RH5CG397600

DNA repair protein

Design Primers CRISPR Design

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
OG0011861
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG397600.1

Sequence Viewer

Length: 1188 bp
ATGTCTAATCCCATGGAAGAGAAGAACATTATGGAATCTCCCCCTATCTCTCCCCTAAGCAGTGAACTGGAACCGAACAATAGTAAACAGTTGGTGGGGTGTCTTCCACAGTCTGACCTTATCGCCAAACAGGAGTTTCCTCCACAGTCTGACCCTATCGCCAATGAGTTGGTGGAGTCTTCTCTGCAGTCTGATCCCATTGCCAATGTGTTGTTGGAGTCTCCTCCACAGTCTGAGTCTGACCCCATCACCGATGAGAACAATGAAGCACTATCAGCTGAAGGCGGTCAATCAGAGGTAGGTGAAGTGATGATGACACCTAAGAAGAAGAGGGGGGGGAGACCCAGGAATTATGAGGTCAATGAAGAAATGGTCTCTGATGTTTTGACTTCCAACTCGGAGGGCTCCTCTAAGAAAACAAAAGACCACCCCAAAGGCTCAGGCAATAAATTGCAATGCCCCGCTGCCGATGAAACTGGTGGAGCTGGAAATAACTTCATCCCTTTCACAGTGACTGTGCAGACTGGGGAGGACCTTGTTCATAAAATATGGGTCATGGCACAGAGGGACCATCAATCAATTTGCATTCTTTCGGCTACTGGTGCTGTTTCTAAACCTGTCATACGACCTAATGATGCTGTAGGGCTTCCTGATGGCGAACGGGGAGATCTCAATCAACCACACAAACCCATCTTCGTCAAGGGCACATGGTTGGAGTCCCGCTTCGACCTCTCCATCACCGACGGCCTCAACGCCTGGGTCTGCCATGCCTCCGAAGACACGGTTAGAGACCGAGCCGCCCAGTGGGACCAGCCGGAATCAGAGTACGTCTTATTAGCCGAGCGCTATATAGGGTTTCAGCACTCTGATTCCGTCTACGGATTCACTGACGCTGGCAATGGCCACAGAAGGTTGTCATGGACTTTTGAGAAGGAAGGGACGAAGCTAGAATGGCGGTGGAAGTGTCAACCATCCCCTAACAGTAAGGAAACAACAGCTACAGTGTTGGATTTTCTGATGGATGCAAATGTTGGGCTAAGTTTTCTTGGGGTCTTGAATTTAAAGAAGGCTAAACTAAGAGAGCTTCGGGACAAGCTCTCAAAACAAGAAGCGGCTGGGAAGTATCCAAATTTCAGCATGTTTCTATCTAGTAGGTCTCGAGGTCGAAAGAGGGCATTGGAGAAATAG

Protein Analysis

395

Amino Acids

43.65

Weight (kDa)

