Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0011861

Physical Location & Seq

Genomic Coordinates Forward (+)

23347329 .. 23353264

Gene Structure 5936 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30120.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1296 bp

ATGTCTCAGACGAAACATGTCATATTTCTCAAAACTTACGGCCGATACAAGAGCCTTATGTCTAATTTCATGGAAGAGAAGAACATTATGGCAGAATCTTCCCATCTCTCTCCCAAAAGTAGTGAACCAGAGCCGAACATCAATAAACATTTGGTGGAGTCTCCTACACAGTCTGACCCCATCTCTGATGAGTTGGTGAAGTCTTCCCAAATATTCGGCCACAATATGTTAGTGGAGTCTGATTCTATCATCGATGAGTTGGTGGGATCTCCCCCACAGTCGTACCCTATCGATGATGAATTGATGGAGTCTTCTCCACAGTCTTACCCCATTGCCGATGAGTCGGCAGAGTCTCACCAACAGTTTGAACCAATAGCCGATGAATTGGTGGACTCTCTCTCGCAGACTGACCCCATTACCAATGAGTTTGTGAAGTCTCCTCTACTGTCTGACCCCATGATCGATGAGAACAACAAAACACCTCCAACTGAAGAAGGTGGTCAATCAGAGCTAGGGGATGCAATGATGACTCCCAAGAAGAAGAGGGGCAGACCTAGGAAGTACGAGGTCAATGAAGAAATGGCTTTTGATATCCTGGCTTCTAACATGGAGGGCACATCTAAGAGCTCAAAAGGTCCCCGTAAAAGCTCAAGCAATAAATTGCAGTGGCTCGCTACTAATGCTACTGGTGCTGTTTCAAACCCTATTATACACCCTAGTCCTACTTTAGGGTATGTACAATATCAGGGTTCTTATGATATCCTCAATCTCTCTGGATCATTTATATATGATGCAATGTCTCCACCCAACAAATTGGGCGAGTTAACCATTACATTGGCTAATCCTGACCATTCGGTTTTTGGCGGCCTTGTTTTATCAGCAACACCACTAAGAGCTGCATGTCCTATTCAACTCATTCTCGGAGCATTTAACCAAGAGGAGCAGTTGAATCACATGAATGTGATAAGGAGGGCTTCAACTGCTTACCCTAGTGTAATAGCTAGTCCAAACCTTCCAACGATTTCTACACAAGTGATGTCGAACCATGCAGGAGCTCAGTATGGGATTCGTGTTCCATGCCCACAGACATTTCCCAATGTGATAGCTAGTCCAAACCTTCCAATAATTCCTACACAACTAATAATTCCTACACAAGTGATGCCGAACCATGAAGGAGATCAGTATGAGATTCGTGTTCCATGCCCACAAATATTTCCCGCTTTCAACAACAACCAGGATGAGACTCCTGTTCGATATCAACAAACATCATTTTTCAATCTCAACCATCTTCCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook DUF296

Protein Analysis

432

Amino Acids

47.54

Weight (kDa)

4.92

Isoelectric Point (pI)

