAAAGATTAAAGGGAATTGCAGAGAAAAGAGCAACATCAACATGTATGCTTGATTGCCGTGAAGAAACTCCTGAGGCCTTCAAGAGTCTTGATGATTTAGAAGACATTGGACTTTCAGTGAAGCAGATTAAGAACTTGATGAAGAAAGCAGGAGGAGGGCTATTGATGTTTTGGAGAATCTCCTTTCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

566

Amino Acids

63.03

Weight (kDa)

5.96

Isoelectric Point (pI)

56.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Kinesin	PF00225	149 - 184	5.1e-11	Kinesin motor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1401
AarI	CACCTGC	1 cut(s)	325
Acc36I	ACCTGC	1 cut(s)	325
AccBSI	CCGCTC	1 cut(s)	155
AccII	CGCG	1 cut(s)	112
AciI	CCGC	5 cut(s)	71, 112, 153, 1082, 1100
AclI	AACGTT	1 cut(s)	1457
AclWI	GGATC	2 cut(s)	1025, 1082
AcsI	RAATTY	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	951
AfaI	GTAC	3 cut(s)	291, 1348, 1474
AfiI	CCNNNNNNNGG	2 cut(s)	510, 1156
AflIII	ACRYGT	1 cut(s)	1550
AjnI	CCWGG	1 cut(s)	504
AluBI	AGCT	5 cut(s)	378, 540, 582, 899, 1383
AluI	AGCT	5 cut(s)	378, 540, 582, 899, 1383
Alw26I	GTCTC	5 cut(s)	59, 291, 594, 631, 724
AlwI	GGATC	2 cut(s)	1025, 1082
Ama87I	CYCGRG	1 cut(s)	723
AoxI	GGCC	4 cut(s)	682, 755, 1147, 1584
ApoI	RAATTY	1 cut(s)	20
AspS9I	GGNCC	4 cut(s)	244, 682, 755, 1148
AsuHPI	GGTGA	2 cut(s)	1154, 1260
AsuNHI	GCTAGC	1 cut(s)	1379
AvaI	CYCGRG	1 cut(s)	723
AvaII	GGWCC	1 cut(s)	244
AxyI	CCTNAGG	1 cut(s)	1581
BarI	GAAGNNNNNNTAC	4 cut(s)	273, 305, 775, 807
BbsI	GAAGAC	2 cut(s)	1472, 1617
BccI	CCATC	3 cut(s)	277, 841, 1139
BceAI	ACGGC	1 cut(s)	1551
BciT130I	CCWGG	1 cut(s)	506
BclI	TGATCA	1 cut(s)	531
BcoDI	GTCTC	5 cut(s)	59, 291, 594, 631, 724
BfaI	CTAG	4 cut(s)	1079, 1170, 1380, 1494
BfmI	CTRYAG	2 cut(s)	894, 1468
BfuAI	ACCTGC	1 cut(s)	325
BisI	GCNGC	1 cut(s)	113
BlsI	GCNGC	1 cut(s)	114
BmcAI	AGTACT	1 cut(s)	1474
Bme1390I	CCNGG	1 cut(s)	506
Bme18I	GGWCC	1 cut(s)	244
BmeT110I	CYCGRG	1 cut(s)	723
BmgT120I	GGNCC	4 cut(s)	244, 682, 755, 1148
BmiI	GGNNCC	3 cut(s)	267, 937, 1362
BmrFI	CCNGG	1 cut(s)	506
BmrI	ACTGGG	2 cut(s)	302, 1367
BmsI	GCATC	2 cut(s)	961, 1274
BmtI	GCTAGC	1 cut(s)	1383
BmuI	ACTGGG	2 cut(s)	302, 1367
BoxI	GACNNNNGTC	1 cut(s)	103
BpiI	GAAGAC	2 cut(s)	1472, 1617
BpuEI	CTTGAG	2 cut(s)	215, 288
BsaJI	CCNNGG	3 cut(s)	504, 505, 1448
Bsc4I	CCNNNNNNNGG	2 cut(s)	510, 1156
Bse1I	ACTGG	4 cut(s)	297, 693, 1373, 1480