5.32

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
XRCC4 PF06632 230 - 325 7.4e-26 XRCC4 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 876
AciI CCGC 6 cut(s) 285, 462, 721, 798, 955, 1112
AclWI GGATC 1 cut(s) 188
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 2 cut(s) 1057, 1129
AcuI CTGAAG 1 cut(s) 300
AfaI GTAC 1 cut(s) 827
AfeI AGCGCT 1 cut(s) 845
AfiI CCNNNNNNNGG 1 cut(s) 804
AgsI TTSAA 1 cut(s) 1057
AjnI CCWGG 2 cut(s) 344, 755
AluBI AGCT 6 cut(s) 278, 485, 946, 998, 1084, 1096
AluI AGCT 6 cut(s) 278, 485, 946, 998, 1084, 1096
Alw26I GTCTC 5 cut(s) 225, 334, 379, 783, 1161
AlwI GGATC 1 cut(s) 188
AlwNI CAGNNNCTG 1 cut(s) 515
Ama87I CYCGRG 1 cut(s) 1158
Aor51HI AGCGCT 1 cut(s) 845
AoxI GGCC 2 cut(s) 745, 901
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 2 cut(s) 1057, 1129
AspLEI GCGC 1 cut(s) 846
AspS9I GGNCC 3 cut(s) 532, 568, 808
AsuHPI GGTGA 3 cut(s) 241, 314, 730
AvaI CYCGRG 1 cut(s) 1158
AvaII GGWCC 3 cut(s) 532, 568, 808
BaeGI GKGCMC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 903
BanII GRGCYC 1 cut(s) 407
BbsI GAAGAC 3 cut(s) 95, 171, 783
BbvI GCAGC 1 cut(s) 451
BccI CCATC 7 cut(s) 254, 579, 647, 698, 743, 979, 1012
BceAI ACGGC 1 cut(s) 760
BciT130I CCWGG 2 cut(s) 346, 757
BciVI GTATCC 1 cut(s) 1134
BcoDI GTCTC 5 cut(s) 225, 334, 379, 783, 1161
BfaI CTAG 2 cut(s) 947, 1149
BfmI CTRYAG 3 cut(s) 185, 639, 999
BfoI RGCGCY 1 cut(s) 847
BfuI GTATCC 1 cut(s) 1134
BglII AGATCT 1 cut(s) 667
BisI GCNGC 3 cut(s) 465, 798, 1113
BlsI GCNGC 3 cut(s) 466, 799, 1114
Bme1390I CCNGG 2 cut(s) 346, 757
Bme18I GGWCC 3 cut(s) 532, 568, 808
BmeT110I CYCGRG 1 cut(s) 1158
BmgT120I GGNCC 3 cut(s) 532, 568, 808
BmiI GGNNCC 4 cut(s) 72, 406, 569, 809
BmrFI CCNGG 2 cut(s) 346, 757
BmrI ACTGGG 2 cut(s) 534, 796
BmsI GCATC 2 cut(s) 625, 1012
BmuI ACTGGG 2 cut(s) 534, 796
BpiI GAAGAC 3 cut(s) 95, 171, 783
BplI GAGNNNNNCTC 2 cut(s) 392, 424
Bpu10I CCTNAGC 2 cut(s) 56, 439
BsaBI GATNNNNATC 1 cut(s) 672
BsaI GGTCTC 4 cut(s) 334, 379, 783, 1161
BsaJI CCNNGG 3 cut(s) 12, 344, 756
Bsc4I CCNNNNNNNGG 1 cut(s) 804
Bse1I ACTGG 5 cut(s) 72, 481, 529, 604, 802
Bse3DI GCAATG 3 cut(s) 198, 461, 904
Bse8I GATNNNNATC 1 cut(s) 672
BseBI CCWGG 2 cut(s) 346, 757
BseDI CCNNGG 3 cut(s) 12, 344, 756
BseGI GGATG 3 cut(s) 498, 971, 1027
BseJI GATNNNNATC 1 cut(s) 672
BseLI CCNNNNNNNGG 1 cut(s) 804
BseMI GCAATG 3 cut(s) 198, 461, 904
BseMII CTCAG 2 cut(s) 225, 453
BseNI ACTGG 5 cut(s) 72, 481, 529, 604, 802
BseRI GAGGAG 2 cut(s) 213, 397