60.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011861)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G45850 AT2G45850 AT2G45850
fragaria_vesca	FvH4_3g30120
prunus_persica	Prupe.6G117900_v2.0.a1
rosa_laevigata	RLG00000013182 RLG00000034994 RLG00000034998
rosa_multiflora	Rmu_sc0003071.1_g000021 Rmu_sc0003989.1_g000016
rosa_roxburghii	Rroxscaffold_1G00024700 Rroxscaffold_1G00024710
rosa_rugosa	Rorug05G0293500
rosa_samantha	Rh5AG363500 Rh5BG375500 Rh5CG397200 Rh5CG397600 Rh5DG388700
rosa_wichuraiana	Rw5G034200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	864, 1218
AclWI	GGATC	2 cut(s)	274, 784
AcoI	YGGCCR	2 cut(s)	40, 217
AcuI	CTGAAG	1 cut(s)	510
AfaI	GTAC	3 cut(s)	284, 563, 738
AfiI	CCNNNNNNNGG	1 cut(s)	728
AflIII	ACRYGT	1 cut(s)	16
AgsI	TTSAA	7 cut(s)	368, 699, 911, 949, 978, 1225, 1276
AjnI	CCWGG	2 cut(s)	594, 1233
AluBI	AGCT	7 cut(s)	511, 627, 648, 896, 1001, 1055, 1106
AluI	AGCT	7 cut(s)	511, 627, 648, 896, 1001, 1055, 1106
Alw21I	GWGCWC	2 cut(s)	629, 1057
Alw26I	GTCTC	6 cut(s)	9, 165, 357, 441, 804, 1235
AlwI	GGATC	2 cut(s)	274, 784
AoxI	GGCC	3 cut(s)	40, 217, 865
ApeKI	GCWGC	1 cut(s)	896
AspA2I	CCTAGG	1 cut(s)	554
AspS9I	GGNCC	1 cut(s)	635
AsuHPI	GGTGA	2 cut(s)	208, 347
AvaII	GGWCC	1 cut(s)	635
AvrII	CCTAGG	1 cut(s)	554
BaeGI	GKGCMC	1 cut(s)	617
BaeI	ACNNNNGTAYC	2 cut(s)	266, 299
BanII	GRGCYC	2 cut(s)	629, 1057
BbsI	GAAGAC	2 cut(s)	195, 303
Bbv12I	GWGCWC	2 cut(s)	629, 1057
BbvI	GCAGC	1 cut(s)	883
BccI	CCATC	4 cut(s)	111, 188, 298, 1293
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	2 cut(s)	596, 1235
BcoDI	GTCTC	6 cut(s)	9, 165, 357, 441, 804, 1235
BfaI	CTAG	6 cut(s)	512, 555, 717, 990, 1002, 1107
BisI	GCNGC	2 cut(s)	865, 897
BlnI	CCTAGG	1 cut(s)	554
BlsI	GCNGC	2 cut(s)	866, 898
Bme1390I	CCNGG	2 cut(s)	596, 1235
Bme18I	GGWCC	1 cut(s)	635
BmgT120I	GGNCC	1 cut(s)	635
BmiI	GGNNCC	1 cut(s)	637
BmrFI	CCNGG	2 cut(s)	596, 1235
BmsI	GCATC	3 cut(s)	508, 781, 1149
BpiI	GAAGAC	2 cut(s)	195, 303
BpuEI	CTTGAG	1 cut(s)	634
Bsa29I	ATCGAT	3 cut(s)	252, 291, 462
BsaJI	CCNNGG	1 cut(s)	554
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse1I	ACTGG	1 cut(s)	691
Bse3DI	GCAATG	3 cut(s)	330, 528, 801
BseBI	CCWGG	2 cut(s)	596, 1235
BseCI	ATCGAT	3 cut(s)	252, 291, 462
BseDI	CCNNGG	1 cut(s)	554
BseGI	GGATG	2 cut(s)	523, 1243
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMI	GCAATG	3 cut(s)	330, 528, 801
BseMII	CTCAG	2 cut(s)	20, 1070
BseNI	ACTGG	1 cut(s)	691
BseRI	GAGGAG	2 cut(s)	429, 953
BseSI	GKGCMC	1 cut(s)	617
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	883
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	3 cut(s)	42, 219, 867
BshVI	ATCGAT	3 cut(s)	252, 291, 462
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	2 cut(s)	629, 1057
BslFI	GGGAC	1 cut(s)	621
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	6 cut(s)	9, 165, 357, 441, 804, 1235
BsmFI	GGGAC	1 cut(s)	621
BsnI	GGCC	3 cut(s)	42, 219, 867
Bsp1286I	GDGCHC	3 cut(s)	617, 629, 1057
Bsp1407I	TGTACA	1 cut(s)	736
Bsp143I	GATC	4 cut(s)	266, 459, 776, 1177