Bse21I	CCTNAGG	1 cut(s)	1581
BseBI	CCWGG	1 cut(s)	506
BseDI	CCNNGG	3 cut(s)	504, 505, 1448
BseGI	GGATG	4 cut(s)	519, 1090, 1132, 1328
BseLI	CCNNNNNNNGG	2 cut(s)	510, 1156
BseMII	CTCAG	5 cut(s)	729, 879, 891, 1146, 1572
BseNI	ACTGG	4 cut(s)	297, 693, 1373, 1480
BseRI	GAGGAG	1 cut(s)	1677
Bsh1236I	CGCG	1 cut(s)	112
BshFI	GGCC	4 cut(s)	684, 757, 1149, 1586
BsiHKCI	CYCGRG	1 cut(s)	723
BslI	CCNNNNNNNGG	2 cut(s)	510, 1156
BsmAI	GTCTC	5 cut(s)	59, 291, 594, 631, 724
BsmI	GAATGC	1 cut(s)	115
BsnI	GGCC	4 cut(s)	684, 757, 1149, 1586
BsoBI	CYCGRG	1 cut(s)	723
Bsp143I	GATC	4 cut(s)	531, 656, 1030, 1087
BspACI	CCGC	5 cut(s)	71, 112, 153, 1082, 1100
BspANI	GGCC	4 cut(s)	684, 757, 1149, 1586
BspCNI	CTCAG	5 cut(s)	730, 878, 892, 1147, 1573
BspFNI	CGCG	1 cut(s)	112
BspLI	GGNNCC	3 cut(s)	267, 937, 1362
BspMAI	CTGCAG	1 cut(s)	1472
BspMI	ACCTGC	1 cut(s)	325
BspOI	GCTAGC	1 cut(s)	1383
BspPI	GGATC	2 cut(s)	1025, 1082
BsrBI	CCGCTC	1 cut(s)	155
BsrI	ACTGG	4 cut(s)	297, 693, 1373, 1480
BssECI	CCNNGG	3 cut(s)	504, 505, 1448
BssMI	GATC	4 cut(s)	531, 656, 1030, 1087
BssT1I	CCWWGG	1 cut(s)	1448
Bst2UI	CCWGG	1 cut(s)	506
Bst4CI	ACNGT	3 cut(s)	10, 549, 625
BstC8I	GCNNGC	4 cut(s)	1041, 1098, 1381, 1468
BstDEI	CTNAG	5 cut(s)	738, 865, 900, 1155, 1581
BstF5I	GGATG	4 cut(s)	519, 1090, 1132, 1328
BstFNI	CGCG	1 cut(s)	112
BstKTI	GATC	4 cut(s)	534, 659, 1033, 1090
BstMAI	GTCTC	5 cut(s)	59, 291, 594, 631, 724
BstMBI	GATC	4 cut(s)	531, 656, 1030, 1087
BstMWI	GCNNNNNNNGC	3 cut(s)	60, 109, 1376
BstNI	CCWGG	1 cut(s)	506
BstNSI	RCATGY	3 cut(s)	1043, 1100, 1554
BstPAI	GACNNNNGTC	1 cut(s)	103
BstSCI	CCNGG	1 cut(s)	504
BstSFI	CTRYAG	2 cut(s)	894, 1468
BstUI	CGCG	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	1472, 1617
BstXI	CCANNNNNNTGG	2 cut(s)	574, 847
Bsu36I	CCTNAGG	1 cut(s)	1581
BsuRI	GGCC	4 cut(s)	684, 757, 1149, 1586
BtgZI	GCGATG	1 cut(s)	93
BtsCI	GGATG	4 cut(s)	519, 1090, 1132, 1328
BtsIMutI	CAGTG	2 cut(s)	1285, 1632
BveI	ACCTGC	1 cut(s)	325
Cac8I	GCNNGC	4 cut(s)	1041, 1098, 1381, 1468
Cfr13I	GGNCC	4 cut(s)	244, 682, 755, 1148
Csp6I	GTAC	3 cut(s)	290, 1347, 1473
CviAII	CATG	7 cut(s)	44, 458, 574, 1040, 1097, 1357, 1551
CviQI	GTAC	3 cut(s)	290, 1347, 1473
DdeI	CTNAG	5 cut(s)	738, 865, 900, 1155, 1581
DpnI	GATC	4 cut(s)	533, 658, 1032, 1089