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 1 cut(s) 451
BseYI CCCAGC 1 cut(s) 1115
BsgI GTGCAG 1 cut(s) 539
BshFI GGCC 2 cut(s) 747, 903
BsiHKCI CYCGRG 1 cut(s) 1158
BsiSI CCGG 1 cut(s) 815
BslFI GGGAC 5 cut(s) 581, 703, 821, 952, 1103
BslI CCNNNNNNNGG 1 cut(s) 804
BsmAI GTCTC 5 cut(s) 225, 334, 379, 783, 1161
BsmFI GGGAC 5 cut(s) 581, 703, 821, 952, 1103
BsmI GAATGC 1 cut(s) 585
BsnI GGCC 2 cut(s) 747, 903
Bso31I GGTCTC 4 cut(s) 334, 379, 783, 1161
BsoBI CYCGRG 1 cut(s) 1158
Bsp1286I GDGCHC 2 cut(s) 407, 707
Bsp143I GATC 2 cut(s) 193, 667
Bsp19I CCATGG 1 cut(s) 12
BspACI CCGC 6 cut(s) 285, 462, 721, 798, 955, 1112
BspANI GGCC 2 cut(s) 747, 903
BspCNI CTCAG 2 cut(s) 226, 452
BspLI GGNNCC 4 cut(s) 72, 406, 569, 809
BspMAI CTGCAG 1 cut(s) 189
BspPI GGATC 1 cut(s) 188
BspTNI GGTCTC 4 cut(s) 334, 379, 783, 1161
BsrDI GCAATG 3 cut(s) 198, 461, 904
BsrI ACTGG 5 cut(s) 72, 481, 529, 604, 802
BssECI CCNNGG 3 cut(s) 12, 344, 756
BssMI GATC 2 cut(s) 193, 667
BssT1I CCWWGG 1 cut(s) 12
Bst2UI CCWGG 2 cut(s) 346, 757
Bst4CI ACNGT 9 cut(s) 90, 111, 147, 231, 511, 517, 784, 983, 1003
Bst6I CTCTTC 2 cut(s) 12, 323
BstC8I GCNNGC 1 cut(s) 895
BstDEI CTNAG 7 cut(s) 56, 234, 321, 411, 439, 1037, 1076
BstDSI CCRYGG 1 cut(s) 12
BstF5I GGATG 3 cut(s) 498, 971, 1027
BstH2I RGCGCY 1 cut(s) 847
BstHHI GCGC 1 cut(s) 846
BstKTI GATC 2 cut(s) 196, 670
BstMAI GTCTC 5 cut(s) 225, 334, 379, 783, 1161
BstMBI GATC 2 cut(s) 193, 667
BstMWI GCNNNNNNNGC 3 cut(s) 275, 602, 952
BstNI CCWGG 2 cut(s) 346, 757
BstNSI RCATGY 1 cut(s) 1141
BstSCI CCNGG 2 cut(s) 344, 755
BstSFI CTRYAG 3 cut(s) 185, 639, 999
BstSLI GKGCMC 1 cut(s) 707
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 3 cut(s) 95, 171, 783
BstX2I RGATCY 1 cut(s) 667
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 667
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 2 cut(s) 747, 903
BtgI CCRYGG 1 cut(s) 12
BtsCI GGATG 3 cut(s) 498, 971, 1027
BtsI GCAGTG 1 cut(s) 67
BtsIMutI CAGTG 5 cut(s) 67, 516, 809, 885, 1008
Cac8I GCNNGC 1 cut(s) 895
CaiI CAGNNNCTG 1 cut(s) 515
CfoI GCGC 1 cut(s) 846
Cfr13I GGNCC 3 cut(s) 532, 568, 808
CseI GACGC 1 cut(s) 899
Csp6I GTAC 1 cut(s) 826
CviAII CATG 6 cut(s) 13, 556, 708, 767, 918, 1138
CviQI GTAC 1 cut(s) 826
DdeI CTNAG 7 cut(s) 56, 234, 321, 411, 439, 1037, 1076
DpnI GATC 2 cut(s) 195, 669
DpnII GATC 2 cut(s) 193, 667
DraI TTTAAA 1 cut(s) 1062
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 2 cut(s) 12, 323
