Rmu_sc0003989.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003989.1
OG0011861
Physical Location & Seq
Reverse (-)
36924 .. 37286
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003989.1_g000016.1.cds

Sequence Viewer

Length: 363 bp
ctggagccaaacaacaataaacagttggtggagtgtccttcagaggccgaccctatcgccaatgagttggtggagtctcctccacaatttgaccccatcgccgatgagaacaatgaaacactatcagccgaaaaaggcggtcaattggaggcaggtgaagtgatgataacacccaagcagaagaggggggccgagagacataggaagtacgaggtcaatgaagaaacggtctctgccgttccggcttccaactcggagggctcttgcaagaaagcaaaaggctgccctaaaggatcaggcaataaattgcagcggctcgttgtcaatggtgagttcttcccccaatggcaagtttgcgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

13.09

Weight (kDa)

4.97

Isoelectric Point (pI)

49.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 143
AciI CCGC 2 cut(s) 138, 313
AclWI GGATC 1 cut(s) 301
AcuI CTGAAG 1 cut(s) 24
AfaI GTAC 1 cut(s) 209
Alw26I GTCTC 3 cut(s) 81, 190, 235
AlwI GGATC 1 cut(s) 301
AoxI GGCC 2 cut(s) 45, 189
ApeKI GCWGC 2 cut(s) 282, 310
AspS9I GGNCC 1 cut(s) 189
AsuHPI GGTGA 2 cut(s) 167, 341
BanII GRGCYC 1 cut(s) 263
BbvI GCAGC 2 cut(s) 269, 322
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 221
BcoDI GTCTC 3 cut(s) 81, 190, 235
BfuAI ACCTGC 1 cut(s) 143
BglI GCCNNNNNGGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 283, 311, 314
BlsI GCNGC 3 cut(s) 284, 312, 315
BmgT120I GGNCC 1 cut(s) 189
BmiI GGNNCC 2 cut(s) 6, 190
BpmI CTGGAG 1 cut(s) 23
BsaI GGTCTC 1 cut(s) 235
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 2 cut(s) 269, 322
BshFI GGCC 2 cut(s) 47, 191
BsiSI CCGG 1 cut(s) 242
BsmAI GTCTC 3 cut(s) 81, 190, 235
BsnI GGCC 2 cut(s) 47, 191
Bso31I GGTCTC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 1 cut(s) 293
BspACI CCGC 2 cut(s) 138, 313
BspANI GGCC 2 cut(s) 47, 191
BspLI GGNNCC 2 cut(s) 6, 190
BspMI ACCTGC 1 cut(s) 143
BspPI GGATC 1 cut(s) 301
BspTNI GGTCTC 1 cut(s) 235
BssMI GATC 1 cut(s) 293
Bst4CI ACNGT 2 cut(s) 24, 229
Bst6I CTCTTC 1 cut(s) 176
BstKTI GATC 1 cut(s) 296
BstMAI GTCTC 3 cut(s) 81, 190, 235
BstMBI GATC 1 cut(s) 293
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstV1I GCAGC 2 cut(s) 269, 322
BstXI CCANNNNNNTGG 1 cut(s) 67
BsuRI GGCC 2 cut(s) 47, 191
BtgZI GCGATG 1 cut(s) 82
BveI ACCTGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 208
CviJI RGCY 8 cut(s) 7, 47, 128, 191, 245, 261, 282, 316
CviKI_1 RGCY 8 cut(s) 7, 47, 128, 191, 245, 261, 282, 316
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 295
DpnII GATC 1 cut(s) 293
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 263
Eco31I GGTCTC 1 cut(s) 235
Eco57I CTGAAG 1 cut(s) 24
EcoT38I GRGCYC 1 cut(s) 263
FaiI YATR 1 cut(s) 201
Fnu4HI GCNGC 3 cut(s) 283, 311, 314
FriOI GRGCYC 1 cut(s) 263
Fsp4HI GCNGC 3 cut(s) 283, 311, 314
GluI GCNGC 3 cut(s) 283, 311, 314
GsuI CTGGAG 1 cut(s) 23
HaeIII GGCC 2 cut(s) 47, 191
HapII CCGG 1 cut(s) 242
HinfI GANTC 1 cut(s) 74
HpaII CCGG 1 cut(s) 242
HphI GGTGA 2 cut(s) 167, 341
Hpy188I TCNGA 2 cut(s) 43, 256
HpyAV CCTTC 1 cut(s) 48
HpyCH4III ACNGT 2 cut(s) 24, 229
HpyCH4V TGCA 2 cut(s) 267, 310
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 293
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 3 cut(s) 138, 255, 282
Lsp1109I GCAGC 2 cut(s) 269, 322
MalI GATC 1 cut(s) 295
MboI GATC 1 cut(s) 293
MboII GAAGA 3 cut(s) 193, 233, 328
MfeI CAATTG 1 cut(s) 143
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 3 cut(s) 86, 143, 305
MlyI GAGTC 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 273
MnlI CCTC 6 cut(s) 37, 90, 142, 177, 205, 250
MspA1I CMGCKG 1 cut(s) 313
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 143
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 1 cut(s) 293
NlaIV GGNNCC 2 cut(s) 6, 190
NmeAIII GCCGAG 1 cut(s) 217
PaqCI CACCTGC 1 cut(s) 143
PkrI GCNGC 3 cut(s) 284, 312, 315
PleI GAGTC 1 cut(s) 82
PpsI GAGTC 1 cut(s) 82
PspN4I GGNNCC 2 cut(s) 6, 190
PspPI GGNCC 1 cut(s) 189
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
SatI GCNGC 3 cut(s) 283, 311, 314
Sau3AI GATC 1 cut(s) 293
Sau96I GGNCC 1 cut(s) 189
SchI GAGTC 1 cut(s) 83
SduI GDGCHC 1 cut(s) 263
SetI ASST 2 cut(s) 157, 216
Sse9I AATT 3 cut(s) 86, 143, 305
SsiI CCGC 2 cut(s) 138, 313
TaaI ACNGT 2 cut(s) 24, 229
TasI AATT 3 cut(s) 86, 143, 305
TauI GCSGC 1 cut(s) 316
TseI GCWGC 2 cut(s) 282, 310
TspDTI ATGAA 2 cut(s) 129, 234
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.