BspACI	CCGC	2 cut(s)	864, 1218
BspANI	GGCC	3 cut(s)	42, 219, 867
BspCNI	CTCAG	2 cut(s)	19, 1069
BspDI	ATCGAT	3 cut(s)	252, 291, 462
BspLI	GGNNCC	1 cut(s)	637
BspPI	GGATC	2 cut(s)	274, 784
BsrDI	GCAATG	3 cut(s)	330, 528, 801
BsrGI	TGTACA	1 cut(s)	736
BsrI	ACTGG	1 cut(s)	691
BssECI	CCNNGG	1 cut(s)	554
BssMI	GATC	4 cut(s)	266, 459, 776, 1177
BssT1I	CCWWGG	1 cut(s)	554
Bst2UI	CCWGG	2 cut(s)	596, 1235
Bst4CI	ACNGT	5 cut(s)	171, 279, 321, 363, 447
Bst6I	CTCTTC	2 cut(s)	69, 536
BstAUI	TGTACA	1 cut(s)	736
BstC8I	GCNNGC	1 cut(s)	672
BstDEI	CTNAG	5 cut(s)	6, 621, 890, 1056, 1293
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	2 cut(s)	523, 1243
BstKTI	GATC	4 cut(s)	269, 462, 779, 1180
BstMAI	GTCTC	6 cut(s)	9, 165, 357, 441, 804, 1235
BstMBI	GATC	4 cut(s)	266, 459, 776, 1177
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	680, 689, 980
BstNI	CCWGG	2 cut(s)	596, 1235
BstNSI	RCATGY	2 cut(s)	20, 903
BstSCI	CCNGG	2 cut(s)	594, 1233
BstSLI	GKGCMC	1 cut(s)	617
BstV1I	GCAGC	1 cut(s)	883
BstV2I	GAAGAC	2 cut(s)	195, 303
BstX2I	RGATCY	1 cut(s)	266
BstXI	CCANNNNNNTGG	2 cut(s)	814, 835
BstYI	RGATCY	1 cut(s)	266
BstZI	CGGCCG	1 cut(s)	40
Bsu15I	ATCGAT	3 cut(s)	252, 291, 462
BsuRI	GGCC	3 cut(s)	42, 219, 867
BsuTUI	ATCGAT	3 cut(s)	252, 291, 462
BtsCI	GGATG	2 cut(s)	523, 1243
BtsI	GCAGTG	1 cut(s)	671
BtsIMutI	CAGTG	1 cut(s)	671
Cac8I	GCNNGC	1 cut(s)	672
Cfr13I	GGNCC	1 cut(s)	635
ClaI	ATCGAT	3 cut(s)	252, 291, 462
Csp6I	GTAC	3 cut(s)	283, 562, 737
CviQI	GTAC	3 cut(s)	283, 562, 737
DdeI	CTNAG	5 cut(s)	6, 621, 890, 1056, 1293
DpnI	GATC	4 cut(s)	268, 461, 778, 1179
DpnII	GATC	4 cut(s)	266, 459, 776, 1177
EaeI	YGGCCR	2 cut(s)	40, 217
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	2 cut(s)	69, 536
EarI	CTCTTC	2 cut(s)	69, 536
Ecl136II	GAGCTC	2 cut(s)	627, 1055
EclXI	CGGCCG	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	554
Eco24I	GRGCYC	2 cut(s)	629, 1057
Eco32I	GATATC	3 cut(s)	592, 760, 1256
Eco47I	GGWCC	1 cut(s)	635
Eco52I	CGGCCG	1 cut(s)	40
Eco53kI	GAGCTC	2 cut(s)	627, 1055
Eco57I	CTGAAG	1 cut(s)	510
EcoICRI	GAGCTC	2 cut(s)	627, 1055
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoO109I	RGGNCCY	1 cut(s)	635
EcoRII	CCWGG	2 cut(s)	594, 1233
EcoRV	GATATC	3 cut(s)	592, 760, 1256
EcoT14I	CCWWGG	1 cut(s)	554
EcoT38I	GRGCYC	2 cut(s)	629, 1057
ErhI	CCWWGG	1 cut(s)	554
FalI	AAGNNNNNCTT	2 cut(s)	958, 990
FaqI	GGGAC	1 cut(s)	621
FauI	CCCGC	1 cut(s)	1225
Fnu4HI	GCNGC	2 cut(s)	865, 897
FokI	GGATG	2 cut(s)	530, 1250
FriOI	GRGCYC	2 cut(s)	629, 1057
Fsp4HI	GCNGC	2 cut(s)	865, 897
FspBI	CTAG	6 cut(s)	512, 555, 717, 990, 1002, 1107
GluI	GCNGC	2 cut(s)	865, 897
HaeIII	GGCC	3 cut(s)	42, 219, 867
HincII	GTYRAC	1 cut(s)	825
HindII	GTYRAC	1 cut(s)	825
HpaI	GTTAAC	1 cut(s)	825
HphI	GGTGA	2 cut(s)	208, 347
Hpy166II	GTNNAC	3 cut(s)	125, 391, 825
Hpy188I	TCNGA	7 cut(s)	9, 175, 187, 241, 451, 508, 923
Hpy188III	TCNNGA	2 cut(s)	774, 845
Hpy8I	GTNNAC	3 cut(s)	125, 391, 825
HpyAV	CCTTC	4 cut(s)	488, 1022, 1127, 1166
HpyCH4III	ACNGT	5 cut(s)	171, 279, 321, 363, 447