EarI CTCTTC 2 cut(s) 12, 323
Eco130I CCWWGG 1 cut(s) 12
Eco24I GRGCYC 1 cut(s) 407
Eco31I GGTCTC 4 cut(s) 334, 379, 783, 1161
Eco47I GGWCC 3 cut(s) 532, 568, 808
Eco47III AGCGCT 1 cut(s) 845
Eco57I CTGAAG 1 cut(s) 300
Eco88I CYCGRG 1 cut(s) 1158
EcoO109I RGGNCCY 1 cut(s) 532
EcoRII CCWGG 2 cut(s) 344, 755
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 407
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 6 cut(s) 16, 559, 711, 770, 921, 1141
FaqI GGGAC 5 cut(s) 581, 703, 821, 952, 1103
FatI CATG 6 cut(s) 12, 555, 707, 766, 917, 1137
FauI CCCGC 2 cut(s) 469, 728
FblI GTMKAC 1 cut(s) 876
Fnu4HI GCNGC 3 cut(s) 465, 798, 1113
FokI GGATG 3 cut(s) 485, 958, 1034
FriOI GRGCYC 1 cut(s) 407
Fsp4HI GCNGC 3 cut(s) 465, 798, 1113
FspBI CTAG 2 cut(s) 947, 1149
GlaI GCGC 1 cut(s) 845
GluI GCNGC 3 cut(s) 465, 798, 1113
GsaI CCCAGC 1 cut(s) 1119
HaeII RGCGCY 1 cut(s) 847
HaeIII GGCC 2 cut(s) 747, 903
HapII CCGG 1 cut(s) 815
HgaI GACGC 1 cut(s) 899
HhaI GCGC 1 cut(s) 846
Hin1II CATG 6 cut(s) 16, 559, 711, 770, 921, 1141
Hin6I GCGC 1 cut(s) 844
HinP1I GCGC 1 cut(s) 844
HincII GTYRAC 1 cut(s) 968
HindII GTYRAC 1 cut(s) 968
HinfI GANTC 8 cut(s) 35, 176, 218, 236, 716, 818, 869, 882
HpaII CCGG 1 cut(s) 815
HphI GGTGA 3 cut(s) 241, 314, 730
Hpy166II GTNNAC 4 cut(s) 65, 86, 877, 968
Hpy188III TCNNGA 4 cut(s) 650, 1054, 1088, 1158
Hpy8I GTNNAC 4 cut(s) 65, 86, 877, 968
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 5 cut(s) 275, 903, 925, 929, 1060
HpyCH4III ACNGT 9 cut(s) 90, 111, 147, 231, 511, 517, 784, 983, 1003
HpyCH4IV ACGT 1 cut(s) 828
HpyCH4V TGCA 5 cut(s) 187, 454, 520, 585, 1025
HpyF10VI GCNNNNNNNGC 3 cut(s) 275, 602, 952
HpyF3I CTNAG 7 cut(s) 56, 234, 321, 411, 439, 1037, 1076
HpySE526I ACGT 1 cut(s) 828
Hsp92II CATG 6 cut(s) 16, 559, 711, 770, 921, 1141
HspAI GCGC 1 cut(s) 844
Kzo9I GATC 2 cut(s) 193, 667
LmnI GCTCC 2 cut(s) 410, 482
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 2 cut(s) 625, 1012
MaeI CTAG 2 cut(s) 947, 1149
MaeII ACGT 1 cut(s) 828
MaeIII GTNAC 1 cut(s) 511
MalI GATC 2 cut(s) 195, 669
MboI GATC 2 cut(s) 193, 667
MboII GAAGA 9 cut(s) 29, 34, 95, 171, 337, 340, 377, 685, 788
MflI RGATCY 1 cut(s) 667
MhlI GDGCHC 2 cut(s) 407, 707
MlsI TGGCCA 1 cut(s) 903
MluCI AATT 5 cut(s) 349, 449, 579, 1057, 1129
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 4 cut(s) 185, 227, 245, 725
MmeI TCCRAC 4 cut(s) 195, 417, 693, 987
Mox20I TGGCCA 1 cut(s) 903
MscI TGGCCA 1 cut(s) 903
MseI TTAA 1 cut(s) 1061