DpnII	GATC	4 cut(s)	531, 656, 1030, 1087
DraI	TTTAAA	1 cut(s)	1056
Eco130I	CCWWGG	1 cut(s)	1448
Eco147I	AGGCCT	1 cut(s)	1586
Eco47I	GGWCC	1 cut(s)	244
Eco57I	CTGAAG	1 cut(s)	951
Eco81I	CCTNAGG	1 cut(s)	1581
Eco88I	CYCGRG	1 cut(s)	723
EcoRII	CCWGG	1 cut(s)	504
EcoT14I	CCWWGG	1 cut(s)	1448
EcoT22I	ATGCAT	1 cut(s)	1198
ErhI	CCWWGG	1 cut(s)	1448
FaeI	CATG	7 cut(s)	47, 461, 577, 1043, 1100, 1360, 1554
FatI	CATG	7 cut(s)	43, 457, 573, 1039, 1096, 1356, 1550
FauI	CCCGC	1 cut(s)	64
FbaI	TGATCA	1 cut(s)	531
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	4 cut(s)	526, 1097, 1139, 1315
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	4 cut(s)	1079, 1170, 1380, 1494
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	4 cut(s)	684, 757, 1149, 1586
Hin1II	CATG	7 cut(s)	47, 461, 577, 1043, 1100, 1360, 1554
HincII	GTYRAC	1 cut(s)	1441
HindII	GTYRAC	1 cut(s)	1441
HindIII	AAGCTT	1 cut(s)	580
HinfI	GANTC	7 cut(s)	149, 500, 563, 958, 979, 1594, 1686
HphI	GGTGA	2 cut(s)	1154, 1260
Hpy166II	GTNNAC	5 cut(s)	98, 310, 1283, 1441, 1487
Hpy188I	TCNGA	9 cut(s)	121, 651, 661, 676, 739, 789, 970, 1027, 1700
Hpy188III	TCNNGA	8 cut(s)	242, 372, 470, 723, 1228, 1580, 1591, 1598
Hpy8I	GTNNAC	5 cut(s)	98, 310, 1283, 1441, 1487
HpyAV	CCTTC	7 cut(s)	801, 822, 898, 926, 1225, 1253, 1597
HpyCH4III	ACNGT	3 cut(s)	10, 549, 625
HpyCH4IV	ACGT	1 cut(s)	1457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	60, 109, 1376
HpyF3I	CTNAG	5 cut(s)	738, 865, 900, 1155, 1581
HpySE526I	ACGT	1 cut(s)	1457
Hsp92II	CATG	7 cut(s)	47, 461, 577, 1043, 1100, 1360, 1554
Ksp22I	TGATCA	1 cut(s)	531
Kzo9I	GATC	4 cut(s)	531, 656, 1030, 1087
LmnI	GCTCC	2 cut(s)	160, 271
LweI	GCATC	2 cut(s)	961, 1274
MaeI	CTAG	4 cut(s)	1079, 1170, 1380, 1494
MaeII	ACGT	1 cut(s)	1457
MaeIII	GTNAC	3 cut(s)	10, 619, 925
MalI	GATC	4 cut(s)	533, 658, 1032, 1089
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	4 cut(s)	531, 656, 1030, 1087
MfeI	CAATTG	3 cut(s)	162, 882, 1113
MlyI	GAGTC	2 cut(s)	494, 1603
MmeI	TCCRAC	2 cut(s)	182, 812
Mph1103I	ATGCAT	1 cut(s)	1198
MslI	CAYNNNNRTG	2 cut(s)	572, 1549
MspA1I	CMGCKG	1 cut(s)	71
MspR9I	CCNGG	1 cut(s)	506
MunI	CAATTG	3 cut(s)	162, 882, 1113
Mva1269I	GAATGC	1 cut(s)	115
MvaI	CCWGG	1 cut(s)	506