HpyCH4V	TGCA	5 cut(s)	521, 664, 794, 899, 1049
HpyF10VI	GCNNNNNNNGC	3 cut(s)	680, 689, 980
HpyF3I	CTNAG	5 cut(s)	6, 621, 890, 1056, 1293
KspAI	GTTAAC	1 cut(s)	825
Kzo9I	GATC	4 cut(s)	266, 459, 776, 1177
LmnI	GCTCC	3 cut(s)	923, 940, 1052
Lsp1109I	GCAGC	1 cut(s)	883
LweI	GCATC	3 cut(s)	508, 781, 1149
MaeI	CTAG	6 cut(s)	512, 555, 717, 990, 1002, 1107
MalI	GATC	4 cut(s)	268, 461, 778, 1179
MboI	GATC	4 cut(s)	266, 459, 776, 1177
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	3 cut(s)	617, 629, 1057
MluCI	AATT	7 cut(s)	64, 299, 383, 659, 812, 1125, 1143
MlyI	GAGTC	8 cut(s)	167, 245, 317, 350, 359, 386, 523, 1237
MmeI	TCCRAC	2 cut(s)	509, 1040
MnlI	CCTC	8 cut(s)	450, 492, 537, 559, 604, 773, 931, 963
MseI	TTAA	2 cut(s)	824, 930
MslI	CAYNNNNRTG	2 cut(s)	957, 959
MspR9I	CCNGG	2 cut(s)	596, 1235
MvaI	CCWGG	2 cut(s)	596, 1235
MwoI	GCNNNNNNNGC	3 cut(s)	680, 689, 980
NdeII	GATC	4 cut(s)	266, 459, 776, 1177
NlaIV	GGNNCC	1 cut(s)	637
NspI	RCATGY	2 cut(s)	20, 903
PciI	ACATGT	1 cut(s)	16
PfeI	GAWTC	5 cut(s)	95, 242, 949, 1066, 1189
PkrI	GCNGC	2 cut(s)	866, 898
PleI	GAGTC	8 cut(s)	166, 244, 316, 349, 358, 386, 523, 1237
PpsI	GAGTC	8 cut(s)	166, 244, 316, 349, 358, 386, 523, 1237
PpuMI	RGGWCCY	1 cut(s)	635
PscI	ACATGT	1 cut(s)	16
Psp124BI	GAGCTC	2 cut(s)	629, 1057
Psp5II	RGGWCCY	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	594, 1233
PspGI	CCWGG	2 cut(s)	594, 1233
PspN4I	GGNNCC	1 cut(s)	637
PspPI	GGNCC	1 cut(s)	635
PspPPI	RGGWCCY	1 cut(s)	635
PsuI	RGATCY	1 cut(s)	266
RsaI	GTAC	3 cut(s)	284, 563, 738
RsaNI	GTAC	3 cut(s)	283, 562, 737
RseI	CAYNNNNRTG	2 cut(s)	957, 959
SacI	GAGCTC	2 cut(s)	629, 1057
SaqAI	TTAA	2 cut(s)	824, 930
SatI	GCNGC	2 cut(s)	865, 897
Sau3AI	GATC	4 cut(s)	266, 459, 776, 1177
Sau96I	GGNCC	1 cut(s)	635
SchI	GAGTC	8 cut(s)	167, 245, 317, 350, 359, 386, 523, 1237
ScrFI	CCNGG	2 cut(s)	596, 1235
SduI	GDGCHC	3 cut(s)	617, 629, 1057
SfaNI	GCATC	3 cut(s)	508, 781, 1149
SinI	GGWCC	1 cut(s)	635
SmiMI	CAYNNNNRTG	2 cut(s)	957, 959
SmlI	CTYRAG	1 cut(s)	649
SmoI	CTYRAG	1 cut(s)	649
Sse9I	AATT	7 cut(s)	64, 299, 383, 659, 812, 1125, 1143
SsiI	CCGC	2 cut(s)	864, 1218
SspI	AATATT	2 cut(s)	213, 1212
SspMI	CTAG	6 cut(s)	512, 555, 717, 990, 1002, 1107
SstI	GAGCTC	2 cut(s)	629, 1057
StyD4I	CCNGG	2 cut(s)	594, 1233
StyI	CCWWGG	1 cut(s)	554
TaaI	ACNGT	5 cut(s)	171, 279, 321, 363, 447
TaqI	TCGA	5 cut(s)	252, 291, 462, 1040, 1252
TasI	AATT	7 cut(s)	64, 299, 383, 659, 812, 1125, 1143
TatI	WGTACW	1 cut(s)	736
TauI	GCSGC	1 cut(s)	867
TfiI	GAWTC	5 cut(s)	95, 242, 949, 1066, 1189
Tru1I	TTAA	2 cut(s)	824, 930
Tru9I	TTAA	2 cut(s)	824, 930
TscAI	CASTG	1 cut(s)	671
TseI	GCWGC	1 cut(s)	896
TspDTI	ATGAA	6 cut(s)	58, 312, 396, 588, 971, 1185
TspRI	CASTG	1 cut(s)	671
VpaK11BI	GGWCC	1 cut(s)	635
XagI	CCTNNNNNAGG	1 cut(s)	726
XceI	RCATGY	2 cut(s)	20, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	857
XmaJI	CCTAGG	1 cut(s)	554
XspI	CTAG	6 cut(s)	512, 555, 717, 990, 1002, 1107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.