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 2 cut(s) 278, 464
MspI CCGG 1 cut(s) 815
MspR9I CCNGG 2 cut(s) 346, 757
Mva1269I GAATGC 1 cut(s) 585
MvaI CCWGG 2 cut(s) 346, 757
MwoI GCNNNNNNNGC 3 cut(s) 275, 602, 952
NcoI CCATGG 1 cut(s) 12
NdeII GATC 2 cut(s) 193, 667
NlaIII CATG 6 cut(s) 16, 559, 711, 770, 921, 1141
NlaIV GGNNCC 4 cut(s) 72, 406, 569, 809
NmeAIII GCCGAG 1 cut(s) 865
NmuCI GTSAC 1 cut(s) 511
NspI RCATGY 1 cut(s) 1141
PaeR7I CTCGAG 1 cut(s) 1158
PctI GAATGC 1 cut(s) 585
PfeI GAWTC 4 cut(s) 35, 818, 869, 882
PkrI GCNGC 3 cut(s) 466, 799, 1114
PleI GAGTC 4 cut(s) 184, 226, 244, 724
PpsI GAGTC 4 cut(s) 184, 226, 244, 724
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 344, 755
PspFI CCCAGC 1 cut(s) 1115
PspGI CCWGG 2 cut(s) 344, 755
PspN4I GGNNCC 4 cut(s) 72, 406, 569, 809
PspPI GGNCC 3 cut(s) 532, 568, 808
PspPPI RGGWCCY 1 cut(s) 532
PstI CTGCAG 1 cut(s) 189
PstNI CAGNNNCTG 1 cut(s) 515
PsuI RGATCY 1 cut(s) 667
PvuII CAGCTG 1 cut(s) 278
RsaI GTAC 1 cut(s) 827
RsaNI GTAC 1 cut(s) 826
SaqAI TTAA 1 cut(s) 1061
SatI GCNGC 3 cut(s) 465, 798, 1113
Sau3AI GATC 2 cut(s) 193, 667
Sau96I GGNCC 3 cut(s) 532, 568, 808
SchI GAGTC 4 cut(s) 185, 227, 245, 725
ScrFI CCNGG 2 cut(s) 346, 757
SduI GDGCHC 2 cut(s) 407, 707
SfaNI GCATC 2 cut(s) 625, 1012
SfcI CTRYAG 3 cut(s) 185, 639, 999
Sfr274I CTCGAG 1 cut(s) 1158
SinI GGWCC 3 cut(s) 532, 568, 808
SlaI CTCGAG 1 cut(s) 1158
SmlI CTYRAG 1 cut(s) 1158
SmoI CTYRAG 1 cut(s) 1158
Sse9I AATT 5 cut(s) 349, 449, 579, 1057, 1129
SsiI CCGC 6 cut(s) 285, 462, 721, 798, 955, 1112
SspMI CTAG 2 cut(s) 947, 1149
StyD4I CCNGG 2 cut(s) 344, 755
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 9 cut(s) 90, 111, 147, 231, 511, 517, 784, 983, 1003
TaiI ACGT 1 cut(s) 831
TaqI TCGA 3 cut(s) 726, 1159, 1165
TaqII GACCGA 1 cut(s) 807
TasI AATT 5 cut(s) 349, 449, 579, 1057, 1129
TauI GCSGC 2 cut(s) 800, 1115
TfiI GAWTC 4 cut(s) 35, 818, 869, 882
Tru1I TTAA 1 cut(s) 1061
Tru9I TTAA 1 cut(s) 1061
TscAI CASTG 5 cut(s) 67, 516, 809, 892, 1008
TseFI GTSAC 1 cut(s) 511
TseI GCWGC 1 cut(s) 464
Tsp45I GTSAC 1 cut(s) 511
TspDTI ATGAA 5 cut(s) 279, 378, 486, 487, 530
TspGWI ACGGA 2 cut(s) 862, 894
TspRI CASTG 5 cut(s) 67, 516, 809, 892, 1008
VpaK11BI GGWCC 3 cut(s) 532, 568, 808
XapI RAATTY 2 cut(s) 1057, 1129
XceI RCATGY 1 cut(s) 1141
XcmI CCANNNNNNNNNTGG 2 cut(s) 169, 211
XhoI CTCGAG 1 cut(s) 1158
XmiI GTMKAC 1 cut(s) 876
XspI CTAG 2 cut(s) 947, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.