MvnI	CGCG	1 cut(s)	112
MwoI	GCNNNNNNNGC	3 cut(s)	60, 109, 1376
NdeII	GATC	4 cut(s)	531, 656, 1030, 1087
NheI	GCTAGC	1 cut(s)	1379
NlaIII	CATG	7 cut(s)	47, 461, 577, 1043, 1100, 1360, 1554
NlaIV	GGNNCC	3 cut(s)	267, 937, 1362
NmuCI	GTSAC	2 cut(s)	10, 619
NsiI	ATGCAT	1 cut(s)	1198
NspI	RCATGY	3 cut(s)	1043, 1100, 1554
PaeI	GCATGC	2 cut(s)	1043, 1100
PaqCI	CACCTGC	1 cut(s)	325
PasI	CCCWGGG	1 cut(s)	505
PceI	AGGCCT	1 cut(s)	1586
PciI	ACATGT	1 cut(s)	1550
PctI	GAATGC	1 cut(s)	115
PfeI	GAWTC	5 cut(s)	149, 563, 958, 979, 1686
PkrI	GCNGC	1 cut(s)	114
PleI	GAGTC	2 cut(s)	494, 1602
PpsI	GAGTC	2 cut(s)	494, 1602
PscI	ACATGT	1 cut(s)	1550
PshAI	GACNNNNGTC	1 cut(s)	103
PsiI	TTATAA	1 cut(s)	1401
Psp1406I	AACGTT	1 cut(s)	1457
Psp6I	CCWGG	1 cut(s)	504
PspGI	CCWGG	1 cut(s)	504
PspN4I	GGNNCC	3 cut(s)	267, 937, 1362
PspPI	GGNCC	4 cut(s)	244, 682, 755, 1148
PstI	CTGCAG	1 cut(s)	1472
RsaI	GTAC	3 cut(s)	291, 1348, 1474
RsaNI	GTAC	3 cut(s)	290, 1347, 1473
RseI	CAYNNNNRTG	2 cut(s)	572, 1549
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	4 cut(s)	531, 656, 1030, 1087
Sau96I	GGNCC	4 cut(s)	244, 682, 755, 1148
ScaI	AGTACT	1 cut(s)	1474
SchI	GAGTC	2 cut(s)	494, 1603
ScrFI	CCNGG	1 cut(s)	506
SfaNI	GCATC	2 cut(s)	961, 1274
SfcI	CTRYAG	2 cut(s)	894, 1468
SinI	GGWCC	1 cut(s)	244
SmiMI	CAYNNNNRTG	2 cut(s)	572, 1549
SmlI	CTYRAG	2 cut(s)	194, 303
SmoI	CTYRAG	2 cut(s)	194, 303
SphI	GCATGC	2 cut(s)	1043, 1100
SseBI	AGGCCT	1 cut(s)	1586
SsiI	CCGC	5 cut(s)	71, 112, 153, 1082, 1100
SspMI	CTAG	4 cut(s)	1079, 1170, 1380, 1494
StuI	AGGCCT	1 cut(s)	1586
StyD4I	CCNGG	1 cut(s)	504
StyI	CCWWGG	1 cut(s)	1448
TaaI	ACNGT	3 cut(s)	10, 549, 625
TaiI	ACGT	1 cut(s)	1460
TaqI	TCGA	2 cut(s)	373, 1227
TatI	WGTACW	2 cut(s)	1346, 1472
TauI	GCSGC	1 cut(s)	115
TfiI	GAWTC	5 cut(s)	149, 563, 958, 979, 1686
TscAI	CASTG	2 cut(s)	1285, 1632
TseFI	GTSAC	2 cut(s)	10, 619
Tsp45I	GTSAC	2 cut(s)	10, 619
TspDTI	ATGAA	9 cut(s)	51, 396, 660, 837, 1074, 1272, 1317, 1325, 1664
TspGWI	ACGGA	1 cut(s)	72
TspRI	CASTG	2 cut(s)	1285, 1632
VpaK11BI	GGWCC	1 cut(s)	244
XapI	RAATTY	1 cut(s)	20
XceI	RCATGY	3 cut(s)	1043, 1100, 1554
XspI	CTAG	4 cut(s)	1079, 1170, 1380, 1494
ZrmI	AGTACT	1 cut(s)	1474
Zsp2I	ATGCAT	1 cut(s)	1198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.